Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002910

Physical Location & Seq

Genomic Coordinates Forward (+)

56361303 .. 56367244

Gene Structure 5942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004120

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2505 bp

ATGGCTAGATCGAAGAAGCCAGTTGATCGGCCTCACCCAAGTGCTTATGGGCTTGAAAATTCTTCAACCGCAACCTCACCTTCTTTAAAGATACTTTCGGTATCGGGCTCGGTATTAGTTGACACCCGGCCGTGCCCAGCCCTACAAATTGGTGAAGGGCCCGATCCATCCCATCTAATCTTTAGGGCCCAGAGTAGTCATGGTAGGATAAGGAAGTTTTCCAAGTGTTACGACGTCGTTGGGTGTAAGCGTCTCCACATAAGGCTTCGTTCTTCGTTTAAAGCCCCTTGTTTCCAATTTCAAAATAAACCTCGGAACAAGATTTCAAAGCCGTCGTGTCCGCCGCCGTCTTCTTCTTCTTCGTTCGTGCGAAAGTCGTTCGCAATGGGCTCTTACAAGGACGCTGACCCAGCCCTAGGGTACCTAACCCGAAAGGATACGGAGGTCAAGCTACCACGGCCGACTAGGGTTAAGAATAAGACACCAGCCCCTGTTCAGATTACCGCCGAGCAAATCCTCCGGGAGGCTCGTGAGCGGCAGGAGGCGGAAATCCGGCCTCCCAAGCAGAAAATCACTGATCCATCTGAGCTTGCGGATTATCGTCTGCGAAAACGAAAGGAATTTGAGGATTTAATTCGGAGAGTGCGGTGGAATGTGAGTGTTTGGATCAAGTATGCGCAGTGGGAGGAGTCCCAGAAGGACTTCAAGCGTGCACGGTCTGTTTGGGAGCGTGCCCTTGAGGTGGATTATCGGAATCATACGCTATGGCTCAAGTATGCGGAGGTGGAGATGAAGAACAAGTTCATAAATCATGCTAGGAATGTGTGGGACCGTGCTGTTCAACTCTTGCCGAGAGTGGACCAGCTCTGGTACAAGTACATTCACATGGAGGAGATGATTGGGAATGTGGCTGGTGCTCGGCAAATTTTCGAGAGGTGGATGACTTGGATGCCGGACCAGCAAGGCTGGCTATCCTTCATCAAATTTGAGCTTCGGTATAATGAAGTTGAGCGTGCTAGAGCGATTTTCGAGCGGTTTGTACAATGTCATCCGAAAGTTGCAGCTTGGATTCGGTTTGCCAAATTTGAGATGAAGAATGGTGATGTTGCGAGGGCGAGGAATGTGTATGAGAGGGCAGTGGAGAAGTTAGCTGATGATGAGGAGGCCGAGCAGCTGTTTGTGGCTTTCGCTGAATTTGAAGAGCGGTGCAAAGAGACCGAGCGAGCTCGGTGTATCTATAAATTTGCACTGGATCACATACCCAAAGGAAGAGCTGAGGACTTGTATAAGAAGTTTGTATCTTTTGAGAAGCAATATGGCGATAGAGAAGGGATTGAGGATGCCATTGTGGGAAAGAGGAGGTTTCAGTATGAGGATGAGGTTAGGAAGAATCCTCTTAATTACGACTCTTGGTTTGATTATATAAGGCTGGAAGAGAGTGCAGGGAATAAGGACAGAATCAGAGAGGTTTATGAGCGAGCTGTTGCTAATGTTCCTCCTGCTCCTGAGAAGCGGTATTGGCAGCGATATATTTATCTGTGGATTAATTATGCACTTTACGAGGAACTTGATACTGGAGATGTGGAACGTACACGAGATGTCTATAGGGAGTGCCTTAAATTGATTCCTCATGAGAAATTTTCATTTGCAAAAATATGGCTTCTTGCTGCTCAGTTTGAGATACGGCAGCTAAATCTCACGGGTGCGCGCCAGATTCTTGGTACTGCAATAGGCAAGGCACCAAAAGATAAGATTTTCAAGAAGTATATTGAGATTGAGCTGCAACTTGCAAATATAGATCGTTGTCGGAAGTTATATGAAAAGTATCTAGAGTGGGCACCACACAATTGCTATGCATGGAGCAAGTATGCAGAGTTAGAGAAATCTTTGGGGGAGACAGAACGAGCTAGGGCCCTTTTTGAACTCGCCATCAGCCAATTAGAACTTGACATGCCTGAATTGTTATGGAAGGCATACATCGACTTTGAACTGTCAGAATTTGAGTTTGATAGAACCAGACAACTTTATGAGAGACTCCTAGACCGGACAAAACATCTAAAGGTGTGGATCAGTTATGCAAAATTTGAGGCATCCGCTATGGTGGGGGAAAATGACGAGGATTCAGATTTGGCAGAAGCTCCTTCCGAGGATGATATAATTGAAGAGAAGAAACAATGTATTGAGCGTGCTAGAAGGGTTTTTGAGAAAGCTCTTAACTATTTTAGAACTTCAGCACCTGAATTGAAGGAAGAAAGAGGTATGTTGCTAGAAGAATGGTTTAATATGGAGGCTAGCTTTGAGGATCTGGGTGATATTAGCCTAGTTCAATCTAAGCTGCCAAAGAAACTGAAGAAGAGGAGGGCAATAGTAACCGAAGACGGTCCTGCAGGGTACGAGGAATACATTGATTACCTGTTCCCAGAAGAAAGTCAGACGACGAATCTCAAGATTTTGGAAGCTGCCTACAAGTGGAAGAAGCAAAAAGTTTCTTCTGATGAGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0000974 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0071007 GO:0071010 GO:0071011 GO:0071012 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

