Rh5CG047200

Crooked neck-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002910
Physical Location & Seq
Reverse (-)
3325823 .. 3328112
2290 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG047200.1

Sequence Viewer

Length: 1980 bp
ATGGTCTCTGACAAAGACGCAGACGACCTAACACGAAAGAATAAGAAGGTCAATCTACCAAGACCGAGTAGGGTTAAGAACAAAACACCAGCCCCTATTCAAATCACCGCCGAGCAAATCATCCGGGAGGCCCGTGAGCAACAGGAGCCAGAATTTCGACCTCCCAAACAGAAAATCACAGACCCAACTGAGCTTGCAGATGATCGTCTCCGAGAAGGTAAGCAATTCGAGGACCAAGTCCGGCGAGCAAGGCAGGATATCAGTGTGTGGATCAAGTATGCAGCATGGGAGGAAAAGGAGGACTTGAACCGTGCAAGCTCTGTTTGGGAGCGAGCCCTCAGAGTCGATTATAGGAACCACACGCTGTGGATCAAGTATGCGGAGATGGAGATGAAGAACGAGTACATCGACCATGCTAGGAATGTGTTGGACCGTGCCGTCCAACTCTTGCCTAGAGCGGACCAGCTTTGGTACAAGTACATTCATATGGAAGAGATGACTGGGAATGTGGCCGGTGCTCGACAGATTTTTGAGAGGTGGATGACTTGGATGCCGGAGCAGGAAGGCTGGCTCTCGTATGTCAAGTTTGAGGTCCGGTATAACGAAGTTGAGCGTGCTAGAGCGATTTTTGAGAGGTTTGTACAGTGTCATCCTGGAGTTGGAGCTTGGATCCGGTATGCCAAGTTTGAGGTGAAGAATGGTGGTGATGTTGTAAGGGCTAGGAAAGTGTATGAGAGGGCAGTGGAGATTCTAGCTGATGATGAGGAGGCCGAGCAGCTGTTTTTGGCTTTCGCTGAGTTCGAAGAGAAGTGCAAAGATATTGATCGAGCAAGGTGTGTTTATAAATTTGCATTGGATCAAATAACGAAAGGAAGAGCACAGGATTTGTATAAGAAGTTTGTATGTTTTGAGAAGCGATATGGGGATAGAGAAGGGATTGAGGATGCGGTTGTGGGAACAAGGAGGTTTGAGTATGAGGATGAGATTAGGAAGAATCCTCTAAACTACGACTCCTGGTTTGATTACATAAGGCTGGAAGAGAGTGCAGGTAATAAGGAAAGAATCCGAGAGATTTACGAGAGAGCTGTTGCTAATGTTCCTCCAGCTAATGAGAAGCGGTATTGGAAGCGATATATTTATCTGTGGATTAATTATGCACTATATGAGGAGCTTGATACCGGAGATGTGGAACGTGCACGAGAGGTCTATAGAGAGTGCCTTAATCTGATTCCTCATAAGAAATTCTCATTTGCGAAAATATGGATTCTAGCTGCCGAGTTTGAGATTCGACAGCTGAATCTCACCAGCGCACGCCACATTCTTGGTACTGCTATAGGCAAGGCACCTAAAGAGAAGATATTTAAGAAGTACATTGAGATTGAGCTGCAACTTGCAAAGATAGATCGTGGTCGGAAGTTGTATGATAAGTATCTGCTTTGGAATGCGCAGAGTTGTTATGCTTGGATCAAGTATGCAGAGTTTGAGAAATCTTTAGGTGAAACAGAACGAGCAAGGGCACTTTTTGAACTCGCAATCAGCCAACTAGAACTTGACAATCCTGAATTGGTGTGGATCAGTTATGCAAAATTTGAGGCAGAAGCTCCTGCCAAGGATGATGATGATCTTCTTGAAGAGAAGAGACAATGCATCAAGCGTGCTAGAAGGGTTTTTGAGAGAGCTCTTGACTATTTTATAACTTCAGCACCTGATAAGAAGGAAGAAAGAAGCATGTTGCTAGAAGAATGGTTGAATATGGAGGCTAGCTTTGGGGATCTCGGTGGTGTAAGCTTAGTTCAATCTAAGCTGCCAAAGAAACTGAAGAAGAGGAGGCAAACAATAACTGACGACGGTCCTGCTGGGTACGAGGAATACATCGATTACCTGTTCCCAGAAGAAAGTGAGACGACAAATCTCAAGATTTTGGAAGCTGCCTACCGGTGGAGGAAGAAGACAAAATTTTCTTCTTCTGATGAGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
