pycom06g09690

Crooked neck-like protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
14999333 .. 15002309
2977 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g09690.2

Sequence Viewer

Length: 1353 bp
ATGATGAGGAGGCTGAGCAGTTATTTGTGGCTTTCGCTGAATTCGAAGAACGGTGCAAAGAAACTGATCGATCGAGCAAGGTGTATTTATAAGTTTGCACTTGATCATATACCCAAAGGAAGGGCCGATGACTTATATAAGAAGTTTGTAGGTTTTGAGAAGCAGTATGGAGATAGGCAAGGGATTGAAGATGCAATTGTGGGAAAGAGGAGGTTTCAGTATGAAGATGAGGTTAGGAAGAACCCTCGTAATTATGATGCGTGGTTTGATTATATAAGGCTAGAAGAGAGTGCAGGGAATAAGGATAGAATTAGAGAAGTTTACGAGCGAGCAATTGCTAATGTTCCTCCGGCTCCAGAGAAGCGATATTGGCAACGATACATTTATTTATGGATTAACTATGCACTCTACGAGGAGCTTGATGCTGAAGACATGGAACGTACTCGAGATGTGTATAGGGAGTGCCTTAATTTGATTCCTCACCAGAAATTTTCGTTTGCAAAAATATGGCTTCTTGCTGCCCAGTTTGAGATACGGCAGCTAAATCTCAAGGGTGCACGACAGATCCTTGGCAATGCAATAGGAAAGGCACCCAAAGATAAGATATTTAAGAAGTATATTGAGATTGAGCTGAACCTTGGGAATATGGATCGATCTCGGAAGTTGTACGAAAAGTATCTGGAGTGGTCCCCAGAAAACTGTTATGCGTGGACCAAGTATGCAGAGTTAGAGCAATCTTTATGCGAGACGGAACGAACCAGGTCGCTTTTTGAACTTGCCATTGCCCAGCCATCACTTGACATGCCTGAGTTGTTGTGGAAGGCATTCATTGACTTTGAAATATCGGAGGGTGAATTTGAGAGAACTAGAGAACTTTACGAGAGACTCCTAGACCGGACAAAACACCTCAAGGTGTGGATCAGTTATGCGAAATTTGAGGCATCTGCTATGGTGCAAGATGGCGTGGATTCAGATATGTCCGAAGATCAAGCCCAGGATTATCTCCTTGAACAAAAGAAACAATGTCTTCTGCGTGCTCGAAGGGTTTTTGAGAAAGCTGTTAACTATTTTAGAACTTCAGCACCCGAGTTGAAGGAAGAAAGAGGTATGTTGCTGGAAGAATGGTTGAATATGGAGGCTAGCTTTGGAGACTTGGGTGACGTTAGCTTAGTCCAATCTAAGCTTCCAAAGAAACTGAAGAAGAGGAGGCCAATAATGACTGAAGACGGCCCTGCTGGGTATGAGGAGTACATTGATTACATGTTCCCAGAGGAAGCTCAGACGACAAATCTCAAGATATTGGAAGCTGCCTACAAGTGGAAGAGGCAAAAGGTGTCTTCCGATGAGGACTAG

Protein Analysis

451

Amino Acids

53.63

Weight (kDa)

6.49

Isoelectric Point (pI)