HAT Suf TPR_8

Protein Analysis

835

Amino Acids

98.65

Weight (kDa)

8.74

Isoelectric Point (pI)

48.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_PRP39_C	PF23241	204 - 319	8.5e-14	PRP39 C-terminal HAT repeat
HAT_PRP39_N	PF23240	205 - 315	1.4e-08	PRP39 N-terminal HAT repeat
HAT_Syf1_CNRKL1_N	PF23233	207 - 352	6.2e-18	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
Suf	PF05843	208 - 447	1.2e-11	Suppressor of forked protein (Suf)
HAT_Syf1_CNRKL1_C	PF23231	220 - 282	4.3e-08	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
HAT_Syf1_CNRKL1_C	PF23231	253 - 368	1.9e-10	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
HAT_PRP39_N	PF23240	302 - 432	6.4e-12	PRP39 N-terminal HAT repeat
HAT_PRP39_C	PF23241	321 - 422	7.1e-13	PRP39 C-terminal HAT repeat
HAT	PF02184	335 - 363	1.1e-11	HAT (Half-A-TPR) repeat
HAT_Syf1_CNRKL1_C	PF23231	369 - 449	1.5e-10	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
HAT_PRP39_N	PF23240	452 - 575	3.8e-07	PRP39 N-terminal HAT repeat
HAT_Syf1_CNRKL1_N	PF23233	455 - 614	1.5e-14	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_C	PF23241	468 - 577	3.2e-08	PRP39 C-terminal HAT repeat
HAT_Syf1_CNRKL1_C	PF23231	526 - 672	1.4e-12	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
HAT_Syf1_CNRKL1_N	PF23233	586 - 700	1.9e-07	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_N	PF23240	586 - 683	3.3e-11	PRP39 N-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13210 AT5G41770 AT5G45990 AT5G45990
fragaria_vesca	FvH4_3g03250 FvH4_5g04070 FvH4_5g04070 FvH4_5g04070 FvH4_5g04070
malus_domestica	MD06G1102000.v1.1 MD14G1121300.v1.1
prunus_persica	Prupe.5G115100_v2.0.a1
pyrus_communis	pycom06g09690
rosa_chinensis	RchiOBHm_Chr5g0005001 RchiOBHm_Chr7g0195451
rosa_laevigata	RLG00000004120 RLG00000031279
rosa_multiflora	Rmu_co8413909.1_g000001 Rmu_sc0010714.1_g000003 Rmu_sc0016543.1_g000004 Rmu_sc0018163.1_g000001 Rmu_sc0020160.1_g000003
rosa_roxburghii	Rroxscaffold_3G00260470
rosa_rugosa	Rorug04G0415100 Rorug04G0460000 Rorug07G0023200
rosa_samantha	Rh5AG042700 Rh5BG042400 Rh5BG086900 Rh5BG087100 Rh5CG047200 Rh5DG042700 Rh7AG150800 Rh7BG152400 Rh7CG156000 Rh7DG151800