HAT Suf

Protein Analysis

659

Amino Acids

78.49

Weight (kDa)

6.17

Isoelectric Point (pI)

48.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAT_Syf1_CNRKL1_N PF23233 75 - 218 6e-19 Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
Suf PF05843 78 - 314 2.1e-11 Suppressor of forked protein (Suf)
HAT_PRP39_C PF23241 84 - 186 7.8e-13 PRP39 C-terminal HAT repeat
HAT_Syf1_CNRKL1_C PF23231 87 - 149 1.8e-08 Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
HAT_PRP39_N PF23240 89 - 179 6.8e-08 PRP39 N-terminal HAT repeat
HAT_Syf1_CNRKL1_C PF23231 138 - 235 1.6e-06 Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
HAT_PRP39_N PF23240 165 - 300 9e-13 PRP39 N-terminal HAT repeat
HAT_PRP39_C PF23241 188 - 289 2.2e-14 PRP39 C-terminal HAT repeat
HAT PF02184 202 - 230 9.5e-12 HAT (Half-A-TPR) repeat
HAT_Syf1_CNRKL1_C PF23231 238 - 314 1.1e-10 Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
HAT_PRP39_N PF23240 322 - 445 2.3e-07 PRP39 N-terminal HAT repeat
HAT_Syf1_CNRKL1_N PF23233 323 - 479 2.2e-14 Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_C PF23241 336 - 450 1.6e-08 PRP39 C-terminal HAT repeat
HAT_Syf1_CNRKL1_C PF23231 377 - 477 1.9e-06 Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
HAT_Syf1_CNRKL1_C PF23231 448 - 538 7.1e-06 Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
HAT_PRP39_N PF23240 463 - 563 7.8e-08 PRP39 N-terminal HAT repeat
HAT_PRP39_C PF23241 483 - 586 6.5e-06 PRP39 C-terminal HAT repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 843, 1694
AasI GACNNNNNNGTC 1 cut(s) 437
Acc16I TGCGCA 1 cut(s) 1446
Acc36I ACCTGC 1 cut(s) 1037
AccB1I GGYRCC 1 cut(s) 1342
AccBSI CCGCTC 1 cut(s) 458
AciI CCGC 5 cut(s) 108, 380, 458, 947, 1117
AclWI GGATC 8 cut(s) 278, 377, 664, 677, 864, 1472, 1580, 1779
AcoI YGGCCR 1 cut(s) 510
AcsI RAATTY 5 cut(s) 152, 845, 1241, 1586, 1955
AcuI CTGAAG 2 cut(s) 1683, 1838
AdeI CACNNNGTG 1 cut(s) 366
AfaI GTAC 7 cut(s) 404, 473, 479, 642, 1327, 1370, 1862
AfiI CCNNNNNNNGG 2 cut(s) 659, 1938
AgeI ACCGGT 1 cut(s) 1935
AgsI TTSAA 6 cut(s) 101, 307, 1526, 1631, 1750, 1796
AjnI CCWGG 2 cut(s) 652, 1013
Alw21I GWGCWC 4 cut(s) 520, 880, 1198, 1681
Alw26I GTCTC 4 cut(s) 10, 212, 1633, 1895