49.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 90
AccB1I GGYRCC 1 cut(s) 589
AclWI GGATC 3 cut(s) 559, 657, 926
AcsI RAATTY 4 cut(s) 40, 488, 854, 932
AcuI CTGAAG 4 cut(s) 447, 1062, 1217, 1242
AfaI GTAC 3 cut(s) 442, 668, 1250
AfiI CCNNNNNNNGG 2 cut(s) 120, 1317
AflIII ACRYGT 1 cut(s) 1260
AgsI TTSAA 6 cut(s) 188, 773, 839, 1010, 1093, 1129
AjnI CCWGG 2 cut(s) 758, 993
AjuI GAANNNNNNNTTGG 2 cut(s) 1167, 1199
AluBI AGCT 9 cut(s) 418, 541, 631, 1058, 1143, 1167, 1183, 1277, 1307
AluI AGCT 9 cut(s) 418, 541, 631, 1058, 1143, 1167, 1183, 1277, 1307
Alw21I GWGCWC 2 cut(s) 559, 1039
Alw26I GTCTC 3 cut(s) 740, 877, 1143
Alw44I GTGCAC 1 cut(s) 555
AlwI GGATC 3 cut(s) 559, 657, 926
Ama87I CYCGRG 2 cut(s) 444, 1085
AoxI GGCC 3 cut(s) 123, 1208, 1228
ApaLI GTGCAC 1 cut(s) 555
ApeKI GCWGC 3 cut(s) 518, 538, 1307
ApoI RAATTY 4 cut(s) 40, 488, 854, 932
Asp700I GAANNNNTTC 1 cut(s) 824
AspS9I GGNCC 4 cut(s) 123, 687, 711, 1229
AsuHPI GGTGA 3 cut(s) 473, 863, 1169
AsuII TTCGAA 1 cut(s) 44
AsuNHI GCTAGC 1 cut(s) 1139
AvaI CYCGRG 2 cut(s) 444, 1085
AvaII GGWCC 2 cut(s) 687, 711
BaeGI GKGCMC 1 cut(s) 559
BanI GGYRCC 1 cut(s) 589
BbsI GAAGAC 4 cut(s) 435, 1019, 1230, 1329
Bbv12I GWGCWC 2 cut(s) 559, 1039
BbvI GCAGC 3 cut(s) 505, 550, 1294
BccI CCATC 2 cut(s) 799, 953
BceAI ACGGC 2 cut(s) 551, 1243
BciT130I CCWGG 2 cut(s) 760, 995
BclI TGATCA 1 cut(s) 103
BcoDI GTCTC 3 cut(s) 740, 877, 1143
BfaI CTAG 5 cut(s) 281, 867, 890, 1140, 1351
BisI GCNGC 3 cut(s) 519, 539, 1308
BlpI GCTNAGC 1 cut(s) 14
BlsI GCNGC 3 cut(s) 520, 540, 1309
Bme1390I CCNGG 2 cut(s) 760, 995
Bme18I GGWCC 2 cut(s) 687, 711
BmeT110I CYCGRG 2 cut(s) 444, 1085
BmgT120I GGNCC 4 cut(s) 123, 687, 711, 1229
BmiI GGNNCC 3 cut(s) 354, 591, 689
BmrFI CCNGG 2 cut(s) 760, 995
BmrI ACTGGG 1 cut(s) 517
BmsI GCATC 4 cut(s) 181, 247, 412, 950
BmtI GCTAGC 1 cut(s) 1143
BmuI ACTGGG 1 cut(s) 517
BpiI GAAGAC 4 cut(s) 435, 1019, 1230, 1329
BpmI CTGGAG 2 cut(s) 339, 701
Bpu1102I GCTNAGC 1 cut(s) 14
Bpu14I TTCGAA 1 cut(s) 44
BpuEI CTTGAG 3 cut(s) 533, 893, 1277
Bsa29I ATCGAT 2 cut(s) 69, 652
BsaJI CCNNGG 3 cut(s) 568, 637, 993
BsaWI WCCGGW 1 cut(s) 894
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 1317
Bse1I ACTGG 1 cut(s) 523
Bse3DI GCAATG 2 cut(s) 580, 780
BseBI CCWGG 2 cut(s) 760, 995
BseCI ATCGAT 2 cut(s) 69, 652
BseDI CCNNGG 3 cut(s) 568, 637, 993
BseLI CCNNNNNNNGG 2 cut(s) 120, 1317