rosa_wichuraiana	Rw5G004150 Rw7G012870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	237
Acc16I	TGCGCA	1 cut(s)	678
Acc65I	GGTACC	1 cut(s)	420
AccB1I	GGYRCC	3 cut(s)	420, 1738, 1837
AccBSI	CCGCTC	3 cut(s)	535, 1033, 1204
AccII	CGCG	1 cut(s)	1708
AclWI	GGATC	6 cut(s)	158, 572, 674, 1260, 2075, 2310
AcoI	YGGCCR	2 cut(s)	128, 458
AcuI	CTGAAG	2 cut(s)	2214, 2369
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	7 cut(s)	422, 872, 878, 1041, 1591, 1723, 2393
AfiI	CCNNNNNNNGG	4 cut(s)	416, 523, 742, 2469
AleI	CACNNNNGTG	1 cut(s)	39
Alw21I	GWGCWC	3 cut(s)	715, 919, 1228
Alw26I	GTCTC	4 cut(s)	257, 1208, 1889, 2026
Alw44I	GTGCAC	1 cut(s)	711
AlwI	GGATC	6 cut(s)	158, 572, 674, 1260, 2075, 2310
AlwNI	CAGNNNCTG	2 cut(s)	491, 2237
AoxI	GGCC	8 cut(s)	29, 128, 158, 186, 458, 554, 1164, 1911
ApaI	GGGCCC	3 cut(s)	162, 190, 1915
ApaLI	GTGCAC	1 cut(s)	711
ApeKI	GCWGC	8 cut(s)	1061, 1171, 1522, 1667, 1687, 1780, 2335, 2459
ArsI	GACNNNNNNTTYG	2 cut(s)	1397, 1429
AseI	ATTAAT	1 cut(s)	1545
Asp700I	GAANNNNTTC	2 cut(s)	701, 800
Asp718I	GGTACC	1 cut(s)	420
AspA2I	CCTAGG	1 cut(s)	415
AspLEI	GCGC	3 cut(s)	679, 1708, 1710
AsuC2I	CCSGG	2 cut(s)	127, 521
AsuHPI	GGTGA	5 cut(s)	26, 69, 164, 1112, 2321
AsuNHI	GCTAGC	1 cut(s)	2291
AvaII	GGWCC	4 cut(s)	829, 859, 955, 2381
AvrII	CCTAGG	1 cut(s)	415
BaeGI	GKGCMC	7 cut(s)	137, 162, 190, 715, 736, 1840, 1915
BaeI	ACNNNNGTAYC	2 cut(s)	429, 462
BanI	GGYRCC	3 cut(s)	420, 1738, 1837
BanII	GRGCYC	6 cut(s)	110, 162, 190, 392, 1228, 1915
BauI	CACGAG	2 cut(s)	528, 1593
BbsI	GAAGAC	2 cut(s)	342, 2382
Bbv12I	GWGCWC	3 cut(s)	715, 919, 1228
BbvCI	CCTCAGC	1 cut(s)	1275
BbvI	GCAGC	8 cut(s)	1073, 1183, 1534, 1654, 1699, 1767, 2322, 2446
BccI	CCATC	4 cut(s)	175, 180, 589, 1937
BceAI	ACGGC	5 cut(s)	115, 316, 331, 473, 1700
BciVI	GTATCC	1 cut(s)	430
BcnI	CCSGG	2 cut(s)	127, 521
BcoDI	GTCTC	4 cut(s)	257, 1208, 1889, 2026
BfmI	CTRYAG	2 cut(s)	1603, 2385
BfuI	GTATCC	1 cut(s)	430
BlnI	CCTAGG	1 cut(s)	415
Bme1390I	CCNGG	2 cut(s)	127, 521
Bme18I	GGWCC	4 cut(s)	829, 859, 955, 2381