Alw44I GTGCAC 1 cut(s) 1194
AlwI GGATC 8 cut(s) 278, 377, 664, 677, 864, 1472, 1580, 1779
AlwNI CAGNNNCTG 1 cut(s) 1706
AoxI GGCC 3 cut(s) 129, 510, 768
ApaLI GTGCAC 1 cut(s) 1194
ApeKI GCWGC 6 cut(s) 281, 775, 1271, 1384, 1804, 1928
ApoI RAATTY 5 cut(s) 152, 845, 1241, 1586, 1955
ArsI GACNNNNNNTTYG 2 cut(s) 1001, 1033
AseI ATTAAT 1 cut(s) 1149
AsiGI ACCGGT 1 cut(s) 1935
AspLEI GCGC 2 cut(s) 1310, 1447
AspS9I GGNCC 6 cut(s) 130, 232, 430, 460, 592, 1850
AsuC2I CCSGG 1 cut(s) 125
AsuHPI GGTGA 5 cut(s) 97, 703, 716, 1294, 1508
AsuII TTCGAA 1 cut(s) 801
AsuNHI GCTAGC 1 cut(s) 1760
AvaII GGWCC 5 cut(s) 232, 430, 460, 592, 1850
BaeGI GKGCMC 2 cut(s) 1198, 1519
BamHI GGATCC 1 cut(s) 669
BanI GGYRCC 1 cut(s) 1342
BanII GRGCYC 2 cut(s) 337, 1681
BarI GAAGNNNNNNTAC 2 cut(s) 386, 418
BauI CACGAG 1 cut(s) 1197
BbsI GAAGAC 1 cut(s) 1955
Bbv12I GWGCWC 4 cut(s) 520, 880, 1198, 1681
BbvI GCAGC 6 cut(s) 293, 787, 1258, 1371, 1791, 1915
BccI CCATC 1 cut(s) 379
BceAI ACGGC 1 cut(s) 422
BcgI CGANNNNNNTGC 2 cut(s) 1835, 1869
BciT130I CCWGG 2 cut(s) 654, 1015
BcnI CCSGG 1 cut(s) 125
BcoDI GTCTC 4 cut(s) 10, 212, 1633, 1895
BfmI CTRYAG 2 cut(s) 1207, 1332
BfuAI ACCTGC 1 cut(s) 1037
BisI GCNGC 6 cut(s) 282, 776, 1272, 1385, 1805, 1929
BlsI GCNGC 6 cut(s) 283, 777, 1273, 1386, 1806, 1930
Bme1390I CCNGG 3 cut(s) 125, 654, 1015
Bme18I GGWCC 5 cut(s) 232, 430, 460, 592, 1850
BmgT120I GGNCC 6 cut(s) 130, 232, 430, 460, 592, 1850
BmiI GGNNCC 4 cut(s) 147, 356, 671, 1344
BmrFI CCNGG 3 cut(s) 125, 654, 1015
BmrI ACTGGG 1 cut(s) 510
BmsI GCATC 3 cut(s) 540, 934, 1656
BmtI GCTAGC 1 cut(s) 1764
BmuI ACTGGG 1 cut(s) 510
BoxI GACNNNNGTC 1 cut(s) 1848
BpiI GAAGAC 1 cut(s) 1955
BpmI CTGGAG 2 cut(s) 675, 1086
Bpu14I TTCGAA 1 cut(s) 801
BpuEI CTTGAG 1 cut(s) 1898
BpuMI CCSGG 1 cut(s) 125
Bsa29I ATCGAT 1 cut(s) 1875
BsaBI GATNNNNATC 3 cut(s) 822, 1428, 1620
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 1608
BsaWI WCCGGW 4 cut(s) 594, 672, 1178, 1935
BsaXI ACNNNNNCTCC 2 cut(s) 995, 1025
Bsc4I CCNNNNNNNGG 2 cut(s) 659, 1938
Bse118I RCCGGY 2 cut(s) 512, 1935
Bse1I ACTGG 1 cut(s) 505
Bse8I GATNNNNATC 3 cut(s) 822, 1428, 1620
BseBI CCWGG 2 cut(s) 654, 1015
BseCI ATCGAT 1 cut(s) 1875
BseDI CCNNGG 1 cut(s) 1608
