Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002910

Physical Location & Seq

Genomic Coordinates Reverse (-)

12204718 .. 12210547

Gene Structure 5830 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG150800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1851 bp

ATGGGCTCTTACAAGGACGCTGACCCAGCCCTAGGGTACCTAACCCGAAAGGATACGGAGGTCAAGCTACCACGGCCGACTAGGGTTAAGAATAAAACACCAGCCCCTGTTCAGATTACCGCCGAGCAAATCCTCCGGGAGGCTCGCGAGCGGCAGGAGGCGGAAATCCGGCCTCCCAAGCAGAAAATCACTGACCCATCTGAGCTTGCGGATTATCGTCTGCGAAAACGAAAGGAATTTGAGGATTTAATTCGGAGAGTGCGGTGGAATGTGAGTGTTTGGATCAAGTATGCGCAGTGGGAGGAGTCCCAGAAGGACTTCAAGCGTGCACGGTCTGTTTGGGAGCGTGCCCTTGAGGTGGATTATCGGAATCATACGCTATGGCTCAAGTATGCGGAGGTGGAGATGAAGAACAAGTTCATTAATCATGCTAGGAATGTGTGGGACCGTGCTGTCCAACTCTTGCCTAGAGTGGACCAGCTCTGGTACAAGTACATTCACATGGAGGAGATGATTGGGAATGTGGCTGGTGCTCGGCAAATTTTCGAGAGGTGGATGACTTGGATGCCGGACCAGCAAGGCTGGCTATCCTTCATCAAATTTGAGCTTCGGTATAATGAAGTTGAGCGTGCTAGAGGGATTTTTGAGCGGTTTGTACAATGTCATCCGAAAGTTGCAGCTTGGATTCGGTTTGCCAAATTTGAGATGAAGAATGGTGATGTTGCGAGGGCGAGGAATGTGTATGAGAGGGCAGTGGAGAAGTTAGCTGATGATGAGGAGGCTGAGCAGCTGTTTGTGGCTTTCGCTGAATTTGAAGAGCGGTGCAAAGAGACCGAGCGAGCTCGGAGTATCTATAAATTTGCACTGGATCACATACCCAAAGGAAGAGCTGAGGACTTGTATAAGAAGTTTGTATCTTTTGAGAAGCAATATGGCGATAGAGAAGGGATTGAGGATGCCATTGTCGGAAAGAGGAGGTTTCAGTATGAGGATGAGGTTAGGAAGAATCCTCTTAATTACGACTCTTGGTTTGATTATATAAGGCTGGAAGAGAGTGCAGGGAATAAGGACAGAATCAGAGAGGTTTATGAGCGAGCTGTTGCTAATGTTCCTCCTGCTCCTGAGAAGCGGTATTGGCAGCGATATATTTATCTGTGGATTAATTATGCACTTTACGAGGAACTTGATACTGGAGATGTGGAACGTACACGAGATGTCTATAGGGAGTGCCTTAAATTGATTCCTCATGAGAAATTTTCATTTGCAAAAATTTGGCTTCTTGCTGCTCAGTTTGAGATACGGCAGCTAAATCTCACGGGTGCACGCCAGATTCTTGGTACTGCAATAGGCAAGGCACCAAAAGATAAGATTTTCAAGAAGTATATTGAGATTGAGCTGCAACTTGCAAATATAGATCGTTGTCGGAAGTTATATGAAAAGTATCTAGAGTGGGCACCACACAATTGCTATGCATGGAGCAAGTATGCAGAGTTAGAGAAATCTTTGGGTGAGACAGAACGTGCAAGGGCCCTTTTTGAACTCGCCATCAGCCAATTAGAACTTGACATGCCTGAAGTGTTATGGAAGGCATACATCGACTTTGAACTGTCAGAATTTGAGTTTGATAGAACCAGACAACTTTATGAGAGACTCCTAGACCGGACAAAACATCTAAAGGTGTGGATCAGTTATGCAAAATTTGAGGCATCCGCTATGGTGGGGGGAAATGACGAGGATTCAGATTTGGCAGAAGCTCCTTCCGAGGATGATATAAATGAAGAGAAGAAACAATGTATTGAGCGTGCTAGAAGTAAGCAGTTTCTAATAATGTTATATAGTTTATTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0000974 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0071007 GO:0071010 GO:0071011 GO:0071012 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