BseMI GCAATG 2 cut(s) 580, 780
BseMII CTCAG 3 cut(s) 5, 798, 1292
BseNI ACTGG 1 cut(s) 523
BseRI GAGGAG 5 cut(s) 22, 223, 428, 1219, 1259
BseSI GKGCMC 1 cut(s) 559
BseXI GCAGC 3 cut(s) 505, 550, 1294
BseYI CCCAGC 2 cut(s) 786, 1235
BsgI GTGCAG 1 cut(s) 312
Bsh1285I CGRYCG 1 cut(s) 73
BshFI GGCC 3 cut(s) 125, 1210, 1230
BshNI GGYRCC 1 cut(s) 589
BshVI ATCGAT 2 cut(s) 69, 652
BsiEI CGRYCG 1 cut(s) 73
BsiHKAI GWGCWC 2 cut(s) 559, 1039
BsiHKCI CYCGRG 2 cut(s) 444, 1085
BsiSI CCGG 2 cut(s) 350, 895
BslFI GGGAC 1 cut(s) 673
BslI CCNNNNNNNGG 2 cut(s) 120, 1317
BsmAI GTCTC 3 cut(s) 740, 877, 1143
BsmBI CGTCTC 1 cut(s) 740
BsmFI GGGAC 1 cut(s) 673
BsmI GAATGC 1 cut(s) 824
BsnI GGCC 3 cut(s) 125, 1210, 1230
BsoBI CYCGRG 2 cut(s) 444, 1085
Bsp119I TTCGAA 1 cut(s) 44
Bsp1286I GDGCHC 2 cut(s) 559, 1039
Bsp143I GATC 8 cut(s) 66, 70, 103, 564, 649, 653, 918, 985
Bsp1720I GCTNAGC 1 cut(s) 14
BspANI GGCC 3 cut(s) 125, 1210, 1230
BspCNI CTCAG 3 cut(s) 6, 799, 1291
BspDI ATCGAT 2 cut(s) 69, 652
BspLI GGNNCC 3 cut(s) 354, 591, 689
BspOI GCTAGC 1 cut(s) 1143
BspPI GGATC 3 cut(s) 559, 657, 926
BspT104I TTCGAA 1 cut(s) 44
BspT107I GGYRCC 1 cut(s) 589
BsrDI GCAATG 2 cut(s) 580, 780
BsrI ACTGG 1 cut(s) 523
BssECI CCNNGG 3 cut(s) 568, 637, 993
BssMI GATC 8 cut(s) 66, 70, 103, 564, 649, 653, 918, 985
BssT1I CCWWGG 2 cut(s) 568, 637
Bst2UI CCWGG 2 cut(s) 760, 995
Bst4CI ACNGT 2 cut(s) 53, 701
Bst6I CTCTTC 3 cut(s) 279, 1196, 1316
BstBI TTCGAA 1 cut(s) 44
BstC8I GCNNGC 3 cut(s) 330, 1035, 1141
BstDEI CTNAG 5 cut(s) 14, 807, 1168, 1179, 1278
BstKTI GATC 8 cut(s) 69, 73, 106, 567, 652, 656, 921, 988
BstMAI GTCTC 3 cut(s) 740, 877, 1143
BstMBI GATC 8 cut(s) 66, 70, 103, 564, 649, 653, 918, 985
BstMCI CGRYCG 1 cut(s) 73
BstMWI GCNNNNNNNGC 1 cut(s) 370
BstNI CCWGG 2 cut(s) 760, 995
BstNSI RCATGY 2 cut(s) 805, 1264
BstSCI CCNGG 2 cut(s) 758, 993
BstSLI GKGCMC 1 cut(s) 559
BstV1I GCAGC 3 cut(s) 505, 550, 1294
BstV2I GAAGAC 4 cut(s) 435, 1019, 1230, 1329
BstX2I RGATCY 1 cut(s) 564
BstYI RGATCY 1 cut(s) 564
Bsu15I ATCGAT 2 cut(s) 69, 652
BsuRI GGCC 3 cut(s) 125, 1210, 1230
BsuTUI ATCGAT 2 cut(s) 69, 652
Cac8I GCNNGC 3 cut(s) 330, 1035, 1141
Cfr13I GGNCC 4 cut(s) 123, 687, 711, 1229
ClaI ATCGAT 2 cut(s) 69, 652
CsiI ACCWGGT 1 cut(s) 758
Csp6I GTAC 3 cut(s) 441, 667, 1249
CviAII CATG 3 cut(s) 433, 802, 1261
CviQI GTAC 3 cut(s) 441, 667, 1249