BseGI GGATG 7 cut(s) 120, 546, 555, 649, 949, 985, 1618
BseJI GATNNNNATC 3 cut(s) 822, 1428, 1620
BseLI CCNNNNNNNGG 2 cut(s) 659, 1938
BseMII CTCAG 3 cut(s) 180, 352, 786
BseNI ACTGG 1 cut(s) 505
BseRI GAGGAG 3 cut(s) 779, 1181, 1840
BseSI GKGCMC 2 cut(s) 1198, 1519
BseXI GCAGC 6 cut(s) 293, 787, 1258, 1371, 1791, 1915
BseYI CCCAGC 1 cut(s) 1856
BsgI GTGCAG 1 cut(s) 1065
BshFI GGCC 3 cut(s) 131, 512, 770
BshNI GGYRCC 1 cut(s) 1342
BshTI ACCGGT 1 cut(s) 1935
BshVI ATCGAT 1 cut(s) 1875
BsiHKAI GWGCWC 4 cut(s) 520, 880, 1198, 1681
BsiSI CCGG 8 cut(s) 124, 241, 513, 554, 595, 673, 1179, 1936
BslI CCNNNNNNNGG 2 cut(s) 659, 1938
BsmAI GTCTC 4 cut(s) 10, 212, 1633, 1895
BsmBI CGTCTC 2 cut(s) 212, 1895
BsmI GAATGC 1 cut(s) 1447
BsnI GGCC 3 cut(s) 131, 512, 770
Bso31I GGTCTC 1 cut(s) 10
Bsp119I TTCGAA 1 cut(s) 801
Bsp1286I GDGCHC 6 cut(s) 337, 520, 880, 1198, 1519, 1681
Bsp1407I TGTACA 1 cut(s) 640
BspACI CCGC 5 cut(s) 108, 380, 458, 947, 1117
BspANI GGCC 3 cut(s) 131, 512, 770
BspCNI CTCAG 3 cut(s) 181, 351, 787
BspDI ATCGAT 1 cut(s) 1875
BspLI GGNNCC 4 cut(s) 147, 356, 671, 1344
BspMI ACCTGC 1 cut(s) 1037
BspOI GCTAGC 1 cut(s) 1764
BspPI GGATC 8 cut(s) 278, 377, 664, 677, 864, 1472, 1580, 1779
BspQI GCTCTTC 1 cut(s) 868
BspT104I TTCGAA 1 cut(s) 801
BspT107I GGYRCC 1 cut(s) 1342
BspTNI GGTCTC 1 cut(s) 10
BsrBI CCGCTC 1 cut(s) 458
BsrFI RCCGGY 2 cut(s) 512, 1935
BsrGI TGTACA 1 cut(s) 640
BsrI ACTGG 1 cut(s) 505
BssAI RCCGGY 2 cut(s) 512, 1935
BssECI CCNNGG 1 cut(s) 1608
BssSI CACGAG 1 cut(s) 1197
BssT1I CCWWGG 1 cut(s) 1608
Bst2BI CACGAG 1 cut(s) 1197
Bst2UI CCWGG 2 cut(s) 654, 1015
Bst4CI ACNGT 4 cut(s) 311, 434, 645, 1850
Bst6I CTCTTC 7 cut(s) 486, 798, 868, 1032, 1626, 1631, 1817
BstAUI TGTACA 1 cut(s) 640
BstBI TTCGAA 1 cut(s) 801
BstC8I GCNNGC 9 cut(s) 195, 246, 316, 333, 569, 615, 1312, 1656, 1762
BstDEI CTNAG 5 cut(s) 189, 338, 795, 1789, 1800
BstF5I GGATG 7 cut(s) 120, 546, 555, 649, 949, 985, 1618
BstHHI GCGC 2 cut(s) 1310, 1447
BstMAI GTCTC 4 cut(s) 10, 212, 1633, 1895
BstMWI GCNNNNNNNGC 2 cut(s) 145, 250
BstNI CCWGG 2 cut(s) 654, 1015
BstNSI RCATGY 1 cut(s) 1732
BstPAI GACNNNNGTC 1 cut(s) 1848
BstSCI CCNGG 3 cut(s) 123, 652, 1013
BstSFI CTRYAG 2 cut(s) 1207, 1332
BstSLI GKGCMC 2 cut(s) 1198, 1519