BmiI	GGNNCC	7 cut(s)	160, 188, 422, 830, 1740, 1839, 1913
BmrFI	CCNGG	2 cut(s)	127, 521
BmsI	GCATC	3 cut(s)	939, 1330, 2099
BmtI	GCTAGC	1 cut(s)	2295
BpiI	GAAGAC	2 cut(s)	342, 2382
BpmI	CTGGAG	1 cut(s)	1596
Bpu10I	CCTNAGC	1 cut(s)	1275
BpuEI	CTTGAG	3 cut(s)	755, 758, 2429
BpuMI	CCSGG	2 cut(s)	127, 521
BsaHI	GRCGYC	1 cut(s)	234
BsaI	GGTCTC	1 cut(s)	1208
BsaJI	CCNNGG	4 cut(s)	311, 415, 455, 2145
BsaWI	WCCGGW	1 cut(s)	2043
Bsc4I	CCNNNNNNNGG	4 cut(s)	416, 523, 742, 2469
Bse1I	ACTGG	3 cut(s)	20, 1254, 1579
Bse3DI	GCAATG	1 cut(s)	390
BseDI	CCNNGG	4 cut(s)	311, 415, 455, 2145
BseGI	GGATG	8 cut(s)	167, 945, 954, 1048, 1345, 1381, 2090, 2155
BseLI	CCNNNNNNNGG	4 cut(s)	416, 523, 742, 2469
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	4 cut(s)	576, 1266, 1497, 1685
BseNI	ACTGG	3 cut(s)	20, 1254, 1579
BsePI	GCGCGC	1 cut(s)	1706
BseRI	GAGGAG	5 cut(s)	701, 905, 1175, 1372, 2371
BseSI	GKGCMC	7 cut(s)	137, 162, 190, 715, 736, 1840, 1915
BseX3I	CGGCCG	2 cut(s)	128, 458
BseXI	GCAGC	8 cut(s)	1073, 1183, 1534, 1654, 1699, 1767, 2322, 2446
BseYI	CCCAGC	2 cut(s)	136, 409
BsgI	GTGCAG	1 cut(s)	1461
Bsh1236I	CGCG	1 cut(s)	1708
Bsh1285I	CGRYCG	2 cut(s)	131, 461
BshFI	GGCC	8 cut(s)	31, 130, 160, 188, 460, 556, 1166, 1913
BshNI	GGYRCC	3 cut(s)	420, 1738, 1837
BsiEI	CGRYCG	2 cut(s)	131, 461
BsiHKAI	GWGCWC	3 cut(s)	715, 919, 1228
BsiSI	CCGG	5 cut(s)	127, 520, 553, 953, 2044
BslFI	GGGAC	2 cut(s)	676, 842
BslI	CCNNNNNNNGG	4 cut(s)	416, 523, 742, 2469
BsmAI	GTCTC	4 cut(s)	257, 1208, 1889, 2026
BsmBI	CGTCTC	1 cut(s)	257
BsmFI	GGGAC	2 cut(s)	676, 842
BsnI	GGCC	8 cut(s)	31, 130, 160, 188, 460, 556, 1166, 1913
Bso31I	GGTCTC	1 cut(s)	1208
Bsp120I	GGGCCC	3 cut(s)	158, 186, 1911
Bsp1407I	TGTACA	1 cut(s)	1039
Bsp143I	GATC	9 cut(s)	8, 25, 163, 577, 666, 1252, 1798, 2067, 2302
BspANI	GGCC	8 cut(s)	31, 130, 160, 188, 460, 556, 1166, 1913
BspCNI	CTCAG	4 cut(s)	577, 1267, 1498, 1684
BspFNI	CGCG	1 cut(s)	1708
BspHI	TCATGA	1 cut(s)	1630
BspLI	GGNNCC	7 cut(s)	160, 188, 422, 830, 1740, 1839, 1913
BspMAI	CTGCAG	1 cut(s)	2389
BspOI	GCTAGC	1 cut(s)	2295
BspPI	GGATC	6 cut(s)	158, 572, 674, 1260, 2075, 2310