DdeI CTNAG 5 cut(s) 14, 807, 1168, 1179, 1278
DpnI GATC 8 cut(s) 68, 72, 105, 566, 651, 655, 920, 987
DpnII GATC 8 cut(s) 66, 70, 103, 564, 649, 653, 918, 985
Eam1104I CTCTTC 3 cut(s) 279, 1196, 1316
EarI CTCTTC 3 cut(s) 279, 1196, 1316
Eco130I CCWWGG 2 cut(s) 568, 637
Eco47I GGWCC 2 cut(s) 687, 711
Eco57I CTGAAG 4 cut(s) 447, 1062, 1217, 1242
Eco88I CYCGRG 2 cut(s) 444, 1085
EcoRI GAATTC 1 cut(s) 40
EcoRII CCWGG 2 cut(s) 758, 993
EcoT14I CCWWGG 2 cut(s) 568, 637
ErhI CCWWGG 2 cut(s) 568, 637
Esp3I CGTCTC 1 cut(s) 740
FaeI CATG 3 cut(s) 436, 805, 1264
FaqI GGGAC 1 cut(s) 673
FatI CATG 3 cut(s) 432, 801, 1260
FbaI TGATCA 1 cut(s) 103
Fnu4HI GCNGC 3 cut(s) 519, 539, 1308
Fsp4HI GCNGC 3 cut(s) 519, 539, 1308
FspBI CTAG 5 cut(s) 281, 867, 890, 1140, 1351
GluI GCNGC 3 cut(s) 519, 539, 1308
GsaI CCCAGC 2 cut(s) 790, 1239
GsuI CTGGAG 2 cut(s) 339, 701
HaeIII GGCC 3 cut(s) 125, 1210, 1230
HapII CCGG 2 cut(s) 350, 895
Hin1II CATG 3 cut(s) 436, 805, 1264
HincII GTYRAC 1 cut(s) 1063
HindII GTYRAC 1 cut(s) 1063
HindIII AAGCTT 1 cut(s) 1181
HinfI GANTC 3 cut(s) 475, 885, 968
HpaI GTTAAC 1 cut(s) 1063
HpaII CCGG 2 cut(s) 350, 895
HphI GGTGA 3 cut(s) 473, 863, 1169
Hpy166II GTNNAC 4 cut(s) 322, 557, 711, 1063
Hpy188I TCNGA 6 cut(s) 660, 847, 973, 982, 1281, 1342
Hpy188III TCNNGA 4 cut(s) 356, 446, 680, 1294
Hpy8I GTNNAC 4 cut(s) 322, 557, 711, 1063
HpyAV CCTTC 4 cut(s) 114, 814, 1035, 1087
HpyCH4III ACNGT 2 cut(s) 53, 701
HpyCH4IV ACGT 2 cut(s) 439, 1161
HpyF10VI GCNNNNNNNGC 1 cut(s) 370
HpyF3I CTNAG 5 cut(s) 14, 807, 1168, 1179, 1278
HpySE526I ACGT 2 cut(s) 439, 1161
Hsp92II CATG 3 cut(s) 436, 805, 1264
Ksp22I TGATCA 1 cut(s) 103
KspAI GTTAAC 1 cut(s) 1063
Kzo9I GATC 8 cut(s) 66, 70, 103, 564, 649, 653, 918, 985
LmnI GCTCC 2 cut(s) 358, 415
Lsp1109I GCAGC 3 cut(s) 505, 550, 1294
LweI GCATC 4 cut(s) 181, 247, 412, 950
MabI ACCWGGT 1 cut(s) 758
MaeI CTAG 5 cut(s) 281, 867, 890, 1140, 1351
MaeII ACGT 2 cut(s) 439, 1161
MaeIII GTNAC 1 cut(s) 1157
MalI GATC 8 cut(s) 68, 72, 105, 566, 651, 655, 920, 987
MboI GATC 8 cut(s) 66, 70, 103, 564, 649, 653, 918, 985
MfeI CAATTG 2 cut(s) 195, 333
MflI RGATCY 1 cut(s) 564
MhlI GDGCHC 2 cut(s) 559, 1039
MluCI AATT 9 cut(s) 40, 195, 250, 309, 333, 469, 488, 854, 932
MlyI GAGTC 1 cut(s) 879
MroXI GAANNNNTTC 1 cut(s) 824
MseI TTAA 4 cut(s) 396, 468, 609, 1062
MspI CCGG 2 cut(s) 350, 895
MspR9I CCNGG 2 cut(s) 760, 995