HAT Suf TPR_8

Protein Analysis

616

Amino Acids

74.0

Weight (kDa)

7.55

Isoelectric Point (pI)

44.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_PRP39_C	PF23241	76 - 191	7.9e-14	PRP39 C-terminal HAT repeat
HAT_PRP39_N	PF23240	77 - 187	6.6e-09	PRP39 N-terminal HAT repeat
HAT_Syf1_CNRKL1_N	PF23233	79 - 224	4.1e-18	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
Suf	PF05843	80 - 319	8.4e-12	Suppressor of forked protein (Suf)
HAT_Syf1_CNRKL1_C	PF23231	92 - 153	8.1e-08	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
HAT_Syf1_CNRKL1_C	PF23231	125 - 240	3.9e-10	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
HAT_PRP39_N	PF23240	174 - 304	3.4e-12	PRP39 N-terminal HAT repeat
HAT_PRP39_C	PF23241	193 - 294	1.8e-13	PRP39 C-terminal HAT repeat
HAT	PF02184	207 - 235	1.2e-12	HAT (Half-A-TPR) repeat
HAT_Syf1_CNRKL1_C	PF23231	241 - 321	6.9e-11	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
HAT_PRP39_N	PF23240	324 - 449	2.7e-07	PRP39 N-terminal HAT repeat
HAT_Syf1_CNRKL1_N	PF23233	327 - 486	9e-15	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_C	PF23241	339 - 449	1.9e-08	PRP39 C-terminal HAT repeat
HAT_Syf1_CNRKL1_C	PF23231	398 - 544	4.7e-13	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
HAT_Syf1_CNRKL1_N	PF23233	458 - 571	2e-07	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_N	PF23240	458 - 555	2.1e-11	PRP39 N-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13210 AT5G41770 AT5G45990 AT5G45990
fragaria_vesca	FvH4_3g03250 FvH4_5g04070 FvH4_5g04070 FvH4_5g04070 FvH4_5g04070
malus_domestica	MD06G1102000.v1.1 MD14G1121300.v1.1
prunus_persica	Prupe.5G115100_v2.0.a1
pyrus_communis	pycom06g09690
rosa_chinensis	RchiOBHm_Chr5g0005001 RchiOBHm_Chr7g0195451
rosa_laevigata	RLG00000004120 RLG00000031279
rosa_multiflora	Rmu_co8413909.1_g000001 Rmu_sc0010714.1_g000003 Rmu_sc0016543.1_g000004 Rmu_sc0018163.1_g000001 Rmu_sc0020160.1_g000003
rosa_roxburghii	Rroxscaffold_3G00260470
rosa_rugosa	Rorug04G0415100 Rorug04G0460000 Rorug07G0023200
rosa_samantha	Rh5AG042700 Rh5BG042400 Rh5BG086900 Rh5BG087100 Rh5CG047200 Rh5DG042700 Rh7AG150800 Rh7BG152400 Rh7CG156000 Rh7DG151800
rosa_wichuraiana	Rw5G004150 Rw7G012870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	452
Acc16I	TGCGCA	1 cut(s)	294