BstV1I GCAGC 6 cut(s) 293, 787, 1258, 1371, 1791, 1915
BstV2I GAAGAC 1 cut(s) 1955
BstX2I RGATCY 2 cut(s) 669, 1771
BstXI CCANNNNNNTGG 1 cut(s) 1322
BstYI RGATCY 2 cut(s) 669, 1771
Bsu15I ATCGAT 1 cut(s) 1875
BsuRI GGCC 3 cut(s) 131, 512, 770
BsuTUI ATCGAT 1 cut(s) 1875
BtsCI GGATG 7 cut(s) 120, 546, 555, 649, 949, 985, 1618
BtsI GCAGTG 1 cut(s) 747
BtsIMutI CAGTG 3 cut(s) 268, 650, 747
BveI ACCTGC 1 cut(s) 1037
Cac8I GCNNGC 9 cut(s) 195, 246, 316, 333, 569, 615, 1312, 1656, 1762
CaiI CAGNNNCTG 1 cut(s) 1706
CfoI GCGC 2 cut(s) 1310, 1447
Cfr10I RCCGGY 2 cut(s) 512, 1935
Cfr13I GGNCC 6 cut(s) 130, 232, 430, 460, 592, 1850
ClaI ATCGAT 1 cut(s) 1875
CseI GACGC 1 cut(s) 26
Csp6I GTAC 7 cut(s) 403, 472, 478, 641, 1326, 1369, 1861
CspAI ACCGGT 1 cut(s) 1935
CviAII CATG 3 cut(s) 285, 413, 1729
CviQI GTAC 7 cut(s) 403, 472, 478, 641, 1326, 1369, 1861
DdeI CTNAG 5 cut(s) 189, 338, 795, 1789, 1800
DraIII CACNNNGTG 1 cut(s) 366
DrdI GACNNNNNNGTC 1 cut(s) 437
DseDI GACNNNNNNGTC 1 cut(s) 437
EaeI YGGCCR 1 cut(s) 510
Eam1104I CTCTTC 7 cut(s) 486, 798, 868, 1032, 1626, 1631, 1817
EarI CTCTTC 7 cut(s) 486, 798, 868, 1032, 1626, 1631, 1817
Ecl136II GAGCTC 1 cut(s) 1679
Eco130I CCWWGG 1 cut(s) 1608
Eco24I GRGCYC 2 cut(s) 337, 1681
Eco31I GGTCTC 1 cut(s) 10
Eco32I GATATC 1 cut(s) 259
Eco47I GGWCC 5 cut(s) 232, 430, 460, 592, 1850
Eco53kI GAGCTC 1 cut(s) 1679
Eco57I CTGAAG 2 cut(s) 1683, 1838
EcoICRI GAGCTC 1 cut(s) 1679
EcoRII CCWGG 2 cut(s) 652, 1013
EcoRV GATATC 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 1608
EcoT22I ATGCAT 1 cut(s) 1649
EcoT38I GRGCYC 2 cut(s) 337, 1681
ErhI CCWWGG 1 cut(s) 1608
Esp3I CGTCTC 2 cut(s) 212, 1895
FaeI CATG 3 cut(s) 288, 416, 1732
FalI AAGNNNNNCTT 2 cut(s) 287, 319
FatI CATG 3 cut(s) 284, 412, 1728
FauNDI CATATG 1 cut(s) 486
Fnu4HI GCNGC 6 cut(s) 282, 776, 1272, 1385, 1805, 1929
FokI GGATG 7 cut(s) 107, 553, 562, 636, 956, 992, 1625
FriOI GRGCYC 2 cut(s) 337, 1681
Fsp4HI GCNGC 6 cut(s) 282, 776, 1272, 1385, 1805, 1929
FspI TGCGCA 1 cut(s) 1446
GlaI GCGC 2 cut(s) 1309, 1446
GluI GCNGC 6 cut(s) 282, 776, 1272, 1385, 1805, 1929
GsaI CCCAGC 1 cut(s) 1860
GsuI CTGGAG 2 cut(s) 675, 1086
HaeIII GGCC 3 cut(s) 131, 512, 770
HapII CCGG 8 cut(s) 124, 241, 513, 554, 595, 673, 1179, 1936
