Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020160.1

Orthogroup ID

OG0002910

Physical Location & Seq

Genomic Coordinates Reverse (-)

22229 .. 25933

Gene Structure 3705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020160.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

atgtttcatgtcaggattaattatgcactttacgaggaacttgatactggtgatgtggaacgtacacgagatgtctatagggagtgccttaaattgattcctcatgagaaattttcatttgcaaaaatatggcttcttgctgctcagtttgagatacggcagctaaatctcacgggtgcacgccagattcttggtactgcaataggcaaggcaccaaaagataagattttcaagaagtatattgagattgagctgcaacttgcaaatatagatcgttgtcggaagttatatgaaaagtatctagagtgggcaccacacaattgctatgcatggagcaagtatgcagagttagagaaatctttgggtgagacagaacgagcaagggccctttttgaactcgccatcagccaattagaacttgacatgcctgaattgttatggaaggcatacatcgactatgaactgtcagaatttgagtttgatagaaccagacaactttatgagagactcctagaccggacaaaacatctaaaggtgtggatcagttatgcaaaatttgaggcatccgctatggtggggggaaatgacgaggattcagatttggcagaagctccttctgaggatgatataattgaagagaagaaacaatgtattgagcgtgctagaagggtttttgagaaagctcttaactattttagaacttcagcacctgaattgaaggaagaaagaggtatgttgctagaagaatggtttaatatggagtctagctttggggatctgggtgatattagcctagttcaatctaagctgccaaagaaactgaagaagaggagggcaatagtaaccgaagacggtcctgcagggtacgaggaatacattgattacctgttcccagaagaaagtcagacgacgaatctcaagattttggaagctgcctacaagtggaagaagcaaaaagtttcttctgatgaagattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0000974 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0071007 GO:0071010 GO:0071011 GO:0071012 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

HAT Suf TPR_8

Protein Analysis

325

Amino Acids

38.34

Weight (kDa)

5.22

Isoelectric Point (pI)