Acc65I	GGTACC	1 cut(s)	36
AccB1I	GGYRCC	3 cut(s)	36, 1354, 1453
AccBSI	CCGCTC	3 cut(s)	151, 649, 820
AccII	CGCG	1 cut(s)	147
AclWI	GGATC	3 cut(s)	290, 876, 1691
AcoI	YGGCCR	1 cut(s)	74
AcuI	CTGAAG	1 cut(s)	1593
AfaI	GTAC	6 cut(s)	38, 488, 494, 657, 1207, 1339
AfiI	CCNNNNNNNGG	3 cut(s)	32, 139, 358
AgsI	TTSAA	5 cut(s)	322, 815, 1375, 1538, 1604
Alw21I	GWGCWC	4 cut(s)	331, 535, 844, 1324
Alw26I	GTCTC	3 cut(s)	824, 1505, 1642
Alw44I	GTGCAC	2 cut(s)	327, 1320
AlwI	GGATC	3 cut(s)	290, 876, 1691
AlwNI	CAGNNNCTG	1 cut(s)	107
AoxI	GGCC	3 cut(s)	74, 170, 1527
ApaI	GGGCCC	1 cut(s)	1531
ApaLI	GTGCAC	2 cut(s)	327, 1320
ApeKI	GCWGC	6 cut(s)	677, 787, 1138, 1283, 1303, 1396
ArsI	GACNNNNNNTTYG	2 cut(s)	1013, 1045
AseI	ATTAAT	2 cut(s)	423, 1161
Asp700I	GAANNNNTTC	2 cut(s)	317, 416
Asp718I	GGTACC	1 cut(s)	36
AspA2I	CCTAGG	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	295
AspS9I	GGNCC	5 cut(s)	445, 475, 571, 1527, 1528
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	2 cut(s)	728, 1520
AvaII	GGWCC	3 cut(s)	445, 475, 571
AvrII	CCTAGG	1 cut(s)	31
BaeGI	GKGCMC	5 cut(s)	331, 352, 1324, 1456, 1531
BaeI	ACNNNNGTAYC	2 cut(s)	45, 78
BanI	GGYRCC	3 cut(s)	36, 1354, 1453
BanII	GRGCYC	3 cut(s)	8, 844, 1531
BauI	CACGAG	1 cut(s)	1209
Bbv12I	GWGCWC	4 cut(s)	331, 535, 844, 1324
BbvCI	CCTCAGC	1 cut(s)	891
BbvI	GCAGC	6 cut(s)	689, 799, 1150, 1270, 1315, 1383
BccI	CCATC	2 cut(s)	205, 1553
BceAI	ACGGC	2 cut(s)	89, 1316
BciVI	GTATCC	1 cut(s)	46
BcnI	CCSGG	1 cut(s)	137
BcoDI	GTCTC	3 cut(s)	824, 1505, 1642
BfaI	CTAG	8 cut(s)	32, 81, 432, 468, 633, 1445, 1655, 1806
BfmI	CTRYAG	1 cut(s)	1219
BfuI	GTATCC	1 cut(s)	46
BisI	GCNGC	7 cut(s)	152, 678, 788, 1139, 1284, 1304, 1397
BlnI	CCTAGG	1 cut(s)	31
BlpI	GCTNAGC	1 cut(s)	783
BlsI	GCNGC	7 cut(s)	153, 679, 789, 1140, 1285, 1305, 1398
Bme1390I	CCNGG	1 cut(s)	137
Bme18I	GGWCC	3 cut(s)	445, 475, 571
BmgT120I	GGNCC	5 cut(s)	445, 475, 571, 1527, 1528
BmiI	GGNNCC	5 cut(s)	38, 446, 1356, 1455, 1529
BmrFI	CCNGG	1 cut(s)	137
BmsI	GCATC	3 cut(s)	555, 946, 1715
BpmI	CTGGAG	1 cut(s)	1212
Bpu10I	CCTNAGC	1 cut(s)	891
Bpu1102I	GCTNAGC	1 cut(s)	783
BpuEI	CTTGAG	2 cut(s)	371, 374
BpuMI	CCSGG	1 cut(s)	137
BsaI	GGTCTC	1 cut(s)	824
BsaJI	CCNNGG	3 cut(s)	31, 71, 1761
BsaWI	WCCGGW	1 cut(s)	1659
