Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8413909.1

Orthogroup ID

OG0002910

Physical Location & Seq

Genomic Coordinates Forward (+)

218 .. 1359

Gene Structure 1142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8413909.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1142 bp

atgggctcttacaaggacgctgacccagccctggggtacctaacccgaaaggatacggaggtcaagctaccacggccgactagggttaagaataagacaccagcccctgttcagattaccgccgagcaaatcctccgggaggctcgcgagcggcaggaggcggaaatccggcctcccaagcagaaaatcactgacccatctgagcttgcggattatcgtctgcgaaaacgaaaggaatttgaggatttaattcggagagtgcggtggaatgtgagtgtttggatcaagtatgcgcagtgggaggagtcccagaaggacttcaagcgtgcacggtctgtttgggagcgtgcccttgaggtggattatcggaatcatacgctatggctcaagtatgcggaggtggagatgaagaacaagttcattaatcatgctaggaatgtctgggaccgtgctgtccaactcttgcctagagtggaccagctctggtacaagtacattcacatggaggagatgattgggaatgtggctggtgctcggcaaattttcgagaggtggatgacttggatgccagaccagcaaggctggctatccttcatcaaatttgagcttcggtataatgaagttgagcgtgctagagcgattttcgagcggtttgtacaatgtcatccgaaagttgcagcttggattcggtttgccaaatttgagatgaagaatggtgatgttgcgagggcgaggaatgtgtatgagagggcagtggagaagttagctgatgatgaggaggctgagcagctgtttgtggctttcgctgaatttgaagagcggtgcaaagagaccgagcgagctcggtgtatctataaatttgcactggatcacatacccaaaggaagagctgaggacttgtataagaagtttgtatcttttgagaagcaatatggcgatagagaagggattgaggatgccattgtgggaaagaggaggtttcagtatgaggatgaggttaggaagaatcctcttaattacgactcttggtttgattatataaggctggaagagagtgcagggaataaggacagaatcagagaggtttatgagcgagctgttgctaatgttcctcctgctcctgagaagcggtattggcagcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0000974 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0071007 GO:0071010 GO:0071011 GO:0071012 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

HAT Suf TPR_8

Protein Analysis

381

Amino Acids

46.11

Weight (kDa)

9.16

Isoelectric Point (pI)