BspQI	GCTCTTC	2 cut(s)	1194, 1264
BspT107I	GGYRCC	3 cut(s)	420, 1738, 1837
BspTNI	GGTCTC	1 cut(s)	1208
BsrBI	CCGCTC	3 cut(s)	535, 1033, 1204
BsrDI	GCAATG	1 cut(s)	390
BsrGI	TGTACA	1 cut(s)	1039
BsrI	ACTGG	3 cut(s)	20, 1254, 1579
BssECI	CCNNGG	4 cut(s)	311, 415, 455, 2145
BssHII	GCGCGC	1 cut(s)	1706
BssMI	GATC	9 cut(s)	8, 25, 163, 577, 666, 1252, 1798, 2067, 2302
BssNI	GRCGYC	1 cut(s)	234
BssSI	CACGAG	2 cut(s)	528, 1593
BssT1I	CCWWGG	1 cut(s)	415
Bst2BI	CACGAG	2 cut(s)	528, 1593
Bst4CI	ACNGT	4 cut(s)	717, 833, 1992, 2381
Bst6I	CTCTTC	5 cut(s)	1194, 1264, 1428, 2157, 2348
BstACI	GRCGYC	1 cut(s)	234
BstAUI	TGTACA	1 cut(s)	1039
BstDEI	CTNAG	5 cut(s)	585, 1275, 1506, 1671, 2331
BstDSI	CCRYGG	1 cut(s)	455
BstENI	CCTNNNNNAGG	1 cut(s)	521
BstF5I	GGATG	8 cut(s)	167, 945, 954, 1048, 1345, 1381, 2090, 2155
BstFNI	CGCG	1 cut(s)	1708
BstHHI	GCGC	3 cut(s)	679, 1708, 1710
BstKTI	GATC	9 cut(s)	11, 28, 166, 580, 669, 1255, 1801, 2070, 2305
BstMAI	GTCTC	4 cut(s)	257, 1208, 1889, 2026
BstMBI	GATC	9 cut(s)	8, 25, 163, 577, 666, 1252, 1798, 2067, 2302
BstMCI	CGRYCG	2 cut(s)	131, 461
BstMWI	GCNNNNNNNGC	6 cut(s)	410, 457, 562, 958, 967, 1519
BstNSI	RCATGY	1 cut(s)	1954
BstSCI	CCNGG	2 cut(s)	125, 519
BstSFI	CTRYAG	2 cut(s)	1603, 2385
BstSLI	GKGCMC	7 cut(s)	137, 162, 190, 715, 736, 1840, 1915
BstUI	CGCG	1 cut(s)	1708
BstV1I	GCAGC	8 cut(s)	1073, 1183, 1534, 1654, 1699, 1767, 2322, 2446
BstV2I	GAAGAC	2 cut(s)	342, 2382
BstX2I	RGATCY	1 cut(s)	2302
BstXI	CCANNNNNNTGG	1 cut(s)	1718
BstYI	RGATCY	1 cut(s)	2302
BstZI	CGGCCG	2 cut(s)	128, 458
BsuI	GTATCC	1 cut(s)	430
BsuRI	GGCC	8 cut(s)	31, 130, 160, 188, 460, 556, 1166, 1913
BtgI	CCRYGG	1 cut(s)	455
BtsCI	GGATG	8 cut(s)	167, 945, 954, 1048, 1345, 1381, 2090, 2155
BtsI	GCAGTG	2 cut(s)	686, 1143
BtsIMutI	CAGTG	4 cut(s)	573, 686, 1143, 1247
CaiI	CAGNNNCTG	2 cut(s)	491, 2237
CciI	TCATGA	1 cut(s)	1630
CfoI	GCGC	3 cut(s)	679, 1708, 1710
CseI	GACGC	2 cut(s)	239, 410
Csp6I	GTAC	7 cut(s)	421, 871, 877, 1040, 1590, 1722, 2392
CviAII	CATG	6 cut(s)	200, 812, 886, 1631, 1857, 1951
CviQI	GTAC	7 cut(s)	421, 871, 877, 1040, 1590, 1722, 2392