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 139, 358
Bse1I	ACTGG	2 cut(s)	870, 1195
BseDI	CCNNGG	3 cut(s)	31, 71, 1761
BseGI	GGATG	7 cut(s)	561, 570, 664, 961, 997, 1706, 1771
BseLI	CCNNNNNNNGG	3 cut(s)	32, 139, 358
BseMII	CTCAG	5 cut(s)	192, 774, 882, 1113, 1301
BseNI	ACTGG	2 cut(s)	870, 1195
BseRI	GAGGAG	4 cut(s)	317, 521, 791, 988
BseSI	GKGCMC	5 cut(s)	331, 352, 1324, 1456, 1531
BseX3I	CGGCCG	1 cut(s)	74
BseXI	GCAGC	6 cut(s)	689, 799, 1150, 1270, 1315, 1383
BseYI	CCCAGC	1 cut(s)	25
BsgI	GTGCAG	1 cut(s)	1077
Bsh1236I	CGCG	1 cut(s)	147
Bsh1285I	CGRYCG	1 cut(s)	77
BshFI	GGCC	3 cut(s)	76, 172, 1529
BshNI	GGYRCC	3 cut(s)	36, 1354, 1453
BsiEI	CGRYCG	1 cut(s)	77
BsiHKAI	GWGCWC	4 cut(s)	331, 535, 844, 1324
BsiSI	CCGG	4 cut(s)	136, 169, 569, 1660
BslFI	GGGAC	2 cut(s)	292, 458
BslI	CCNNNNNNNGG	3 cut(s)	32, 139, 358
BsmAI	GTCTC	3 cut(s)	824, 1505, 1642
BsmFI	GGGAC	2 cut(s)	292, 458
BsnI	GGCC	3 cut(s)	76, 172, 1529
Bso31I	GGTCTC	1 cut(s)	824
Bsp120I	GGGCCC	1 cut(s)	1527
Bsp1286I	GDGCHC	8 cut(s)	8, 331, 352, 535, 844, 1324, 1456, 1531
Bsp1407I	TGTACA	1 cut(s)	655
Bsp143I	GATC	4 cut(s)	282, 868, 1414, 1683
Bsp1720I	GCTNAGC	1 cut(s)	783
Bsp68I	TCGCGA	1 cut(s)	147
BspANI	GGCC	3 cut(s)	76, 172, 1529
BspCNI	CTCAG	5 cut(s)	193, 775, 883, 1114, 1300
BspFNI	CGCG	1 cut(s)	147
BspHI	TCATGA	1 cut(s)	1246
BspLI	GGNNCC	5 cut(s)	38, 446, 1356, 1455, 1529
BspPI	GGATC	3 cut(s)	290, 876, 1691
BspQI	GCTCTTC	2 cut(s)	810, 880
BspT107I	GGYRCC	3 cut(s)	36, 1354, 1453
BspTNI	GGTCTC	1 cut(s)	824
BsrBI	CCGCTC	3 cut(s)	151, 649, 820
BsrGI	TGTACA	1 cut(s)	655
BsrI	ACTGG	2 cut(s)	870, 1195
BssECI	CCNNGG	3 cut(s)	31, 71, 1761
BssMI	GATC	4 cut(s)	282, 868, 1414, 1683
BssSI	CACGAG	1 cut(s)	1209
BssT1I	CCWWGG	1 cut(s)	31
Bst2BI	CACGAG	1 cut(s)	1209
Bst4CI	ACNGT	3 cut(s)	333, 449, 1608
Bst6I	CTCTTC	4 cut(s)	810, 880, 1044, 1773
BstAUI	TGTACA	1 cut(s)	655
BstDEI	CTNAG	5 cut(s)	201, 783, 891, 1122, 1287
BstDSI	CCRYGG	1 cut(s)	71
BstENI	CCTNNNNNAGG	1 cut(s)	137
BstF5I	GGATG	7 cut(s)	561, 570, 664, 961, 997, 1706, 1771
BstFNI	CGCG	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	4 cut(s)	285, 871, 1417, 1686
BstMAI	GTCTC	3 cut(s)	824, 1505, 1642
BstMBI	GATC	4 cut(s)	282, 868, 1414, 1683
BstMCI	CGRYCG	1 cut(s)	77
BstMWI	GCNNNNNNNGC	6 cut(s)	26, 73, 178, 574, 583, 1135