46.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13210 AT5G41770 AT5G45990 AT5G45990
fragaria_vesca	FvH4_3g03250 FvH4_5g04070 FvH4_5g04070 FvH4_5g04070 FvH4_5g04070
malus_domestica	MD06G1102000.v1.1 MD14G1121300.v1.1
prunus_persica	Prupe.5G115100_v2.0.a1
pyrus_communis	pycom06g09690
rosa_chinensis	RchiOBHm_Chr5g0005001 RchiOBHm_Chr7g0195451
rosa_laevigata	RLG00000004120 RLG00000031279
rosa_multiflora	Rmu_co8413909.1_g000001 Rmu_sc0010714.1_g000003 Rmu_sc0016543.1_g000004 Rmu_sc0018163.1_g000001 Rmu_sc0020160.1_g000003
rosa_roxburghii	Rroxscaffold_3G00260470
rosa_rugosa	Rorug04G0415100 Rorug04G0460000 Rorug07G0023200
rosa_samantha	Rh5AG042700 Rh5BG042400 Rh5BG086900 Rh5BG087100 Rh5CG047200 Rh5DG042700 Rh7AG150800 Rh7BG152400 Rh7CG156000 Rh7DG151800
rosa_wichuraiana	Rw5G004150 Rw7G012870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	452
Acc16I	TGCGCA	1 cut(s)	294
Acc65I	GGTACC	1 cut(s)	36
AccB1I	GGYRCC	1 cut(s)	36
AccBSI	CCGCTC	3 cut(s)	151, 649, 820
AccII	CGCG	1 cut(s)	147
AciI	CCGC	9 cut(s)	120, 151, 161, 209, 262, 395, 649, 820, 1129
AclWI	GGATC	2 cut(s)	290, 876
AcoI	YGGCCR	1 cut(s)	74
AcsI	RAATTY	6 cut(s)	236, 540, 599, 698, 809, 857
AfaI	GTAC	4 cut(s)	38, 488, 494, 657
AfiI	CCNNNNNNNGG	4 cut(s)	31, 32, 139, 358
AgsI	TTSAA	2 cut(s)	322, 815
AjnI	CCWGG	1 cut(s)	30
Alw21I	GWGCWC	3 cut(s)	331, 535, 844
Alw26I	GTCTC	1 cut(s)	824
Alw44I	GTGCAC	1 cut(s)	327
AlwI	GGATC	2 cut(s)	290, 876
AlwNI	CAGNNNCTG	1 cut(s)	107
AoxI	GGCC	2 cut(s)	74, 170
ApaLI	GTGCAC	1 cut(s)	327
ApeKI	GCWGC	3 cut(s)	677, 787, 1138
ApoI	RAATTY	6 cut(s)	236, 540, 599, 698, 809, 857
ArsI	GACNNNNNNTTYG	2 cut(s)	1013, 1045
AseI	ATTAAT	1 cut(s)	423
Asp700I	GAANNNNTTC	2 cut(s)	317, 416
Asp718I	GGTACC	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	295
AspS9I	GGNCC	2 cut(s)	445, 475
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	1 cut(s)	728
AvaII	GGWCC	2 cut(s)	445, 475
BaeGI	GKGCMC	2 cut(s)	331, 352
BaeI	ACNNNNGTAYC	2 cut(s)	45, 78
BanI	GGYRCC	1 cut(s)	36
BanII	GRGCYC	2 cut(s)	8, 844
Bbv12I	GWGCWC	3 cut(s)	331, 535, 844
BbvCI	CCTCAGC	1 cut(s)	891
BbvI	GCAGC	2 cut(s)	689, 799
BccI	CCATC	1 cut(s)	205
BceAI	ACGGC	1 cut(s)	89
BciT130I	CCWGG	1 cut(s)	32
BciVI	GTATCC	1 cut(s)	46
BcnI	CCSGG	1 cut(s)	137
BcoDI	GTCTC	1 cut(s)	824
BfaI	CTAG	4 cut(s)	81, 432, 468, 633
BfuI	GTATCC	1 cut(s)	46
BisI	GCNGC	4 cut(s)	152, 678, 788, 1139
BlpI	GCTNAGC	1 cut(s)	783
BlsI	GCNGC	4 cut(s)	153, 679, 789, 1140
Bme1390I	CCNGG	2 cut(s)	32, 137
Bme18I	GGWCC	2 cut(s)	445, 475
BmgT120I	GGNCC	2 cut(s)	445, 475
BmiI	GGNNCC	2 cut(s)	38, 446
BmrFI	CCNGG	2 cut(s)	32, 137
BmsI	GCATC	2 cut(s)	555, 946