46.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13210 AT5G41770 AT5G45990 AT5G45990
fragaria_vesca	FvH4_3g03250 FvH4_5g04070 FvH4_5g04070 FvH4_5g04070 FvH4_5g04070
malus_domestica	MD06G1102000.v1.1 MD14G1121300.v1.1
prunus_persica	Prupe.5G115100_v2.0.a1
pyrus_communis	pycom06g09690
rosa_chinensis	RchiOBHm_Chr5g0005001 RchiOBHm_Chr7g0195451
rosa_laevigata	RLG00000004120 RLG00000031279
rosa_multiflora	Rmu_co8413909.1_g000001 Rmu_sc0010714.1_g000003 Rmu_sc0016543.1_g000004 Rmu_sc0018163.1_g000001 Rmu_sc0020160.1_g000003
rosa_roxburghii	Rroxscaffold_3G00260470
rosa_rugosa	Rorug04G0415100 Rorug04G0460000 Rorug07G0023200
rosa_samantha	Rh5AG042700 Rh5BG042400 Rh5BG086900 Rh5BG087100 Rh5CG047200 Rh5DG042700 Rh7AG150800 Rh7BG152400 Rh7CG156000 Rh7DG151800
rosa_wichuraiana	Rw5G004150 Rw7G012870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	211, 310
AciI	CCGC	1 cut(s)	567
AclWI	GGATC	2 cut(s)	548, 783
AcsI	RAATTY	3 cut(s)	110, 470, 554
AcuI	CTGAAG	2 cut(s)	687, 842
AfaI	GTAC	3 cut(s)	64, 196, 866
AfiI	CCNNNNNNNGG	1 cut(s)	942
AgsI	TTSAA	5 cut(s)	232, 395, 635, 718, 800
AluBI	AGCT	7 cut(s)	163, 253, 611, 683, 768, 808, 932
AluI	AGCT	7 cut(s)	163, 253, 611, 683, 768, 808, 932
Alw21I	GWGCWC	1 cut(s)	181
Alw26I	GTCTC	2 cut(s)	362, 499
Alw44I	GTGCAC	1 cut(s)	177
AlwI	GGATC	2 cut(s)	548, 783
AlwNI	CAGNNNCTG	1 cut(s)	710
AoxI	GGCC	1 cut(s)	384
ApaI	GGGCCC	1 cut(s)	388
ApaLI	GTGCAC	1 cut(s)	177
ApeKI	GCWGC	5 cut(s)	140, 160, 253, 808, 932
ApoI	RAATTY	3 cut(s)	110, 470, 554
AseI	ATTAAT	1 cut(s)	18
AspS9I	GGNCC	3 cut(s)	384, 385, 854
AsuHPI	GGTGA	3 cut(s)	62, 377, 794
AvaII	GGWCC	1 cut(s)	854
BaeGI	GKGCMC	3 cut(s)	181, 313, 388
BanI	GGYRCC	2 cut(s)	211, 310
BanII	GRGCYC	1 cut(s)	388
BauI	CACGAG	1 cut(s)	66
BbsI	GAAGAC	1 cut(s)	855
Bbv12I	GWGCWC	1 cut(s)	181
BbvI	GCAGC	5 cut(s)	127, 172, 240, 795, 919
BccI	CCATC	1 cut(s)	410
BceAI	ACGGC	1 cut(s)	173
BcoDI	GTCTC	2 cut(s)	362, 499
BfaI	CTAG	6 cut(s)	302, 512, 663, 740, 765, 794
BfmI	CTRYAG	2 cut(s)	76, 858
BisI	GCNGC	5 cut(s)	141, 161, 254, 809, 933
BlsI	GCNGC	5 cut(s)	142, 162, 255, 810, 934
Bme18I	GGWCC	1 cut(s)	854
BmgT120I	GGNCC	3 cut(s)	384, 385, 854
BmiI	GGNNCC	3 cut(s)	213, 312, 386
BmsI	GCATC	1 cut(s)	572
BpiI	GAAGAC	1 cut(s)	855
BpuEI	CTTGAG	1 cut(s)	902
BsaWI	WCCGGW	1 cut(s)	516
Bsc4I	CCNNNNNNNGG	1 cut(s)	942
Bse1I	ACTGG	1 cut(s)	52
BseGI	GGATG	2 cut(s)	563, 628
BseLI	CCNNNNNNNGG	1 cut(s)	942
BseMII	CTCAG	2 cut(s)	158, 609
BseNI	ACTGG	1 cut(s)	52
BseRI	GAGGAG	1 cut(s)	844
BseSI	GKGCMC	3 cut(s)	181, 313, 388
