Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0002910

Physical Location & Seq

Genomic Coordinates Forward (+)

23897525 .. 23900376

Gene Structure 2852 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1102000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1635 bp

ATGGGCTCCTACAAGGACGCAGACCCTTCCCTAGGGTTCCTAACCCGAAAGGACACTGAGGTCAAACTCCCACGACCCACTAGGGTTAAGAACAAAACCCCAGCCCCCGTCCAAATCACTGCAGAGCAAATTCTTCGGGAGGCACGTGAGCGTCAGGAGGCTGAAATTCGACCTCCCAAACAGAAGATAACTGATCCCACTGAGCTTGCTGATTACCGTCTCCGTAAGCGCAAAGAATTCGAGGACCTAATCCGGCGTGTGAGGTGGAATGTCAGTGTCTGGATCAAGTATGCACAGTGGGAGGAGTCCCAGAAGGACTTCAAGCGTGCTCGCTCGGTTTGGGAGCGTGCCCTTGAGGTCGATTATCGAAACCACACCCTGTGGCTCAAGTATGCGGAGGTGGAGATGAAGAACAAGTTCATTAACCATGCGAGAAATGTGTGGGACCGTGCTGTTACGCTCTTACCCAGAGTTGACCAGCTCTGGTACAAGTACATTCACATGGAAGAGATTATAGGGAATGTGGCTGGTGCTCGACAGATATATGAGAGGTGGATGAATTGGATGCCGGACCAGCAAGGCTGGCTCTCCTTTATCAAGTTTGAGCTTCGCTATAATGAAGTGGAGCGTGCTAGAGCGATTTTTGAGCGGTTCGTACAATGTCATCCAAAAGTTGGTGCTTGGATTCGGTTTGCCAAGTTTGAGATGAAGAATGGTGAGGTCGCGAGGGCAAGAAATGTATATGAGAGAGCAGTGGAGATTCTAGCCGATGATGAGGAGGCTGAGCAGTTATTTGTGGCTTTCGCTGAATTCGAAGAGCGGTGCAAAGAAACTGATCGAGCAAGGTGTATTTATAAGTTTGCACTTGATCATATACCCAAAGGAAGGGCCGATGACTTATATAAGAAGTTTGTGGGTTTCGAGAAGCAGTATGGAGATAGGCAAGGGATTGAAGATGCAATTGTGGGAAAGAGGAGGTTCCAGTATGAAGATGAGGTTAGGAAGAACCCTCGTAATTATGATGCATGGTTTGATTATATAAGGCTAGAAGAGAGTGCAGGGAATAAGGATAGAATTAGAGAAGTTTACGAGCGAGCAATTGCTAATGTTCCTCCGGCTCCGGAGAAGCGATATTGGCAACGATACATTTATTTATGGATTAACTATGCACTCTACGAGGAGCTTGATGCTGAAGACATGGAACGTACTCGAGATGTGTACAGGGAGTGCCTTAATCTGATTCCTCACCAGAAGTTTTCGTTTGCAAAAATATGGCTTCTCGCTGCCCAGTTTGAGATACGGCAGCTGAATCTCAAGGGTGCACGACAGATCCTTGGCAATGCAATAGGAAAGGCACCCAAAGATAAGATATTTAAGAAGTATATTGAGATTGAGCTGAACCTTGGGAATATGGATAGATGTCGGAAGTTGTACGAAAAGTATCTGGAGTGGTCCCCAGAAAATTGTTATGCGTGGACCAAGTATGCAGAGTTAGAGCAATCTTTATGCGAGACAGAACGAACCAGGTCGCTTTTTGAACTTGCCATTGCCCAGCCATCACTTGACATGCCTGAGTTGTTGTGGAAGGTAAGACACAGGAACATCCTTCTTTCTAAGACAACTTTGATTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0000974 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0071007 GO:0071010 GO:0071011 GO:0071012 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

HAT Suf TPR_8

Protein Analysis

545

Amino Acids

65.59

Weight (kDa)

9.0

Isoelectric Point (pI)