Bpu10I	CCTNAGC	1 cut(s)	891
Bpu1102I	GCTNAGC	1 cut(s)	783
BpuEI	CTTGAG	2 cut(s)	371, 374
BpuMI	CCSGG	1 cut(s)	137
BsaI	GGTCTC	1 cut(s)	824
BsaJI	CCNNGG	3 cut(s)	30, 31, 71
Bsc4I	CCNNNNNNNGG	4 cut(s)	31, 32, 139, 358
Bse1I	ACTGG	1 cut(s)	870
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	3 cut(s)	30, 31, 71
BseGI	GGATG	5 cut(s)	561, 570, 664, 961, 997
BseLI	CCNNNNNNNGG	4 cut(s)	31, 32, 139, 358
BseMII	CTCAG	4 cut(s)	192, 774, 882, 1113
BseNI	ACTGG	1 cut(s)	870
BseRI	GAGGAG	4 cut(s)	317, 521, 791, 988
BseSI	GKGCMC	2 cut(s)	331, 352
BseX3I	CGGCCG	1 cut(s)	74
BseXI	GCAGC	2 cut(s)	689, 799
BseYI	CCCAGC	1 cut(s)	25
BsgI	GTGCAG	1 cut(s)	1077
Bsh1236I	CGCG	1 cut(s)	147
Bsh1285I	CGRYCG	1 cut(s)	77
BshFI	GGCC	2 cut(s)	76, 172
BshNI	GGYRCC	1 cut(s)	36
BsiEI	CGRYCG	1 cut(s)	77
BsiHKAI	GWGCWC	3 cut(s)	331, 535, 844
BsiSI	CCGG	2 cut(s)	136, 169
BslFI	GGGAC	2 cut(s)	292, 458
BslI	CCNNNNNNNGG	4 cut(s)	31, 32, 139, 358
BsmAI	GTCTC	1 cut(s)	824
BsmFI	GGGAC	2 cut(s)	292, 458
BsnI	GGCC	2 cut(s)	76, 172
Bso31I	GGTCTC	1 cut(s)	824
Bsp1286I	GDGCHC	5 cut(s)	8, 331, 352, 535, 844
Bsp1407I	TGTACA	1 cut(s)	655
Bsp143I	GATC	2 cut(s)	282, 868
Bsp1720I	GCTNAGC	1 cut(s)	783
Bsp68I	TCGCGA	1 cut(s)	147
BspACI	CCGC	9 cut(s)	120, 151, 161, 209, 262, 395, 649, 820, 1129
BspANI	GGCC	2 cut(s)	76, 172
BspCNI	CTCAG	4 cut(s)	193, 775, 883, 1114
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	2 cut(s)	38, 446
BspPI	GGATC	2 cut(s)	290, 876
BspQI	GCTCTTC	2 cut(s)	810, 880
BspT107I	GGYRCC	1 cut(s)	36
BspTNI	GGTCTC	1 cut(s)	824
BsrBI	CCGCTC	3 cut(s)	151, 649, 820
BsrGI	TGTACA	1 cut(s)	655
BsrI	ACTGG	1 cut(s)	870
BssECI	CCNNGG	3 cut(s)	30, 31, 71
BssMI	GATC	2 cut(s)	282, 868
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	2 cut(s)	333, 449
Bst6I	CTCTTC	3 cut(s)	810, 880, 1044
BstAUI	TGTACA	1 cut(s)	655
BstC8I	GCNNGC	9 cut(s)	145, 149, 207, 327, 348, 584, 630, 840, 1095
BstDEI	CTNAG	4 cut(s)	201, 783, 891, 1122
BstDSI	CCRYGG	1 cut(s)	71
BstENI	CCTNNNNNAGG	1 cut(s)	137
BstF5I	GGATG	5 cut(s)	561, 570, 664, 961, 997
BstFNI	CGCG	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	2 cut(s)	285, 871
BstMAI	GTCTC	1 cut(s)	824
BstMBI	GATC	2 cut(s)	282, 868
BstMCI	CGRYCG	1 cut(s)	77
BstMWI	GCNNNNNNNGC	6 cut(s)	26, 73, 178, 574, 583, 1135
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	2 cut(s)	30, 135
BstSLI	GKGCMC	2 cut(s)	331, 352
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	2 cut(s)	689, 799
BstZI	CGGCCG	1 cut(s)	74
BsuI	GTATCC	1 cut(s)	46
BsuRI	GGCC	2 cut(s)	76, 172
BtgI	CCRYGG	1 cut(s)	71
BtsCI	GGATG	5 cut(s)	561, 570, 664, 961, 997
BtsI	GCAGTG	2 cut(s)	302, 759
BtsIMutI	CAGTG	4 cut(s)	189, 302, 759, 863