DdeI	CTNAG	5 cut(s)	585, 1275, 1506, 1671, 2331
DpnI	GATC	9 cut(s)	10, 27, 165, 579, 668, 1254, 1800, 2069, 2304
DpnII	GATC	9 cut(s)	8, 25, 163, 577, 666, 1252, 1798, 2067, 2302
DraI	TTTAAA	2 cut(s)	87, 280
EaeI	YGGCCR	2 cut(s)	128, 458
EagI	CGGCCG	2 cut(s)	128, 458
Eam1104I	CTCTTC	5 cut(s)	1194, 1264, 1428, 2157, 2348
EarI	CTCTTC	5 cut(s)	1194, 1264, 1428, 2157, 2348
EciI	GGCGGA	2 cut(s)	330, 560
Ecl136II	GAGCTC	1 cut(s)	1226
EclXI	CGGCCG	2 cut(s)	128, 458
Eco130I	CCWWGG	1 cut(s)	415
Eco24I	GRGCYC	6 cut(s)	110, 162, 190, 392, 1228, 1915
Eco31I	GGTCTC	1 cut(s)	1208
Eco47I	GGWCC	4 cut(s)	829, 859, 955, 2381
Eco52I	CGGCCG	2 cut(s)	128, 458
Eco53kI	GAGCTC	1 cut(s)	1226
Eco57I	CTGAAG	2 cut(s)	2214, 2369
EcoICRI	GAGCTC	1 cut(s)	1226
EcoNI	CCTNNNNNAGG	1 cut(s)	521
EcoO109I	RGGNCCY	4 cut(s)	158, 186, 1911, 1912
EcoT14I	CCWWGG	1 cut(s)	415
EcoT22I	ATGCAT	1 cut(s)	1858
EcoT38I	GRGCYC	6 cut(s)	110, 162, 190, 392, 1228, 1915
ErhI	CCWWGG	1 cut(s)	415
Esp3I	CGTCTC	1 cut(s)	257
FaeI	CATG	6 cut(s)	203, 815, 889, 1634, 1860, 1954
FaqI	GGGAC	2 cut(s)	676, 842
FatI	CATG	6 cut(s)	199, 811, 885, 1630, 1856, 1950
FokI	GGATG	8 cut(s)	154, 952, 961, 1035, 1352, 1388, 2077, 2162
FriOI	GRGCYC	6 cut(s)	110, 162, 190, 392, 1228, 1915
FspI	TGCGCA	1 cut(s)	678
GlaI	GCGC	3 cut(s)	678, 1707, 1709
GsaI	CCCAGC	2 cut(s)	140, 413
GsuI	CTGGAG	1 cut(s)	1596
HaeIII	GGCC	8 cut(s)	31, 130, 160, 188, 460, 556, 1166, 1913
HapII	CCGG	5 cut(s)	127, 520, 553, 953, 2044
HgaI	GACGC	2 cut(s)	239, 410
HhaI	GCGC	3 cut(s)	679, 1708, 1710
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	6 cut(s)	203, 815, 889, 1634, 1860, 1954
Hin6I	GCGC	3 cut(s)	677, 1706, 1708
HinP1I	GCGC	3 cut(s)	677, 1706, 1708
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HpaII	CCGG	5 cut(s)	127, 520, 553, 953, 2044
HphI	GGTGA	5 cut(s)	26, 69, 164, 1112, 2321
Hpy166II	GTNNAC	4 cut(s)	121, 713, 859, 1592
Hpy188III	TCNNGA	7 cut(s)	530, 931, 1505, 1631, 1759, 1829, 2446
Hpy8I	GTNNAC	4 cut(s)	121, 713, 859, 1592
Hpy99I	CGWCG	4 cut(s)	236, 239, 337, 2440
HpyAV	CCTTC	9 cut(s)	90, 149, 691, 985, 1322, 1963, 2151, 2187, 2239
