Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002910

Physical Location & Seq

Genomic Coordinates Forward (+)

54880726 .. 54886604

Gene Structure 5879 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00260470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1857 bp

ATGGGCTCTTACAAGGACGCTGACCCAGCCCTAGGGTACCTAACCCGGAAGGATACGGAGGTCAAGCTACCACGGCCGACTAGGGTTAAGAATAAGACACCAGCCCCTGTTCAAATTACCGCCGAGCAAATCCTCCGGGAGGCTCGTGAGCGGCAGGAGGCGGAAATCCGGCCTCCCAAGCAGAAAATCACTGATCCATCTGAGCTTGCGGATTATCGTCTGCGAAAACGAAAGGAATTTGAGGATTTAATTCGGAGAGTGCGGTGGAATGTGAGTGTTTGGATCAAGTATGCGCAGTGGGAGGAGTCCCAGAAGGACTTCAAGCGTGCACGGTCTGTTTGGGAGCGTGCCCTTGAGGTGGATTATCGGAATCATACGCTATGGCTCAACTATTGCCTAGAGTTGACCAGCTCTGGGTACAAGTACATTCACATGGAGGAGATGATTGGGAATGTGGCTGGTGCTCGGCAAATTTTTGAGAGGTGGATGACTTGGATGCCGGACCAGCAAGGCTGGCTATCCTTCATCAAATTTGAGCTTCGGTATAATGAAGTTGAGCGTGCTAGAGCGATTTTCGAGCGGTTTGTACAATGTCATCCCAAAGTTGCAGCTTGGATTCGGTTTGCCAAATTTGAGATGAAGAATGGTGATGTTGCGAGGGCGAGGAATGTGTATGAGAGGGCAGTGGAGAAGTTAGCTGATGATGAGGAGGCCGAGCAGCTGTTTCAATATGGCGATAGAGAAGGGATTGAGGATGCCATTGTGGGAAAGAGGAGGTTTCAGTATGAGGATGAGGTTAGGAAGAATCCTCTTAATTACGACTCTTGGTTTGATTATATAAGGCTGGAAGAGAGTGCAGGGAATAAGGACAGAATCAGAGAGGTTTATGAGCGAGCTGTTGCTAATGTTCCTCCTGCTCCTGAGAAGCGGTATTGGCAGCGATATATTTATCTGTGGATTAATTATGCACTTTACGAGGAACTTGATACTGGAGATGTGGAACGTACACGAGATGTCTATAGCCAGAGCTACCCGCTGATGGGTACTCTGGGTACTGGTGACAGCACCAGATATTTGTCAGCAGCATACTTCAGCTTGTTGTTGTATGCGAAAGCGAGTGCTATGGAGTGCCTTAAATTGATTCCTCATGAGAAATTTTCGTTTGCAAAAATATGGCTTCTTGCTGCTCAGTTTGAGATACGGCAGCTAAATCTCACGGGTGCACGCCAGATTCTTGGTACTGCAATAGGCAAGGCACCAAAAGATAAGATTTTCAAGAAGTATATTGAGATTGAGCTGCAACTTGCAAATATAGATCGTTGTCGGAAGTTATATGAAAAGTATCTAGAGTGGGCACCACACAATTGCTATGCATGGAGCAAGCATACATCGACTTTGAACTGCATCCGCTATGGTGGGGGAAATGACGAGGATTCAGATTTGGCAGAAGCTCCTTCCGAGGTTGATATAATTGAAGAGAAGAAACAATGTATTGAGCGTGCTAGAAGGGTTTTTGAGAAAGCACTTAACTATTTTAGAACTTCAGCACCTGAATTGAAGGAAGAAAGAGGTATGTTGCTAGAAGAATGGTTTAATATGGAGGCTAGCTTTGAGGATCTGGGTGATATTAGCCTAGTTCAATCTAAGCTGCCAAAGAAACTGAAGAAGAGGAGGGCAATAGTAACCGAAGACGGTCCTGCAGGGTACGAGGAATACATTGATTACCTGTTCCCAGAAGAAAGTCAGACGACGAATCTCAAGATTTTGGGAAGCTGCCTACAAGTGCATGGGCAAAGTCTGGAACTTATGGCTCTACCATCTGGTCAACCAACCCCTGGACTTGAATGGCAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0000974 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0071007 GO:0071010 GO:0071011 GO:0071012 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