46.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_PRP39_C	PF23241	76 - 191	3.7e-14	PRP39 C-terminal HAT repeat
HAT_PRP39_N	PF23240	77 - 187	5.5e-09	PRP39 N-terminal HAT repeat
HAT_Syf1_CNRKL1_N	PF23233	79 - 224	1.3e-17	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_Syf1_CNRKL1_C	PF23231	92 - 154	4.8e-08	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
HAT_Syf1_CNRKL1_C	PF23231	126 - 240	1.6e-10	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
HAT_PRP39_N	PF23240	174 - 304	2.2e-12	PRP39 N-terminal HAT repeat
HAT_PRP39_C	PF23241	193 - 294	6.2e-14	PRP39 C-terminal HAT repeat
HAT	PF02184	207 - 235	6.2e-12	HAT (Half-A-TPR) repeat
HAT_Syf1_CNRKL1_C	PF23231	241 - 320	7.6e-11	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
HAT_PRP39_N	PF23240	324 - 449	3.6e-07	PRP39 N-terminal HAT repeat
HAT_Syf1_CNRKL1_N	PF23233	327 - 487	1.9e-14	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_C	PF23241	338 - 450	7.2e-09	PRP39 C-terminal HAT repeat
HAT_Syf1_CNRKL1_C	PF23231	396 - 516	1.5e-09	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13210 AT5G41770 AT5G45990 AT5G45990
fragaria_vesca	FvH4_3g03250 FvH4_5g04070 FvH4_5g04070 FvH4_5g04070 FvH4_5g04070
malus_domestica	MD06G1102000.v1.1 MD14G1121300.v1.1
prunus_persica	Prupe.5G115100_v2.0.a1
pyrus_communis	pycom06g09690
rosa_chinensis	RchiOBHm_Chr5g0005001 RchiOBHm_Chr7g0195451
rosa_laevigata	RLG00000004120 RLG00000031279
rosa_multiflora	Rmu_co8413909.1_g000001 Rmu_sc0010714.1_g000003 Rmu_sc0016543.1_g000004 Rmu_sc0018163.1_g000001 Rmu_sc0020160.1_g000003
rosa_roxburghii	Rroxscaffold_3G00260470
rosa_rugosa	Rorug04G0415100 Rorug04G0460000 Rorug07G0023200
rosa_samantha	Rh5AG042700 Rh5BG042400 Rh5BG086900 Rh5BG087100 Rh5CG047200 Rh5DG042700 Rh7AG150800 Rh7BG152400 Rh7CG156000 Rh7DG151800
rosa_wichuraiana	Rw5G004150 Rw7G012870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	855
AasI	GACNNNNNNGTC	1 cut(s)	59
AccB1I	GGYRCC	1 cut(s)	1354
AccB7I	CCANNNNNTGG	1 cut(s)	674
AccBSI	CCGCTC	2 cut(s)	649, 820
AccII	CGCG	1 cut(s)	725
AccIII	TCCGGA	1 cut(s)	1120
AciI	CCGC	3 cut(s)	395, 649, 820
AclWI	GGATC	3 cut(s)	188, 290, 1324
AcsI	RAATTY	4 cut(s)	129, 165, 236, 809
AcuI	CTGAAG	1 cut(s)	1212
AcvI	CACGTG	1 cut(s)	146
AdeI	CACNNNGTG	1 cut(s)	381
AfaI	GTAC	6 cut(s)	488, 494, 657, 1207, 1220, 1433