BtuMI	TCGCGA	1 cut(s)	147
Cac8I	GCNNGC	9 cut(s)	145, 149, 207, 327, 348, 584, 630, 840, 1095
CaiI	CAGNNNCTG	1 cut(s)	107
CfoI	GCGC	1 cut(s)	295
Cfr13I	GGNCC	2 cut(s)	445, 475
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	4 cut(s)	37, 487, 493, 656
CviAII	CATG	2 cut(s)	428, 502
CviQI	GTAC	4 cut(s)	37, 487, 493, 656
DdeI	CTNAG	4 cut(s)	201, 783, 891, 1122
DpnI	GATC	2 cut(s)	284, 870
DpnII	GATC	2 cut(s)	282, 868
DrdI	GACNNNNNNGTC	1 cut(s)	452
DseDI	GACNNNNNNGTC	1 cut(s)	452
EaeI	YGGCCR	1 cut(s)	74
EagI	CGGCCG	1 cut(s)	74
Eam1104I	CTCTTC	3 cut(s)	810, 880, 1044
EarI	CTCTTC	3 cut(s)	810, 880, 1044
EciI	GGCGGA	1 cut(s)	176
Ecl136II	GAGCTC	1 cut(s)	842
EclXI	CGGCCG	1 cut(s)	74
Eco24I	GRGCYC	2 cut(s)	8, 844
Eco31I	GGTCTC	1 cut(s)	824
Eco47I	GGWCC	2 cut(s)	445, 475
Eco52I	CGGCCG	1 cut(s)	74
Eco53kI	GAGCTC	1 cut(s)	842
EcoICRI	GAGCTC	1 cut(s)	842
EcoNI	CCTNNNNNAGG	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	30
EcoT38I	GRGCYC	2 cut(s)	8, 844
FaeI	CATG	2 cut(s)	431, 505
FaqI	GGGAC	2 cut(s)	292, 458
FatI	CATG	2 cut(s)	427, 501
Fnu4HI	GCNGC	4 cut(s)	152, 678, 788, 1139
FokI	GGATG	5 cut(s)	568, 577, 651, 968, 1004
FriOI	GRGCYC	2 cut(s)	8, 844
Fsp4HI	GCNGC	4 cut(s)	152, 678, 788, 1139
FspBI	CTAG	4 cut(s)	81, 432, 468, 633
FspI	TGCGCA	1 cut(s)	294
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	4 cut(s)	152, 678, 788, 1139
GsaI	CCCAGC	1 cut(s)	29
HaeIII	GGCC	2 cut(s)	76, 172
HapII	CCGG	2 cut(s)	136, 169
HgaI	GACGC	1 cut(s)	26
HhaI	GCGC	1 cut(s)	295
Hin1II	CATG	2 cut(s)	431, 505
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HinfI	GANTC	6 cut(s)	305, 370, 685, 1006, 1022, 1074
HpaII	CCGG	2 cut(s)	136, 169
HphI	GGTGA	1 cut(s)	728
Hpy166II	GTNNAC	2 cut(s)	329, 475
Hpy188I	TCNGA	6 cut(s)	114, 202, 255, 369, 669, 1079
Hpy188III	TCNNGA	3 cut(s)	146, 547, 1121
Hpy8I	GTNNAC	2 cut(s)	329, 475
HpyAV	CCTTC	3 cut(s)	307, 601, 938
HpyCH4III	ACNGT	2 cut(s)	333, 449
HpyCH4V	TGCA	5 cut(s)	329, 677, 825, 863, 1058
HpyF10VI	GCNNNNNNNGC	6 cut(s)	26, 73, 178, 574, 583, 1135
HpyF3I	CTNAG	4 cut(s)	201, 783, 891, 1122
Hsp92II	CATG	2 cut(s)	431, 505
HspAI	GCGC	1 cut(s)	293
KpnI	GGTACC	1 cut(s)	40
Kzo9I	GATC	2 cut(s)	282, 868
LguI	GCTCTTC	2 cut(s)	810, 880
LmnI	GCTCC	2 cut(s)	343, 1123
Lsp1109I	GCAGC	2 cut(s)	689, 799
LweI	GCATC	2 cut(s)	555, 946
MaeI	CTAG	4 cut(s)	81, 432, 468, 633
MalI	GATC	2 cut(s)	284, 870
MbiI	CCGCTC	3 cut(s)	151, 649, 820
MboI	GATC	2 cut(s)	282, 868
MboII	GAAGA	6 cut(s)	421, 721, 827, 897, 1015, 1061
MhlI	GDGCHC	5 cut(s)	8, 331, 352, 535, 844
MluCI	AATT	8 cut(s)	236, 249, 540, 599, 698, 809, 857, 1015
MlyI	GAGTC	2 cut(s)	314, 1016