BstNSI	RCATGY	1 cut(s)	1570
BstSCI	CCNGG	1 cut(s)	135
BstSFI	CTRYAG	1 cut(s)	1219
BstSLI	GKGCMC	5 cut(s)	331, 352, 1324, 1456, 1531
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	6 cut(s)	689, 799, 1150, 1270, 1315, 1383
BstXI	CCANNNNNNTGG	1 cut(s)	1334
BstZI	CGGCCG	1 cut(s)	74
BsuI	GTATCC	1 cut(s)	46
BsuRI	GGCC	3 cut(s)	76, 172, 1529
BtgI	CCRYGG	1 cut(s)	71
BtsCI	GGATG	7 cut(s)	561, 570, 664, 961, 997, 1706, 1771
BtsI	GCAGTG	2 cut(s)	302, 759
BtsIMutI	CAGTG	4 cut(s)	189, 302, 759, 863
BtuMI	TCGCGA	1 cut(s)	147
CaiI	CAGNNNCTG	1 cut(s)	107
CciI	TCATGA	1 cut(s)	1246
CfoI	GCGC	1 cut(s)	295
Cfr13I	GGNCC	5 cut(s)	445, 475, 571, 1527, 1528
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	6 cut(s)	37, 487, 493, 656, 1206, 1338
CviAII	CATG	5 cut(s)	428, 502, 1247, 1473, 1567
CviQI	GTAC	6 cut(s)	37, 487, 493, 656, 1206, 1338
DdeI	CTNAG	5 cut(s)	201, 783, 891, 1122, 1287
DpnI	GATC	4 cut(s)	284, 870, 1416, 1685
DpnII	GATC	4 cut(s)	282, 868, 1414, 1683
DrdI	GACNNNNNNGTC	1 cut(s)	452
DseDI	GACNNNNNNGTC	1 cut(s)	452
EaeI	YGGCCR	1 cut(s)	74
EagI	CGGCCG	1 cut(s)	74
Eam1104I	CTCTTC	4 cut(s)	810, 880, 1044, 1773
EarI	CTCTTC	4 cut(s)	810, 880, 1044, 1773
EciI	GGCGGA	1 cut(s)	176
Ecl136II	GAGCTC	1 cut(s)	842
EclXI	CGGCCG	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	31
Eco24I	GRGCYC	3 cut(s)	8, 844, 1531
Eco31I	GGTCTC	1 cut(s)	824
Eco47I	GGWCC	3 cut(s)	445, 475, 571
Eco52I	CGGCCG	1 cut(s)	74
Eco53kI	GAGCTC	1 cut(s)	842
Eco57I	CTGAAG	1 cut(s)	1593
EcoICRI	GAGCTC	1 cut(s)	842
EcoNI	CCTNNNNNAGG	1 cut(s)	137
EcoO109I	RGGNCCY	2 cut(s)	1527, 1528
EcoT14I	CCWWGG	1 cut(s)	31
EcoT22I	ATGCAT	1 cut(s)	1474
EcoT38I	GRGCYC	3 cut(s)	8, 844, 1531
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	5 cut(s)	431, 505, 1250, 1476, 1570
FaqI	GGGAC	2 cut(s)	292, 458
FatI	CATG	5 cut(s)	427, 501, 1246, 1472, 1566
Fnu4HI	GCNGC	7 cut(s)	152, 678, 788, 1139, 1284, 1304, 1397
FokI	GGATG	7 cut(s)	568, 577, 651, 968, 1004, 1693, 1778
FriOI	GRGCYC	3 cut(s)	8, 844, 1531
Fsp4HI	GCNGC	7 cut(s)	152, 678, 788, 1139, 1284, 1304, 1397
FspBI	CTAG	8 cut(s)	32, 81, 432, 468, 633, 1445, 1655, 1806
FspI	TGCGCA	1 cut(s)	294
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	7 cut(s)	152, 678, 788, 1139, 1284, 1304, 1397
GsaI	CCCAGC	1 cut(s)	29