AfiI	CCNNNNNNNGG	3 cut(s)	32, 674, 885
AgsI	TTSAA	3 cut(s)	322, 953, 1538
AjnI	CCWGG	1 cut(s)	1523
AluBI	AGCT	6 cut(s)	205, 481, 607, 1183, 1306, 1396
AluI	AGCT	6 cut(s)	205, 481, 607, 1183, 1306, 1396
Alw21I	GWGCWC	3 cut(s)	331, 535, 1324
Alw26I	GTCTC	2 cut(s)	224, 1505
Alw44I	GTGCAC	1 cut(s)	1320
AlwI	GGATC	3 cut(s)	188, 290, 1324
AlwNI	CAGNNNCTG	1 cut(s)	279
Ama87I	CYCGRG	1 cut(s)	1209
Aor13HI	TCCGGA	1 cut(s)	1120
AoxI	GGCC	1 cut(s)	888
ApaLI	GTGCAC	1 cut(s)	1320
ApeKI	GCWGC	2 cut(s)	1283, 1303
ApoI	RAATTY	4 cut(s)	129, 165, 236, 809
Asp700I	GAANNNNTTC	2 cut(s)	317, 416
AspA2I	CCTAGG	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	6 cut(s)	244, 445, 571, 888, 1452, 1476
AsuHPI	GGTGA	2 cut(s)	728, 1238
AsuII	TTCGAA	1 cut(s)	813
AvaI	CYCGRG	1 cut(s)	1209
AvaII	GGWCC	5 cut(s)	244, 445, 571, 1452, 1476
AvrII	CCTAGG	1 cut(s)	31
BaeGI	GKGCMC	2 cut(s)	352, 1324
BanI	GGYRCC	1 cut(s)	1354
BanII	GRGCYC	1 cut(s)	8
BbrPI	CACGTG	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	1200
Bbv12I	GWGCWC	3 cut(s)	331, 535, 1324
BbvI	GCAGC	2 cut(s)	1270, 1315
BccI	CCATC	1 cut(s)	1564
BceAI	ACGGC	1 cut(s)	1316
BcgI	CGANNNNNNTGC	4 cut(s)	116, 150, 220, 254
BciT130I	CCWGG	1 cut(s)	1525
BclI	TGATCA	1 cut(s)	868
BcoDI	GTCTC	2 cut(s)	224, 1505
BfaI	CTAG	5 cut(s)	32, 81, 633, 764, 1046
BfmI	CTRYAG	1 cut(s)	120
BisI	GCNGC	2 cut(s)	1284, 1304
BlnI	CCTAGG	1 cut(s)	31
BlpI	GCTNAGC	1 cut(s)	783
BlsI	GCNGC	2 cut(s)	1285, 1305
Bme1390I	CCNGG	1 cut(s)	1525
Bme18I	GGWCC	5 cut(s)	244, 445, 571, 1452, 1476
BmeT110I	CYCGRG	1 cut(s)	1209
BmgT120I	GGNCC	6 cut(s)	244, 445, 571, 888, 1452, 1476
BmiI	GGNNCC	7 cut(s)	7, 38, 446, 980, 1119, 1356, 1454
BmrFI	CCNGG	1 cut(s)	1525
BmrI	ACTGGG	1 cut(s)	1282
BmsI	GCATC	4 cut(s)	555, 946, 1012, 1177
BmuI	ACTGGG	1 cut(s)	1282
BpiI	GAAGAC	1 cut(s)	1200
BpmI	CTGGAG	1 cut(s)	1466
Bpu1102I	GCTNAGC	1 cut(s)	783
Bpu14I	TTCGAA	1 cut(s)	813
BpuEI	CTTGAG	3 cut(s)	371, 374, 1298
BsaAI	YACGTR	1 cut(s)	146
BsaJI	CCNNGG	3 cut(s)	31, 1333, 1402
BsaWI	WCCGGW	1 cut(s)	1120
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 674, 885
Bse1I	ACTGG	2 cut(s)	982, 1288
Bse3DI	GCAATG	2 cut(s)	1345, 1545
BseAI	TCCGGA	1 cut(s)	1120
BseBI	CCWGG	1 cut(s)	1525
BseDI	CCNNGG	3 cut(s)	31, 1333, 1402
BseGI	GGATG	4 cut(s)	561, 570, 664, 1602