MmeI	TCCRAC	1 cut(s)	481
MroXI	GAANNNNTTC	2 cut(s)	317, 416
MseI	TTAA	4 cut(s)	87, 248, 423, 1014
MslI	CAYNNNNRTG	1 cut(s)	500
MspA1I	CMGCKG	1 cut(s)	790
MspI	CCGG	2 cut(s)	136, 169
MspR9I	CCNGG	2 cut(s)	32, 137
MvaI	CCWGG	1 cut(s)	32
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	6 cut(s)	26, 73, 178, 574, 583, 1135
NciI	CCSGG	1 cut(s)	137
NdeII	GATC	2 cut(s)	282, 868
NlaIII	CATG	2 cut(s)	431, 505
NlaIV	GGNNCC	2 cut(s)	38, 446
NmeAIII	GCCGAG	2 cut(s)	148, 514
NruI	TCGCGA	1 cut(s)	147
NsbI	TGCGCA	1 cut(s)	294
PasI	CCCWGGG	1 cut(s)	31
PciSI	GCTCTTC	2 cut(s)	810, 880
PdmI	GAANNNNTTC	2 cut(s)	317, 416
PfeI	GAWTC	4 cut(s)	370, 685, 1006, 1074
PfoI	TCCNGGA	1 cut(s)	135
PkrI	GCNGC	4 cut(s)	153, 679, 789, 1140
PleI	GAGTC	2 cut(s)	313, 1016
PpsI	GAGTC	2 cut(s)	313, 1016
PshBI	ATTAAT	1 cut(s)	423
Psp124BI	GAGCTC	1 cut(s)	844
Psp6I	CCWGG	1 cut(s)	30
PspFI	CCCAGC	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	2 cut(s)	38, 446
PspPI	GGNCC	2 cut(s)	445, 475
PstNI	CAGNNNCTG	1 cut(s)	107
PvuII	CAGCTG	1 cut(s)	790
RruI	TCGCGA	1 cut(s)	147
RsaI	GTAC	4 cut(s)	38, 488, 494, 657
RsaNI	GTAC	4 cut(s)	37, 487, 493, 656
RseI	CAYNNNNRTG	1 cut(s)	500
SacI	GAGCTC	1 cut(s)	844
SapI	GCTCTTC	2 cut(s)	810, 880
SaqAI	TTAA	4 cut(s)	87, 248, 423, 1014
SatI	GCNGC	4 cut(s)	152, 678, 788, 1139
Sau3AI	GATC	2 cut(s)	282, 868
Sau96I	GGNCC	2 cut(s)	445, 475
SchI	GAGTC	2 cut(s)	314, 1016
ScrFI	CCNGG	2 cut(s)	32, 137
SduI	GDGCHC	5 cut(s)	8, 331, 352, 535, 844
SfaNI	GCATC	2 cut(s)	555, 946
SinI	GGWCC	2 cut(s)	445, 475
SmiMI	CAYNNNNRTG	1 cut(s)	500
SmlI	CTYRAG	2 cut(s)	353, 386
SmoI	CTYRAG	2 cut(s)	353, 386
Sse9I	AATT	8 cut(s)	236, 249, 540, 599, 698, 809, 857, 1015
SsiI	CCGC	9 cut(s)	120, 151, 161, 209, 262, 395, 649, 820, 1129
SspMI	CTAG	4 cut(s)	81, 432, 468, 633
SstI	GAGCTC	1 cut(s)	844
StyD4I	CCNGG	2 cut(s)	30, 135
TaaI	ACNGT	2 cut(s)	333, 449
TaqI	TCGA	2 cut(s)	546, 645
TaqII	GACCGA	1 cut(s)	848
TasI	AATT	8 cut(s)	236, 249, 540, 599, 698, 809, 857, 1015
TatI	WGTACW	2 cut(s)	492, 655
TauI	GCSGC	1 cut(s)	154
TfiI	GAWTC	4 cut(s)	370, 685, 1006, 1074
Tru1I	TTAA	4 cut(s)	87, 248, 423, 1014
Tru9I	TTAA	4 cut(s)	87, 248, 423, 1014
TscAI	CASTG	4 cut(s)	196, 302, 759, 870
TseI	GCWGC	3 cut(s)	677, 787, 1138
TspDTI	ATGAA	5 cut(s)	409, 422, 583, 633, 722
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	4 cut(s)	196, 302, 759, 870
VneI	GTGCAC	1 cut(s)	327
VpaK11BI	GGWCC	2 cut(s)	445, 475
VspI	ATTAAT	1 cut(s)	423
XagI	CCTNNNNNAGG	1 cut(s)	137
XapI	RAATTY	6 cut(s)	236, 540, 599, 698, 809, 857
XmnI	GAANNNNTTC	2 cut(s)	317, 416
XspI	CTAG	4 cut(s)	81, 432, 468, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.