GsuI	CTGGAG	1 cut(s)	1212
HaeIII	GGCC	3 cut(s)	76, 172, 1529
HapII	CCGG	4 cut(s)	136, 169, 569, 1660
HgaI	GACGC	1 cut(s)	26
HhaI	GCGC	1 cut(s)	295
Hin1II	CATG	5 cut(s)	431, 505, 1250, 1476, 1570
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HpaII	CCGG	4 cut(s)	136, 169, 569, 1660
HphI	GGTGA	2 cut(s)	728, 1520
Hpy166II	GTNNAC	4 cut(s)	329, 475, 1208, 1322
Hpy188III	TCNNGA	6 cut(s)	146, 547, 1121, 1247, 1375, 1445
Hpy8I	GTNNAC	4 cut(s)	329, 475, 1208, 1322
HpyAV	CCTTC	5 cut(s)	307, 601, 938, 1579, 1767
HpyCH4III	ACNGT	3 cut(s)	333, 449, 1608
HpyCH4IV	ACGT	2 cut(s)	1204, 1519
HpyF10VI	GCNNNNNNNGC	6 cut(s)	26, 73, 178, 574, 583, 1135
HpyF3I	CTNAG	5 cut(s)	201, 783, 891, 1122, 1287
HpySE526I	ACGT	2 cut(s)	1204, 1519
Hsp92II	CATG	5 cut(s)	431, 505, 1250, 1476, 1570
HspAI	GCGC	1 cut(s)	293
KpnI	GGTACC	1 cut(s)	40
Kzo9I	GATC	4 cut(s)	282, 868, 1414, 1683
LguI	GCTCTTC	2 cut(s)	810, 880
LmnI	GCTCC	4 cut(s)	343, 1123, 1476, 1759
Lsp1109I	GCAGC	6 cut(s)	689, 799, 1150, 1270, 1315, 1383
LweI	GCATC	3 cut(s)	555, 946, 1715
MaeI	CTAG	8 cut(s)	32, 81, 432, 468, 633, 1445, 1655, 1806
MaeII	ACGT	2 cut(s)	1204, 1519
MalI	GATC	4 cut(s)	284, 870, 1416, 1685
MbiI	CCGCTC	3 cut(s)	151, 649, 820
MboI	GATC	4 cut(s)	282, 868, 1414, 1683
MboII	GAAGA	8 cut(s)	421, 721, 827, 897, 1015, 1061, 1790, 1795
MfeI	CAATTG	1 cut(s)	1462
MhlI	GDGCHC	8 cut(s)	8, 331, 352, 535, 844, 1324, 1456, 1531
MlyI	GAGTC	3 cut(s)	314, 1016, 1644
MmeI	TCCRAC	3 cut(s)	481, 946, 1403
Mph1103I	ATGCAT	1 cut(s)	1474
MroXI	GAANNNNTTC	2 cut(s)	317, 416
MseI	TTAA	6 cut(s)	87, 248, 423, 1014, 1161, 1233
MslI	CAYNNNNRTG	1 cut(s)	500
MspA1I	CMGCKG	1 cut(s)	790
MspI	CCGG	4 cut(s)	136, 169, 569, 1660
MspR9I	CCNGG	1 cut(s)	137
MunI	CAATTG	1 cut(s)	1462
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	6 cut(s)	26, 73, 178, 574, 583, 1135
NciI	CCSGG	1 cut(s)	137
NdeII	GATC	4 cut(s)	282, 868, 1414, 1683
NlaIII	CATG	5 cut(s)	431, 505, 1250, 1476, 1570
NlaIV	GGNNCC	5 cut(s)	38, 446, 1356, 1455, 1529
NmeAIII	GCCGAG	2 cut(s)	148, 514
NruI	TCGCGA	1 cut(s)	147
NsbI	TGCGCA	1 cut(s)	294
NsiI	ATGCAT	1 cut(s)	1474
NspI	RCATGY	1 cut(s)	1570
PagI	TCATGA	1 cut(s)	1246
PciSI	GCTCTTC	2 cut(s)	810, 880
PdmI	GAANNNNTTC	2 cut(s)	317, 416
PfeI	GAWTC	7 cut(s)	370, 685, 1006, 1074, 1240, 1330, 1736