BseLI	CCNNNNNNNGG	3 cut(s)	32, 674, 885
BseMI	GCAATG	2 cut(s)	1345, 1545
BseMII	CTCAG	4 cut(s)	48, 192, 774, 1563
BseNI	ACTGG	2 cut(s)	982, 1288
BseRI	GAGGAG	4 cut(s)	317, 791, 988, 1193
BseSI	GKGCMC	2 cut(s)	352, 1324
BseXI	GCAGC	2 cut(s)	1270, 1315
BseYI	CCCAGC	2 cut(s)	100, 1551
BsgI	GTGCAG	1 cut(s)	1077
Bsh1236I	CGCG	1 cut(s)	725
BshFI	GGCC	1 cut(s)	890
BshNI	GGYRCC	1 cut(s)	1354
BsiHKAI	GWGCWC	3 cut(s)	331, 535, 1324
BsiHKCI	CYCGRG	1 cut(s)	1209
BsiSI	CCGG	4 cut(s)	253, 569, 1115, 1121
BslFI	GGGAC	3 cut(s)	292, 458, 1438
BslI	CCNNNNNNNGG	3 cut(s)	32, 674, 885
BsmAI	GTCTC	2 cut(s)	224, 1505
BsmBI	CGTCTC	1 cut(s)	224
BsmFI	GGGAC	3 cut(s)	292, 458, 1438
BsnI	GGCC	1 cut(s)	890
BsoBI	CYCGRG	1 cut(s)	1209
Bsp119I	TTCGAA	1 cut(s)	813
Bsp1286I	GDGCHC	5 cut(s)	8, 331, 352, 535, 1324
Bsp13I	TCCGGA	1 cut(s)	1120
Bsp1407I	TGTACA	1 cut(s)	1218
Bsp143I	GATC	5 cut(s)	193, 282, 835, 868, 1329
Bsp1720I	GCTNAGC	1 cut(s)	783
Bsp68I	TCGCGA	1 cut(s)	725
BspACI	CCGC	3 cut(s)	395, 649, 820
BspANI	GGCC	1 cut(s)	890
BspCNI	CTCAG	4 cut(s)	49, 193, 775, 1564
BspEI	TCCGGA	1 cut(s)	1120
BspFNI	CGCG	1 cut(s)	725
BspLI	GGNNCC	7 cut(s)	7, 38, 446, 980, 1119, 1356, 1454
BspMAI	CTGCAG	1 cut(s)	124
BspPI	GGATC	3 cut(s)	188, 290, 1324
BspQI	GCTCTTC	1 cut(s)	810
BspT104I	TTCGAA	1 cut(s)	813
BspT107I	GGYRCC	1 cut(s)	1354
BsrBI	CCGCTC	2 cut(s)	649, 820
BsrDI	GCAATG	2 cut(s)	1345, 1545
BsrGI	TGTACA	1 cut(s)	1218
BsrI	ACTGG	2 cut(s)	982, 1288
BssECI	CCNNGG	3 cut(s)	31, 1333, 1402
BssMI	GATC	5 cut(s)	193, 282, 835, 868, 1329
BssT1I	CCWWGG	3 cut(s)	31, 1333, 1402
Bst2UI	CCWGG	1 cut(s)	1525
Bst4CI	ACNGT	3 cut(s)	218, 297, 449
Bst6I	CTCTTC	3 cut(s)	501, 810, 1044
BstAUI	TGTACA	1 cut(s)	1218
BstBAI	YACGTR	1 cut(s)	146
BstBI	TTCGAA	1 cut(s)	813
BstC8I	GCNNGC	7 cut(s)	207, 327, 331, 348, 584, 630, 1095
BstDEI	CTNAG	5 cut(s)	57, 201, 783, 1572, 1614
BstENI	CCTNNNNNAGG	1 cut(s)	30
BstF5I	GGATG	4 cut(s)	561, 570, 664, 1602
BstFNI	CGCG	1 cut(s)	725
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	5 cut(s)	196, 285, 838, 871, 1332
BstMAI	GTCTC	2 cut(s)	224, 1505
BstMBI	GATC	5 cut(s)	193, 282, 835, 868, 1329
BstMWI	GCNNNNNNNGC	3 cut(s)	574, 583, 1135
BstNI	CCWGG	1 cut(s)	1525
BstNSI	RCATGY	1 cut(s)	1570
BstSCI	CCNGG	1 cut(s)	1523
BstSFI	CTRYAG	1 cut(s)	120
BstSLI	GKGCMC	2 cut(s)	352, 1324