HAT Suf TPR_8

Protein Analysis

618

Amino Acids

72.74

Weight (kDa)

6.33

Isoelectric Point (pI)

49.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_Syf1_CNRKL1_N	PF23233	79 - 198	5.5e-10	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
Suf	PF05843	154 - 242	2e-06	Suppressor of forked protein (Suf)
HAT_PRP39_N	PF23240	168 - 232	8.7e-07	PRP39 N-terminal HAT repeat
HAT_PRP39_C	PF23241	170 - 237	4.8e-08	PRP39 C-terminal HAT repeat
HAT_Syf1_CNRKL1_C	PF23231	176 - 315	2.3e-09	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
HAT	PF02184	184 - 212	7.5e-12	HAT (Half-A-TPR) repeat
HAT_Syf1_CNRKL1_N	PF23233	260 - 323	1e-07	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13210 AT5G41770 AT5G45990 AT5G45990
fragaria_vesca	FvH4_3g03250 FvH4_5g04070 FvH4_5g04070 FvH4_5g04070 FvH4_5g04070
malus_domestica	MD06G1102000.v1.1 MD14G1121300.v1.1
prunus_persica	Prupe.5G115100_v2.0.a1
pyrus_communis	pycom06g09690
rosa_chinensis	RchiOBHm_Chr5g0005001 RchiOBHm_Chr7g0195451
rosa_laevigata	RLG00000004120 RLG00000031279
rosa_multiflora	Rmu_co8413909.1_g000001 Rmu_sc0010714.1_g000003 Rmu_sc0016543.1_g000004 Rmu_sc0018163.1_g000001 Rmu_sc0020160.1_g000003
rosa_roxburghii	Rroxscaffold_3G00260470
rosa_rugosa	Rorug04G0415100 Rorug04G0460000 Rorug07G0023200
rosa_samantha	Rh5AG042700 Rh5BG042400 Rh5BG086900 Rh5BG087100 Rh5CG047200 Rh5DG042700 Rh7AG150800 Rh7BG152400 Rh7CG156000 Rh7DG151800
rosa_wichuraiana	Rw5G004150 Rw7G012870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	294
Acc65I	GGTACC	1 cut(s)	36
AccB1I	GGYRCC	3 cut(s)	36, 1255, 1354
AccB7I	CCANNNNNTGG	1 cut(s)	1835
AccBSI	CCGCTC	2 cut(s)	151, 580
AciI	CCGC	9 cut(s)	120, 151, 161, 209, 262, 580, 928, 1034, 1408
AclWI	GGATC	3 cut(s)	188, 290, 1623
AcoI	YGGCCR	1 cut(s)	74
AcsI	RAATTY	5 cut(s)	236, 471, 530, 629, 1154
AcuI	CTGAAG	3 cut(s)	1075, 1527, 1682
AfaI	GTAC	9 cut(s)	38, 419, 425, 588, 1006, 1045, 1054, 1240, 1706
AfiI	CCNNNNNNNGG	7 cut(s)	32, 139, 358, 414, 1039, 1040, 1835
AgsI	TTSAA	9 cut(s)	113, 322, 728, 1276, 1399, 1475, 1558, 1640, 1844
AjnI	CCWGG	1 cut(s)	1834
Alw21I	GWGCWC	3 cut(s)	331, 466, 1225
Alw44I	GTGCAC	2 cut(s)	327, 1221
AlwI	GGATC	3 cut(s)	188, 290, 1623
AlwNI	CAGNNNCTG	2 cut(s)	107, 1550
AoxI	GGCC	3 cut(s)	74, 170, 711