HgaI GACGC 1 cut(s) 26
HhaI GCGC 2 cut(s) 1310, 1447
Hin1II CATG 3 cut(s) 288, 416, 1732
Hin6I GCGC 2 cut(s) 1308, 1445
HinP1I GCGC 2 cut(s) 1308, 1445
HindIII AAGCTT 1 cut(s) 1786
HinfI GANTC 9 cut(s) 342, 748, 994, 1010, 1062, 1228, 1264, 1285, 1297
HpaII CCGG 8 cut(s) 124, 241, 513, 554, 595, 673, 1179, 1936
HphI GGTGA 5 cut(s) 97, 703, 716, 1294, 1508
Hpy166II GTNNAC 1 cut(s) 1196
Hpy188I TCNGA 7 cut(s) 10, 212, 341, 1067, 1227, 1413, 1969
Hpy188III TCNNGA 4 cut(s) 1559, 1628, 1682, 1915
Hpy8I GTNNAC 1 cut(s) 1196
Hpy99I CGWCG 1 cut(s) 1850
HpyAV CCTTC 6 cut(s) 40, 209, 557, 926, 1656, 1708
HpyCH4III ACNGT 4 cut(s) 311, 434, 645, 1850
HpyCH4IV ACGT 1 cut(s) 1192
HpyF10VI GCNNNNNNNGC 2 cut(s) 145, 250
HpyF3I CTNAG 5 cut(s) 189, 338, 795, 1789, 1800
HpySE526I ACGT 1 cut(s) 1192
Hsp92II CATG 3 cut(s) 288, 416, 1732
HspAI GCGC 2 cut(s) 1308, 1445
LguI GCTCTTC 1 cut(s) 868
LmnI GCTCC 6 cut(s) 145, 328, 556, 662, 1168, 1606
Lsp1109I GCAGC 6 cut(s) 293, 787, 1258, 1371, 1791, 1915
LweI GCATC 3 cut(s) 540, 934, 1656
MaeII ACGT 1 cut(s) 1192
MbiI CCGCTC 1 cut(s) 458
MflI RGATCY 2 cut(s) 669, 1771
MhlI GDGCHC 6 cut(s) 337, 520, 880, 1198, 1519, 1681
MluCI AATT 8 cut(s) 152, 224, 845, 1150, 1241, 1562, 1586, 1955
MlyI GAGTC 2 cut(s) 351, 1004
MmeI TCCRAC 4 cut(s) 408, 466, 640, 1391
Mph1103I ATGCAT 1 cut(s) 1649
MseI TTAA 4 cut(s) 75, 1149, 1221, 1362
MslI CAYNNNNRTG 1 cut(s) 485
MspA1I CMGCKG 2 cut(s) 778, 1294
MspI CCGG 8 cut(s) 124, 241, 513, 554, 595, 673, 1179, 1936
MspR9I CCNGG 3 cut(s) 125, 654, 1015
Mva1269I GAATGC 1 cut(s) 1447
MvaI CCWGG 2 cut(s) 654, 1015
MwoI GCNNNNNNNGC 2 cut(s) 145, 250
NciI CCSGG 1 cut(s) 125
NdeI CATATG 1 cut(s) 486
NheI GCTAGC 1 cut(s) 1760
NlaIII CATG 3 cut(s) 288, 416, 1732
NlaIV GGNNCC 4 cut(s) 147, 356, 671, 1344
NmeAIII GCCGAG 3 cut(s) 136, 796, 1300
NsbI TGCGCA 1 cut(s) 1446
NsiI ATGCAT 1 cut(s) 1649
NspI RCATGY 1 cut(s) 1732
NspV TTCGAA 1 cut(s) 801
PciSI GCTCTTC 1 cut(s) 868
PcsI WCGNNNNNNNCGW 2 cut(s) 405, 798
PctI GAATGC 1 cut(s) 1447
PfeI GAWTC 7 cut(s) 748, 994, 1062, 1228, 1264, 1285, 1297
PflFI GACNNNGTC 1 cut(s) 236
PfoI TCCNGGA 2 cut(s) 123, 652
PinAI ACCGGT 1 cut(s) 1935
PkrI GCNGC 6 cut(s) 283, 777, 1273, 1386, 1806, 1930