BstUI	CGCG	1 cut(s)	725
BstV1I	GCAGC	2 cut(s)	1270, 1315
BstV2I	GAAGAC	1 cut(s)	1200
BstX2I	RGATCY	1 cut(s)	1329
BstYI	RGATCY	1 cut(s)	1329
BsuRI	GGCC	1 cut(s)	890
BtsCI	GGATG	4 cut(s)	561, 570, 664, 1602
BtsI	GCAGTG	2 cut(s)	117, 759
BtsIMutI	CAGTG	6 cut(s)	54, 117, 198, 280, 302, 759
BtuMI	TCGCGA	1 cut(s)	725
Cac8I	GCNNGC	7 cut(s)	207, 327, 331, 348, 584, 630, 1095
CaiI	CAGNNNCTG	1 cut(s)	279
CfoI	GCGC	1 cut(s)	231
Cfr13I	GGNCC	6 cut(s)	244, 445, 571, 888, 1452, 1476
CseI	GACGC	2 cut(s)	26, 140
CsiI	ACCWGGT	1 cut(s)	1523
Csp6I	GTAC	6 cut(s)	487, 493, 656, 1206, 1219, 1432
CspCI	CAANNNNNGTGG	2 cut(s)	187, 222
CviAII	CATG	5 cut(s)	428, 502, 1026, 1198, 1567
CviQI	GTAC	6 cut(s)	487, 493, 656, 1206, 1219, 1432
DdeI	CTNAG	5 cut(s)	57, 201, 783, 1572, 1614
DpnI	GATC	5 cut(s)	195, 284, 837, 870, 1331
DpnII	GATC	5 cut(s)	193, 282, 835, 868, 1329
DraIII	CACNNNGTG	1 cut(s)	381
DrdI	GACNNNNNNGTC	1 cut(s)	59
DseDI	GACNNNNNNGTC	1 cut(s)	59
Eam1104I	CTCTTC	3 cut(s)	501, 810, 1044
EarI	CTCTTC	3 cut(s)	501, 810, 1044
Eco130I	CCWWGG	3 cut(s)	31, 1333, 1402
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	5 cut(s)	244, 445, 571, 1452, 1476
Eco57I	CTGAAG	1 cut(s)	1212
Eco72I	CACGTG	1 cut(s)	146
Eco88I	CYCGRG	1 cut(s)	1209
EcoNI	CCTNNNNNAGG	1 cut(s)	30
EcoO109I	RGGNCCY	1 cut(s)	244
EcoRI	GAATTC	2 cut(s)	236, 809
EcoRII	CCWGG	1 cut(s)	1523
EcoT14I	CCWWGG	3 cut(s)	31, 1333, 1402
EcoT22I	ATGCAT	1 cut(s)	1027
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	3 cut(s)	31, 1333, 1402
Esp3I	CGTCTC	1 cut(s)	224
FaeI	CATG	5 cut(s)	431, 505, 1029, 1201, 1570
FaqI	GGGAC	3 cut(s)	292, 458, 1438
FatI	CATG	5 cut(s)	427, 501, 1025, 1197, 1566
FbaI	TGATCA	1 cut(s)	868
Fnu4HI	GCNGC	2 cut(s)	1284, 1304
FokI	GGATG	4 cut(s)	568, 577, 651, 1589
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	1284, 1304
FspBI	CTAG	5 cut(s)	32, 81, 633, 764, 1046
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	2 cut(s)	1284, 1304
GsaI	CCCAGC	2 cut(s)	104, 1555
GsuI	CTGGAG	1 cut(s)	1466
HaeIII	GGCC	1 cut(s)	890
HapII	CCGG	4 cut(s)	253, 569, 1115, 1121
HgaI	GACGC	2 cut(s)	26, 140
HhaI	GCGC	1 cut(s)	231
Hin1II	CATG	5 cut(s)	431, 505, 1029, 1201, 1570
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HinfI	GANTC	5 cut(s)	305, 685, 760, 1240, 1309