ApaLI	GTGCAC	2 cut(s)	327, 1221
ApeKI	GCWGC	9 cut(s)	608, 718, 937, 1082, 1184, 1204, 1297, 1648, 1773
ApoI	RAATTY	5 cut(s)	236, 471, 530, 629, 1154
ArsI	GACNNNNNNTTYG	2 cut(s)	812, 844
AseI	ATTAAT	1 cut(s)	960
Asp700I	GAANNNNTTC	1 cut(s)	317
Asp718I	GGTACC	1 cut(s)	36
AspA2I	CCTAGG	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	295
AspS9I	GGNCC	2 cut(s)	502, 1694
AsuC2I	CCSGG	2 cut(s)	46, 137
AsuHPI	GGTGA	3 cut(s)	659, 1070, 1634
AsuNHI	GCTAGC	1 cut(s)	1604
AvaII	GGWCC	2 cut(s)	502, 1694
AvrII	CCTAGG	1 cut(s)	31
BaeGI	GKGCMC	4 cut(s)	331, 352, 1225, 1357
BaeI	ACNNNNGTAYC	2 cut(s)	45, 78
BanI	GGYRCC	3 cut(s)	36, 1255, 1354
BanII	GRGCYC	1 cut(s)	8
BauI	CACGAG	2 cut(s)	144, 1008
BbsI	GAAGAC	1 cut(s)	1695
Bbv12I	GWGCWC	3 cut(s)	331, 466, 1225
BbvI	GCAGC	9 cut(s)	620, 730, 949, 1094, 1171, 1216, 1284, 1635, 1760
BccI	CCATC	3 cut(s)	205, 1033, 1825
BceAI	ACGGC	2 cut(s)	89, 1217
BciT130I	CCWGG	1 cut(s)	1836
BciVI	GTATCC	1 cut(s)	46
BcnI	CCSGG	2 cut(s)	46, 137
BfaI	CTAG	9 cut(s)	32, 81, 398, 564, 1346, 1503, 1580, 1605, 1634
BfmI	CTRYAG	2 cut(s)	1018, 1698
BfuI	GTATCC	1 cut(s)	46
BlnI	CCTAGG	1 cut(s)	31
Bme1390I	CCNGG	3 cut(s)	46, 137, 1836
Bme18I	GGWCC	2 cut(s)	502, 1694
BmgT120I	GGNCC	2 cut(s)	502, 1694
BmiI	GGNNCC	3 cut(s)	38, 1257, 1356
BmrFI	CCNGG	3 cut(s)	46, 137, 1836
BmsI	GCATC	3 cut(s)	486, 745, 1413
BmtI	GCTAGC	1 cut(s)	1608
BpiI	GAAGAC	1 cut(s)	1695
BpmI	CTGGAG	1 cut(s)	1011
BpuEI	CTTGAG	2 cut(s)	374, 1742
BpuMI	CCSGG	2 cut(s)	46, 137
BsaJI	CCNNGG	4 cut(s)	31, 71, 1458, 1834
Bsc4I	CCNNNNNNNGG	7 cut(s)	32, 139, 358, 414, 1039, 1040, 1835
Bse1I	ACTGG	2 cut(s)	994, 1060
BseBI	CCWGG	1 cut(s)	1836
BseDI	CCNNGG	4 cut(s)	31, 71, 1458, 1834
BseGI	GGATG	6 cut(s)	492, 501, 595, 760, 796, 1404
BseLI	CCNNNNNNNGG	7 cut(s)	32, 139, 358, 414, 1039, 1040, 1835
BseMII	CTCAG	3 cut(s)	192, 912, 1202
BseNI	ACTGG	2 cut(s)	994, 1060
BseRI	GAGGAG	5 cut(s)	317, 452, 722, 787, 1684
BseSI	GKGCMC	4 cut(s)	331, 352, 1225, 1357
BseX3I	CGGCCG	1 cut(s)	74
BseXI	GCAGC	9 cut(s)	620, 730, 949, 1094, 1171, 1216, 1284, 1635, 1760
BseYI	CCCAGC	1 cut(s)	25
BsgI	GTGCAG	1 cut(s)	876
Bsh1285I	CGRYCG	1 cut(s)	77
BshFI	GGCC	3 cut(s)	76, 172, 713
BshNI	GGYRCC	3 cut(s)	36, 1255, 1354
BsiEI	CGRYCG	1 cut(s)	77
BsiHKAI	GWGCWC	3 cut(s)	331, 466, 1225