PleI GAGTC 2 cut(s) 350, 1004
PpsI GAGTC 2 cut(s) 350, 1004
PshAI GACNNNNGTC 1 cut(s) 1848
PshBI ATTAAT 1 cut(s) 1149
PsiI TTATAA 2 cut(s) 843, 1694
Psp124BI GAGCTC 1 cut(s) 1681
Psp6I CCWGG 2 cut(s) 652, 1013
PspFI CCCAGC 1 cut(s) 1856
PspGI CCWGG 2 cut(s) 652, 1013
PspN4I GGNNCC 4 cut(s) 147, 356, 671, 1344
PspPI GGNCC 6 cut(s) 130, 232, 430, 460, 592, 1850
PsrI GAACNNNNNNTAC 2 cut(s) 1776, 1808
PstNI CAGNNNCTG 1 cut(s) 1706
PsuI RGATCY 2 cut(s) 669, 1771
PsyI GACNNNGTC 1 cut(s) 236
PvuII CAGCTG 2 cut(s) 778, 1294
RsaI GTAC 7 cut(s) 404, 473, 479, 642, 1327, 1370, 1862
RsaNI GTAC 7 cut(s) 403, 472, 478, 641, 1326, 1369, 1861
RseI CAYNNNNRTG 1 cut(s) 485
SacI GAGCTC 1 cut(s) 1681
SapI GCTCTTC 1 cut(s) 868
SaqAI TTAA 4 cut(s) 75, 1149, 1221, 1362
SatI GCNGC 6 cut(s) 282, 776, 1272, 1385, 1805, 1929
Sau96I GGNCC 6 cut(s) 130, 232, 430, 460, 592, 1850
SchI GAGTC 2 cut(s) 351, 1004
ScrFI CCNGG 3 cut(s) 125, 654, 1015
SduI GDGCHC 6 cut(s) 337, 520, 880, 1198, 1519, 1681
SfaNI GCATC 3 cut(s) 540, 934, 1656
SfcI CTRYAG 2 cut(s) 1207, 1332
SfuI TTCGAA 1 cut(s) 801
SinI GGWCC 5 cut(s) 232, 430, 460, 592, 1850
SmiMI CAYNNNNRTG 1 cut(s) 485
SmlI CTYRAG 1 cut(s) 1913
SmoI CTYRAG 1 cut(s) 1913
Sse9I AATT 8 cut(s) 152, 224, 845, 1150, 1241, 1562, 1586, 1955
SsiI CCGC 5 cut(s) 108, 380, 458, 947, 1117
SstI GAGCTC 1 cut(s) 1681
StyD4I CCNGG 3 cut(s) 123, 652, 1013
StyI CCWWGG 1 cut(s) 1608
TaaI ACNGT 4 cut(s) 311, 434, 645, 1850
TaiI ACGT 1 cut(s) 1195
TaqI TCGA 9 cut(s) 157, 228, 345, 408, 520, 801, 826, 1288, 1875
TaqII GACCGA 1 cut(s) 79
TasI AATT 8 cut(s) 152, 224, 845, 1150, 1241, 1562, 1586, 1955
TatI WGTACW 4 cut(s) 402, 477, 640, 1368
TfiI GAWTC 7 cut(s) 748, 994, 1062, 1228, 1264, 1285, 1297
Tru1I TTAA 4 cut(s) 75, 1149, 1221, 1362
Tru9I TTAA 4 cut(s) 75, 1149, 1221, 1362
TscAI CASTG 3 cut(s) 268, 650, 747
TseI GCWGC 6 cut(s) 281, 775, 1271, 1384, 1804, 1928
TspDTI ATGAA 2 cut(s) 407, 473
TspRI CASTG 3 cut(s) 268, 650, 747
Tth111I GACNNNGTC 1 cut(s) 236
VneI GTGCAC 1 cut(s) 1194
VpaK11BI GGWCC 5 cut(s) 232, 430, 460, 592, 1850
VspI ATTAAT 1 cut(s) 1149
XapI RAATTY 5 cut(s) 152, 845, 1241, 1586, 1955
XceI RCATGY 1 cut(s) 1732
Zsp2I ATGCAT 1 cut(s) 1649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.