HpaII	CCGG	4 cut(s)	253, 569, 1115, 1121
HphI	GGTGA	2 cut(s)	728, 1238
Hpy166II	GTNNAC	5 cut(s)	475, 1087, 1219, 1322, 1476
Hpy188I	TCNGA	2 cut(s)	1239, 1425
Hpy188III	TCNNGA	8 cut(s)	137, 155, 280, 724, 922, 1121, 1211, 1445
Hpy8I	GTNNAC	5 cut(s)	475, 1087, 1219, 1322, 1476
HpyAV	CCTTC	5 cut(s)	36, 307, 879, 1579, 1616
HpyCH4III	ACNGT	3 cut(s)	218, 297, 449
HpyCH4IV	ACGT	2 cut(s)	145, 1204
HpyF10VI	GCNNNNNNNGC	3 cut(s)	574, 583, 1135
HpyF3I	CTNAG	5 cut(s)	57, 201, 783, 1572, 1614
HpySE526I	ACGT	2 cut(s)	145, 1204
Hsp92II	CATG	5 cut(s)	431, 505, 1029, 1201, 1570
HspAI	GCGC	1 cut(s)	229
Kpn2I	TCCGGA	1 cut(s)	1120
Ksp22I	TGATCA	1 cut(s)	868
Kzo9I	GATC	5 cut(s)	193, 282, 835, 868, 1329
LguI	GCTCTTC	1 cut(s)	810
LmnI	GCTCC	5 cut(s)	11, 343, 625, 1123, 1180
Lsp1109I	GCAGC	2 cut(s)	1270, 1315
LweI	GCATC	4 cut(s)	555, 946, 1012, 1177
MabI	ACCWGGT	1 cut(s)	1523
MaeI	CTAG	5 cut(s)	32, 81, 633, 764, 1046
MaeII	ACGT	2 cut(s)	145, 1204
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	5 cut(s)	195, 284, 837, 870, 1331
MbiI	CCGCTC	2 cut(s)	649, 820
MboI	GATC	5 cut(s)	193, 282, 835, 868, 1329
MfeI	CAATTG	2 cut(s)	960, 1098
MflI	RGATCY	1 cut(s)	1329
MhlI	GDGCHC	5 cut(s)	8, 331, 352, 535, 1324
MlyI	GAGTC	1 cut(s)	314
MmeI	TCCRAC	1 cut(s)	1403
Mph1103I	ATGCAT	1 cut(s)	1027
MroI	TCCGGA	1 cut(s)	1120
MroXI	GAANNNNTTC	2 cut(s)	317, 416
MseI	TTAA	5 cut(s)	87, 423, 1161, 1233, 1374
MslI	CAYNNNNRTG	1 cut(s)	500
MspA1I	CMGCKG	1 cut(s)	1306
MspI	CCGG	4 cut(s)	253, 569, 1115, 1121
MspR9I	CCNGG	1 cut(s)	1525
MunI	CAATTG	2 cut(s)	960, 1098
MvaI	CCWGG	1 cut(s)	1525
MvnI	CGCG	1 cut(s)	725
MwoI	GCNNNNNNNGC	3 cut(s)	574, 583, 1135
NdeII	GATC	5 cut(s)	193, 282, 835, 868, 1329
NlaIII	CATG	5 cut(s)	431, 505, 1029, 1201, 1570
NlaIV	GGNNCC	7 cut(s)	7, 38, 446, 980, 1119, 1356, 1454
NruI	TCGCGA	1 cut(s)	725
NsiI	ATGCAT	1 cut(s)	1027
NspI	RCATGY	1 cut(s)	1570
NspV	TTCGAA	1 cut(s)	813
PaeR7I	CTCGAG	1 cut(s)	1209
PciSI	GCTCTTC	1 cut(s)	810
PcsI	WCGNNNNNNNCGW	2 cut(s)	142, 810
PdmI	GAANNNNTTC	2 cut(s)	317, 416
PfeI	GAWTC	4 cut(s)	685, 760, 1240, 1309
PflMI	CCANNNNNTGG	1 cut(s)	674
PkrI	GCNGC	2 cut(s)	1285, 1305
PleI	GAGTC	1 cut(s)	313
PmaCI	CACGTG	1 cut(s)	146
PmlI	CACGTG	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	313
Ppu21I	YACGTR	1 cut(s)	146
PpuMI	RGGWCCY	1 cut(s)	244