PfoI	TCCNGGA	1 cut(s)	135
PkrI	GCNGC	7 cut(s)	153, 679, 789, 1140, 1285, 1305, 1398
PleI	GAGTC	3 cut(s)	313, 1016, 1644
PpsI	GAGTC	3 cut(s)	313, 1016, 1644
PshBI	ATTAAT	2 cut(s)	423, 1161
Psp124BI	GAGCTC	1 cut(s)	844
PspFI	CCCAGC	1 cut(s)	25
PspN4I	GGNNCC	5 cut(s)	38, 446, 1356, 1455, 1529
PspOMI	GGGCCC	1 cut(s)	1527
PspPI	GGNCC	5 cut(s)	445, 475, 571, 1527, 1528
PstNI	CAGNNNCTG	1 cut(s)	107
PvuII	CAGCTG	1 cut(s)	790
RruI	TCGCGA	1 cut(s)	147
RsaI	GTAC	6 cut(s)	38, 488, 494, 657, 1207, 1339
RsaNI	GTAC	6 cut(s)	37, 487, 493, 656, 1206, 1338
RseI	CAYNNNNRTG	1 cut(s)	500
SacI	GAGCTC	1 cut(s)	844
SapI	GCTCTTC	2 cut(s)	810, 880
SaqAI	TTAA	6 cut(s)	87, 248, 423, 1014, 1161, 1233
SatI	GCNGC	7 cut(s)	152, 678, 788, 1139, 1284, 1304, 1397
Sau3AI	GATC	4 cut(s)	282, 868, 1414, 1683
Sau96I	GGNCC	5 cut(s)	445, 475, 571, 1527, 1528
SchI	GAGTC	3 cut(s)	314, 1016, 1644
ScrFI	CCNGG	1 cut(s)	137
SduI	GDGCHC	8 cut(s)	8, 331, 352, 535, 844, 1324, 1456, 1531
SfaNI	GCATC	3 cut(s)	555, 946, 1715
SfcI	CTRYAG	1 cut(s)	1219
SinI	GGWCC	3 cut(s)	445, 475, 571
SmiMI	CAYNNNNRTG	1 cut(s)	500
SmlI	CTYRAG	2 cut(s)	353, 386
SmoI	CTYRAG	2 cut(s)	353, 386
SspMI	CTAG	8 cut(s)	32, 81, 432, 468, 633, 1445, 1655, 1806
SstI	GAGCTC	1 cut(s)	844
StyD4I	CCNGG	1 cut(s)	135
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	3 cut(s)	333, 449, 1608
TaiI	ACGT	2 cut(s)	1207, 1522
TaqI	TCGA	2 cut(s)	546, 1596
TaqII	GACCGA	1 cut(s)	848
TatI	WGTACW	2 cut(s)	492, 655
TauI	GCSGC	1 cut(s)	154
TfiI	GAWTC	7 cut(s)	370, 685, 1006, 1074, 1240, 1330, 1736
Tru1I	TTAA	6 cut(s)	87, 248, 423, 1014, 1161, 1233
Tru9I	TTAA	6 cut(s)	87, 248, 423, 1014, 1161, 1233
TscAI	CASTG	4 cut(s)	196, 302, 759, 870
TseI	GCWGC	6 cut(s)	677, 787, 1138, 1283, 1303, 1396
TspDTI	ATGAA	8 cut(s)	409, 422, 583, 633, 722, 1248, 1449, 1791
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	4 cut(s)	196, 302, 759, 870
VneI	GTGCAC	2 cut(s)	327, 1320
VpaK11BI	GGWCC	3 cut(s)	445, 475, 571
VspI	ATTAAT	2 cut(s)	423, 1161
XagI	CCTNNNNNAGG	1 cut(s)	137
XbaI	TCTAGA	1 cut(s)	1444
XceI	RCATGY	1 cut(s)	1570
XmaJI	CCTAGG	1 cut(s)	31
XmnI	GAANNNNTTC	2 cut(s)	317, 416
XspI	CTAG	8 cut(s)	32, 81, 432, 468, 633, 1445, 1655, 1806
Zsp2I	ATGCAT	1 cut(s)	1474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.