BseXI	GCAGC	5 cut(s)	127, 172, 240, 795, 919
BshFI	GGCC	1 cut(s)	386
BshNI	GGYRCC	2 cut(s)	211, 310
BsiHKAI	GWGCWC	1 cut(s)	181
BsiSI	CCGG	1 cut(s)	517
BslI	CCNNNNNNNGG	1 cut(s)	942
BsmAI	GTCTC	2 cut(s)	362, 499
BsnI	GGCC	1 cut(s)	386
Bsp120I	GGGCCC	1 cut(s)	384
Bsp1286I	GDGCHC	3 cut(s)	181, 313, 388
Bsp143I	GATC	3 cut(s)	271, 540, 775
BspACI	CCGC	1 cut(s)	567
BspANI	GGCC	1 cut(s)	386
BspCNI	CTCAG	2 cut(s)	157, 610
BspHI	TCATGA	1 cut(s)	103
BspLI	GGNNCC	3 cut(s)	213, 312, 386
BspMAI	CTGCAG	1 cut(s)	862
BspPI	GGATC	2 cut(s)	548, 783
BspT107I	GGYRCC	2 cut(s)	211, 310
BsrI	ACTGG	1 cut(s)	52
BssMI	GATC	3 cut(s)	271, 540, 775
BssSI	CACGAG	1 cut(s)	66
Bst2BI	CACGAG	1 cut(s)	66
Bst4CI	ACNGT	2 cut(s)	465, 854
Bst6I	CTCTTC	2 cut(s)	630, 821
BstC8I	GCNNGC	2 cut(s)	181, 660
BstDEI	CTNAG	3 cut(s)	144, 618, 804
BstF5I	GGATG	2 cut(s)	563, 628
BstKTI	GATC	3 cut(s)	274, 543, 778
BstMAI	GTCTC	2 cut(s)	362, 499
BstMBI	GATC	3 cut(s)	271, 540, 775
BstNSI	RCATGY	1 cut(s)	427
BstSFI	CTRYAG	2 cut(s)	76, 858
BstSLI	GKGCMC	3 cut(s)	181, 313, 388
BstV1I	GCAGC	5 cut(s)	127, 172, 240, 795, 919
BstV2I	GAAGAC	1 cut(s)	855
BstX2I	RGATCY	1 cut(s)	775
BstXI	CCANNNNNNTGG	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	775
BsuRI	GGCC	1 cut(s)	386
BtsCI	GGATG	2 cut(s)	563, 628
Cac8I	GCNNGC	2 cut(s)	181, 660
CaiI	CAGNNNCTG	1 cut(s)	710
CciI	TCATGA	1 cut(s)	103
Cfr13I	GGNCC	3 cut(s)	384, 385, 854
Csp6I	GTAC	3 cut(s)	63, 195, 865
CviAII	CATG	4 cut(s)	8, 104, 330, 424
CviQI	GTAC	3 cut(s)	63, 195, 865
DdeI	CTNAG	3 cut(s)	144, 618, 804
DpnI	GATC	3 cut(s)	273, 542, 777
DpnII	GATC	3 cut(s)	271, 540, 775
Eam1104I	CTCTTC	2 cut(s)	630, 821
EarI	CTCTTC	2 cut(s)	630, 821
Eco24I	GRGCYC	1 cut(s)	388
Eco47I	GGWCC	1 cut(s)	854
Eco57I	CTGAAG	2 cut(s)	687, 842
EcoO109I	RGGNCCY	2 cut(s)	384, 385
EcoT22I	ATGCAT	1 cut(s)	331
EcoT38I	GRGCYC	1 cut(s)	388
FaeI	CATG	4 cut(s)	11, 107, 333, 427
FatI	CATG	4 cut(s)	7, 103, 329, 423
Fnu4HI	GCNGC	5 cut(s)	141, 161, 254, 809, 933
FokI	GGATG	2 cut(s)	550, 635
FriOI	GRGCYC	1 cut(s)	388
Fsp4HI	GCNGC	5 cut(s)	141, 161, 254, 809, 933
FspBI	CTAG	6 cut(s)	302, 512, 663, 740, 765, 794
GluI	GCNGC	5 cut(s)	141, 161, 254, 809, 933
HaeIII	GGCC	1 cut(s)	386
HapII	CCGG	1 cut(s)	517
Hin1II	CATG	4 cut(s)	11, 107, 333, 427
HinfI	GANTC	6 cut(s)	97, 187, 507, 593, 761, 913
HpaII	CCGG	1 cut(s)	517
HphI	GGTGA	3 cut(s)	62, 377, 794
Hpy166II	GTNNAC	2 cut(s)	65, 179
Hpy188I	TCNGA	6 cut(s)	282, 469, 598, 619, 906, 967
Hpy188III	TCNNGA	5 cut(s)	13, 104, 232, 302, 919
Hpy8I	GTNNAC	2 cut(s)	65, 179