MunI CAATTG 2 cut(s) 195, 333
Mva1269I GAATGC 1 cut(s) 824
MvaI CCWGG 2 cut(s) 760, 995
MwoI GCNNNNNNNGC 1 cut(s) 370
NdeII GATC 8 cut(s) 66, 70, 103, 564, 649, 653, 918, 985
NheI GCTAGC 1 cut(s) 1139
NlaIII CATG 3 cut(s) 436, 805, 1264
NlaIV GGNNCC 3 cut(s) 354, 591, 689
NmuCI GTSAC 1 cut(s) 1157
NspI RCATGY 2 cut(s) 805, 1264
NspV TTCGAA 1 cut(s) 44
PaeR7I CTCGAG 1 cut(s) 444
PciI ACATGT 1 cut(s) 1260
PcsI WCGNNNNNNNCGW 1 cut(s) 41
PctI GAATGC 1 cut(s) 824
PdmI GAANNNNTTC 1 cut(s) 824
PfeI GAWTC 2 cut(s) 475, 968
PkrI GCNGC 3 cut(s) 520, 540, 1309
Ple19I CGATCG 1 cut(s) 73
PleI GAGTC 1 cut(s) 879
PpsI GAGTC 1 cut(s) 879
PscI ACATGT 1 cut(s) 1260
PsiI TTATAA 1 cut(s) 90
Psp6I CCWGG 2 cut(s) 758, 993
PspFI CCCAGC 2 cut(s) 786, 1235
PspGI CCWGG 2 cut(s) 758, 993
PspN4I GGNNCC 3 cut(s) 354, 591, 689
PspPI GGNCC 4 cut(s) 123, 687, 711, 1229
PsuI RGATCY 1 cut(s) 564
PvuI CGATCG 1 cut(s) 73
RsaI GTAC 3 cut(s) 442, 668, 1250
RsaNI GTAC 3 cut(s) 441, 667, 1249
SaqAI TTAA 4 cut(s) 396, 468, 609, 1062
SatI GCNGC 3 cut(s) 519, 539, 1308
Sau3AI GATC 8 cut(s) 66, 70, 103, 564, 649, 653, 918, 985
Sau96I GGNCC 4 cut(s) 123, 687, 711, 1229
SchI GAGTC 1 cut(s) 879
ScrFI CCNGG 2 cut(s) 760, 995
SduI GDGCHC 2 cut(s) 559, 1039
SexAI ACCWGGT 1 cut(s) 758
SfaNI GCATC 4 cut(s) 181, 247, 412, 950
Sfr274I CTCGAG 1 cut(s) 444
SfuI TTCGAA 1 cut(s) 44
SinI GGWCC 2 cut(s) 687, 711
SlaI CTCGAG 1 cut(s) 444
SmlI CTYRAG 4 cut(s) 444, 548, 908, 1292
SmoI CTYRAG 4 cut(s) 444, 548, 908, 1292
Sse9I AATT 9 cut(s) 40, 195, 250, 309, 333, 469, 488, 854, 932
SspMI CTAG 5 cut(s) 281, 867, 890, 1140, 1351
StyD4I CCNGG 2 cut(s) 758, 993
StyI CCWWGG 2 cut(s) 568, 637
TaaI ACNGT 2 cut(s) 53, 701
TaiI ACGT 2 cut(s) 442, 1164
TaqI TCGA 6 cut(s) 44, 69, 73, 445, 652, 1039
TasI AATT 9 cut(s) 40, 195, 250, 309, 333, 469, 488, 854, 932
TatI WGTACW 1 cut(s) 1248
TfiI GAWTC 2 cut(s) 475, 968
Tru1I TTAA 4 cut(s) 396, 468, 609, 1062
Tru9I TTAA 4 cut(s) 396, 468, 609, 1062
TseFI GTSAC 1 cut(s) 1157
TseI GCWGC 3 cut(s) 518, 538, 1307
Tsp45I GTSAC 1 cut(s) 1157
TspDTI ATGAA 2 cut(s) 237, 817
TspGWI ACGGA 1 cut(s) 764
VneI GTGCAC 1 cut(s) 555
VpaK11BI GGWCC 2 cut(s) 687, 711
XapI RAATTY 4 cut(s) 40, 488, 854, 932
XceI RCATGY 2 cut(s) 805, 1264
XhoI CTCGAG 1 cut(s) 444
XmnI GAANNNNTTC 1 cut(s) 824
XspI CTAG 5 cut(s) 281, 867, 890, 1140, 1351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.