HpyCH4III	ACNGT	4 cut(s)	717, 833, 1992, 2381
HpyCH4IV	ACGT	2 cut(s)	234, 1588
HpyF10VI	GCNNNNNNNGC	6 cut(s)	410, 457, 562, 958, 967, 1519
HpyF3I	CTNAG	5 cut(s)	585, 1275, 1506, 1671, 2331
HpySE526I	ACGT	2 cut(s)	234, 1588
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	6 cut(s)	203, 815, 889, 1634, 1860, 1954
HspAI	GCGC	3 cut(s)	677, 1706, 1708
KpnI	GGTACC	1 cut(s)	424
Kzo9I	GATC	9 cut(s)	8, 25, 163, 577, 666, 1252, 1798, 2067, 2302
LguI	GCTCTTC	2 cut(s)	1194, 1264
LmnI	GCTCC	4 cut(s)	727, 1507, 1860, 2143
Lsp1109I	GCAGC	8 cut(s)	1073, 1183, 1534, 1654, 1699, 1767, 2322, 2446
LweI	GCATC	3 cut(s)	939, 1330, 2099
MaeII	ACGT	2 cut(s)	234, 1588
MaeIII	GTNAC	2 cut(s)	227, 2368
MalI	GATC	9 cut(s)	10, 27, 165, 579, 668, 1254, 1800, 2069, 2304
MbiI	CCGCTC	3 cut(s)	535, 1033, 1204
MboI	GATC	9 cut(s)	8, 25, 163, 577, 666, 1252, 1798, 2067, 2302
MfeI	CAATTG	1 cut(s)	1846
MflI	RGATCY	1 cut(s)	2302
MlyI	GAGTC	3 cut(s)	698, 1400, 2028
MmeI	TCCRAC	1 cut(s)	1787
Mph1103I	ATGCAT	1 cut(s)	1858
MroXI	GAANNNNTTC	2 cut(s)	701, 800
MseI	TTAA	9 cut(s)	86, 279, 471, 632, 1398, 1545, 1617, 2214, 2280
MslI	CAYNNNNRTG	2 cut(s)	39, 884
MspA1I	CMGCKG	1 cut(s)	1174
MspI	CCGG	5 cut(s)	127, 520, 553, 953, 2044
MspR9I	CCNGG	2 cut(s)	127, 521
MunI	CAATTG	1 cut(s)	1846
MvnI	CGCG	1 cut(s)	1708
MwoI	GCNNNNNNNGC	6 cut(s)	410, 457, 562, 958, 967, 1519
NciI	CCSGG	2 cut(s)	127, 521
NdeII	GATC	9 cut(s)	8, 25, 163, 577, 666, 1252, 1798, 2067, 2302
NheI	GCTAGC	1 cut(s)	2291
NlaIII	CATG	6 cut(s)	203, 815, 889, 1634, 1860, 1954
NlaIV	GGNNCC	7 cut(s)	160, 188, 422, 830, 1740, 1839, 1913
NmeAIII	GCCGAG	4 cut(s)	532, 876, 898, 1192
NsbI	TGCGCA	1 cut(s)	678
NsiI	ATGCAT	1 cut(s)	1858
NspI	RCATGY	1 cut(s)	1954
OliI	CACNNNNGTG	1 cut(s)	39
PagI	TCATGA	1 cut(s)	1630
PauI	GCGCGC	1 cut(s)	1706
PciSI	GCTCTTC	2 cut(s)	1194, 1264
PdmI	GAANNNNTTC	2 cut(s)	701, 800
PfeI	GAWTC	8 cut(s)	754, 1069, 1390, 1458, 1624, 1714, 2120, 2440
PfoI	TCCNGGA	1 cut(s)	519
PleI	GAGTC	3 cut(s)	697, 1400, 2028
PpsI	GAGTC	3 cut(s)	697, 1400, 2028
PshBI	ATTAAT	1 cut(s)	1545
Psp124BI	GAGCTC	1 cut(s)	1228