Hpy99I	CGWCG	1 cut(s)	913
HpyAV	CCTTC	4 cut(s)	436, 624, 660, 712
HpyCH4III	ACNGT	2 cut(s)	465, 854
HpyCH4IV	ACGT	1 cut(s)	61
HpyF3I	CTNAG	3 cut(s)	144, 618, 804
HpySE526I	ACGT	1 cut(s)	61
Hsp92II	CATG	4 cut(s)	11, 107, 333, 427
Kzo9I	GATC	3 cut(s)	271, 540, 775
LmnI	GCTCC	2 cut(s)	333, 616
Lsp1109I	GCAGC	5 cut(s)	127, 172, 240, 795, 919
LweI	GCATC	1 cut(s)	572
MaeI	CTAG	6 cut(s)	302, 512, 663, 740, 765, 794
MaeII	ACGT	1 cut(s)	61
MaeIII	GTNAC	1 cut(s)	841
MalI	GATC	3 cut(s)	273, 542, 777
MboI	GATC	3 cut(s)	271, 540, 775
MfeI	CAATTG	1 cut(s)	319
MflI	RGATCY	1 cut(s)	775
MhlI	GDGCHC	3 cut(s)	181, 313, 388
MlyI	GAGTC	2 cut(s)	501, 770
MmeI	TCCRAC	1 cut(s)	260
MnlI	CCTC	9 cut(s)	28, 111, 553, 583, 613, 722, 822, 825, 862
Mph1103I	ATGCAT	1 cut(s)	331
MseI	TTAA	4 cut(s)	18, 90, 687, 753
MspI	CCGG	1 cut(s)	517
MunI	CAATTG	1 cut(s)	319
NdeII	GATC	3 cut(s)	271, 540, 775
NlaIII	CATG	4 cut(s)	11, 107, 333, 427
NlaIV	GGNNCC	3 cut(s)	213, 312, 386
NsiI	ATGCAT	1 cut(s)	331
NspI	RCATGY	1 cut(s)	427
PagI	TCATGA	1 cut(s)	103
PfeI	GAWTC	4 cut(s)	97, 187, 593, 913
PkrI	GCNGC	5 cut(s)	142, 162, 255, 810, 934
PleI	GAGTC	2 cut(s)	501, 769
PpsI	GAGTC	2 cut(s)	501, 769
PshBI	ATTAAT	1 cut(s)	18
PspN4I	GGNNCC	3 cut(s)	213, 312, 386
PspOMI	GGGCCC	1 cut(s)	384
PspPI	GGNCC	3 cut(s)	384, 385, 854
PstI	CTGCAG	1 cut(s)	862
PstNI	CAGNNNCTG	1 cut(s)	710
PsuI	RGATCY	1 cut(s)	775
RsaI	GTAC	3 cut(s)	64, 196, 866
RsaNI	GTAC	3 cut(s)	63, 195, 865
SaqAI	TTAA	4 cut(s)	18, 90, 687, 753
SatI	GCNGC	5 cut(s)	141, 161, 254, 809, 933
Sau3AI	GATC	3 cut(s)	271, 540, 775
Sau96I	GGNCC	3 cut(s)	384, 385, 854
SbfI	CCTGCAGG	1 cut(s)	862
SchI	GAGTC	2 cut(s)	501, 770
SdaI	CCTGCAGG	1 cut(s)	862
SduI	GDGCHC	3 cut(s)	181, 313, 388
SfaNI	GCATC	1 cut(s)	572
SfcI	CTRYAG	2 cut(s)	76, 858
SinI	GGWCC	1 cut(s)	854
SmlI	CTYRAG	1 cut(s)	917
SmoI	CTYRAG	1 cut(s)	917
Sse8387I	CCTGCAGG	1 cut(s)	862
SsiI	CCGC	1 cut(s)	567
SspMI	CTAG	6 cut(s)	302, 512, 663, 740, 765, 794
TaaI	ACNGT	2 cut(s)	465, 854
TaiI	ACGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	453
TfiI	GAWTC	4 cut(s)	97, 187, 593, 913
Tru1I	TTAA	4 cut(s)	18, 90, 687, 753
Tru9I	TTAA	4 cut(s)	18, 90, 687, 753
TseI	GCWGC	5 cut(s)	140, 160, 253, 808, 932
TspDTI	ATGAA	3 cut(s)	105, 306, 474
VneI	GTGCAC	1 cut(s)	177
VpaK11BI	GGWCC	1 cut(s)	854
VspI	ATTAAT	1 cut(s)	18
XapI	RAATTY	3 cut(s)	110, 470, 554
XbaI	TCTAGA	1 cut(s)	301
XceI	RCATGY	1 cut(s)	427
XspI	CTAG	6 cut(s)	302, 512, 663, 740, 765, 794
Zsp2I	ATGCAT	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.