PsiI	TTATAA	1 cut(s)	855
Psp5II	RGGWCCY	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	1523
PspCI	CACGTG	1 cut(s)	146
PspFI	CCCAGC	2 cut(s)	100, 1551
PspGI	CCWGG	1 cut(s)	1523
PspN4I	GGNNCC	7 cut(s)	7, 38, 446, 980, 1119, 1356, 1454
PspPI	GGNCC	6 cut(s)	244, 445, 571, 888, 1452, 1476
PspPPI	RGGWCCY	1 cut(s)	244
PstI	CTGCAG	1 cut(s)	124
PstNI	CAGNNNCTG	1 cut(s)	279
PsuI	RGATCY	1 cut(s)	1329
PvuII	CAGCTG	1 cut(s)	1306
RruI	TCGCGA	1 cut(s)	725
RsaI	GTAC	6 cut(s)	488, 494, 657, 1207, 1220, 1433
RsaNI	GTAC	6 cut(s)	487, 493, 656, 1206, 1219, 1432
RseI	CAYNNNNRTG	1 cut(s)	500
SapI	GCTCTTC	1 cut(s)	810
SaqAI	TTAA	5 cut(s)	87, 423, 1161, 1233, 1374
SatI	GCNGC	2 cut(s)	1284, 1304
Sau3AI	GATC	5 cut(s)	193, 282, 835, 868, 1329
Sau96I	GGNCC	6 cut(s)	244, 445, 571, 888, 1452, 1476
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	1 cut(s)	1525
SduI	GDGCHC	5 cut(s)	8, 331, 352, 535, 1324
SexAI	ACCWGGT	1 cut(s)	1523
SfaNI	GCATC	4 cut(s)	555, 946, 1012, 1177
SfcI	CTRYAG	1 cut(s)	120
Sfr274I	CTCGAG	1 cut(s)	1209
SfuI	TTCGAA	1 cut(s)	813
SinI	GGWCC	5 cut(s)	244, 445, 571, 1452, 1476
SlaI	CTCGAG	1 cut(s)	1209
SmiMI	CAYNNNNRTG	1 cut(s)	500
SmlI	CTYRAG	4 cut(s)	353, 386, 1209, 1313
SmoI	CTYRAG	4 cut(s)	353, 386, 1209, 1313
SsiI	CCGC	3 cut(s)	395, 649, 820
SspMI	CTAG	5 cut(s)	32, 81, 633, 764, 1046
StyD4I	CCNGG	1 cut(s)	1523
StyI	CCWWGG	3 cut(s)	31, 1333, 1402
TaaI	ACNGT	3 cut(s)	218, 297, 449
TaiI	ACGT	2 cut(s)	148, 1207
TaqI	TCGA	9 cut(s)	169, 240, 360, 367, 535, 813, 838, 921, 1210
TatI	WGTACW	2 cut(s)	492, 1218
TfiI	GAWTC	4 cut(s)	685, 760, 1240, 1309
Tru1I	TTAA	5 cut(s)	87, 423, 1161, 1233, 1374
Tru9I	TTAA	5 cut(s)	87, 423, 1161, 1233, 1374
TscAI	CASTG	6 cut(s)	61, 124, 205, 280, 302, 759
TseI	GCWGC	2 cut(s)	1283, 1303
TspDTI	ATGAA	6 cut(s)	409, 422, 572, 633, 722, 1002
TspGWI	ACGGA	1 cut(s)	212
TspRI	CASTG	6 cut(s)	61, 124, 205, 280, 302, 759
Van91I	CCANNNNNTGG	1 cut(s)	674
VneI	GTGCAC	1 cut(s)	1320
VpaK11BI	GGWCC	5 cut(s)	244, 445, 571, 1452, 1476
XagI	CCTNNNNNAGG	1 cut(s)	30
XapI	RAATTY	4 cut(s)	129, 165, 236, 809
XceI	RCATGY	1 cut(s)	1570
XhoI	CTCGAG	1 cut(s)	1209
XmaJI	CCTAGG	1 cut(s)	31
XmnI	GAANNNNTTC	2 cut(s)	317, 416
XspI	CTAG	5 cut(s)	32, 81, 633, 764, 1046
Zsp2I	ATGCAT	1 cut(s)	1027

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.