PspFI	CCCAGC	2 cut(s)	136, 409
PspN4I	GGNNCC	7 cut(s)	160, 188, 422, 830, 1740, 1839, 1913
PspOMI	GGGCCC	3 cut(s)	158, 186, 1911
PstI	CTGCAG	1 cut(s)	2389
PstNI	CAGNNNCTG	2 cut(s)	491, 2237
PsuI	RGATCY	1 cut(s)	2302
PteI	GCGCGC	1 cut(s)	1706
PvuII	CAGCTG	1 cut(s)	1174
RsaI	GTAC	7 cut(s)	422, 872, 878, 1041, 1591, 1723, 2393
RsaNI	GTAC	7 cut(s)	421, 871, 877, 1040, 1590, 1722, 2392
RseI	CAYNNNNRTG	2 cut(s)	39, 884
SacI	GAGCTC	1 cut(s)	1228
SapI	GCTCTTC	2 cut(s)	1194, 1264
SaqAI	TTAA	9 cut(s)	86, 279, 471, 632, 1398, 1545, 1617, 2214, 2280
Sau3AI	GATC	9 cut(s)	8, 25, 163, 577, 666, 1252, 1798, 2067, 2302
SbfI	CCTGCAGG	1 cut(s)	2389
SchI	GAGTC	3 cut(s)	698, 1400, 2028
ScrFI	CCNGG	2 cut(s)	127, 521
SdaI	CCTGCAGG	1 cut(s)	2389
SfaNI	GCATC	3 cut(s)	939, 1330, 2099
SfcI	CTRYAG	2 cut(s)	1603, 2385
SinI	GGWCC	4 cut(s)	829, 859, 955, 2381
SmiMI	CAYNNNNRTG	2 cut(s)	39, 884
SmlI	CTYRAG	3 cut(s)	737, 770, 2444
SmoI	CTYRAG	3 cut(s)	737, 770, 2444
Sse8387I	CCTGCAGG	1 cut(s)	2389
SstI	GAGCTC	1 cut(s)	1228
StyD4I	CCNGG	2 cut(s)	125, 519
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	4 cut(s)	717, 833, 1992, 2381
TaiI	ACGT	2 cut(s)	237, 1591
TaqI	TCGA	4 cut(s)	11, 930, 1029, 1980
TaqII	GACCGA	1 cut(s)	1232
TatI	WGTACW	2 cut(s)	876, 1039
TauI	GCSGC	2 cut(s)	346, 538
TfiI	GAWTC	8 cut(s)	754, 1069, 1390, 1458, 1624, 1714, 2120, 2440
Tru1I	TTAA	9 cut(s)	86, 279, 471, 632, 1398, 1545, 1617, 2214, 2280
Tru9I	TTAA	9 cut(s)	86, 279, 471, 632, 1398, 1545, 1617, 2214, 2280
TscAI	CASTG	4 cut(s)	580, 686, 1143, 1254
TseI	GCWGC	8 cut(s)	1061, 1171, 1522, 1667, 1687, 1780, 2335, 2459
TspDTI	ATGAA	7 cut(s)	793, 806, 967, 1017, 1106, 1632, 1833
TspGWI	ACGGA	1 cut(s)	455
TspRI	CASTG	4 cut(s)	580, 686, 1143, 1254
VneI	GTGCAC	1 cut(s)	711
VpaK11BI	GGWCC	4 cut(s)	829, 859, 955, 2381
VspI	ATTAAT	1 cut(s)	1545
XagI	CCTNNNNNAGG	1 cut(s)	521
XbaI	TCTAGA	1 cut(s)	1828
XceI	RCATGY	1 cut(s)	1954
XcmI	CCANNNNNNNNNTGG	1 cut(s)	197
XmaJI	CCTAGG	1 cut(s)	415
XmnI	GAANNNNTTC	2 cut(s)	701, 800
ZraI	GACGTC	1 cut(s)	235
Zsp2I	ATGCAT	1 cut(s)	1858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.