BsiSI	CCGG	4 cut(s)	46, 136, 169, 500
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	7 cut(s)	32, 139, 358, 414, 1039, 1040, 1835
BsmFI	GGGAC	1 cut(s)	292
BsnI	GGCC	3 cut(s)	76, 172, 713
Bsp1286I	GDGCHC	6 cut(s)	8, 331, 352, 466, 1225, 1357
Bsp1407I	TGTACA	1 cut(s)	586
Bsp143I	GATC	4 cut(s)	193, 282, 1315, 1615
BspACI	CCGC	9 cut(s)	120, 151, 161, 209, 262, 580, 928, 1034, 1408
BspANI	GGCC	3 cut(s)	76, 172, 713
BspCNI	CTCAG	3 cut(s)	193, 913, 1201
BspHI	TCATGA	1 cut(s)	1147
BspLI	GGNNCC	3 cut(s)	38, 1257, 1356
BspMAI	CTGCAG	1 cut(s)	1702
BspOI	GCTAGC	1 cut(s)	1608
BspPI	GGATC	3 cut(s)	188, 290, 1623
BspT107I	GGYRCC	3 cut(s)	36, 1255, 1354
BsrBI	CCGCTC	2 cut(s)	151, 580
BsrGI	TGTACA	1 cut(s)	586
BsrI	ACTGG	2 cut(s)	994, 1060
BssECI	CCNNGG	4 cut(s)	31, 71, 1458, 1834
BssMI	GATC	4 cut(s)	193, 282, 1315, 1615
BssSI	CACGAG	2 cut(s)	144, 1008
BssT1I	CCWWGG	1 cut(s)	31
Bst2BI	CACGAG	2 cut(s)	144, 1008
Bst2UI	CCWGG	1 cut(s)	1836
Bst4CI	ACNGT	2 cut(s)	333, 1694
Bst6I	CTCTTC	3 cut(s)	843, 1470, 1661
BstAUI	TGTACA	1 cut(s)	586
BstDEI	CTNAG	4 cut(s)	201, 921, 1188, 1644
BstDSI	CCRYGG	1 cut(s)	71
BstENI	CCTNNNNNAGG	1 cut(s)	137
BstF5I	GGATG	6 cut(s)	492, 501, 595, 760, 796, 1404
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	4 cut(s)	196, 285, 1318, 1618
BstMBI	GATC	4 cut(s)	193, 282, 1315, 1615
BstMCI	CGRYCG	1 cut(s)	77
BstMWI	GCNNNNNNNGC	6 cut(s)	26, 73, 178, 505, 514, 934
BstNI	CCWGG	1 cut(s)	1836
BstSCI	CCNGG	3 cut(s)	44, 135, 1834
BstSFI	CTRYAG	2 cut(s)	1018, 1698
BstSLI	GKGCMC	4 cut(s)	331, 352, 1225, 1357
BstV1I	GCAGC	9 cut(s)	620, 730, 949, 1094, 1171, 1216, 1284, 1635, 1760
BstV2I	GAAGAC	1 cut(s)	1695
BstX2I	RGATCY	1 cut(s)	1615
BstXI	CCANNNNNNTGG	1 cut(s)	1235
BstYI	RGATCY	1 cut(s)	1615
BstZI	CGGCCG	1 cut(s)	74
BsuI	GTATCC	1 cut(s)	46
BsuRI	GGCC	3 cut(s)	76, 172, 713
BtgI	CCRYGG	1 cut(s)	71
BtsCI	GGATG	6 cut(s)	492, 501, 595, 760, 796, 1404
BtsI	GCAGTG	2 cut(s)	302, 690
BtsIMutI	CAGTG	3 cut(s)	189, 302, 690
CaiI	CAGNNNCTG	2 cut(s)	107, 1550
CciI	TCATGA	1 cut(s)	1147
CfoI	GCGC	1 cut(s)	295
Cfr13I	GGNCC	2 cut(s)	502, 1694
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	9 cut(s)	37, 418, 424, 587, 1005, 1044, 1053, 1239, 1705
CviAII	CATG	4 cut(s)	433, 1148, 1374, 1787
CviQI	GTAC	9 cut(s)	37, 418, 424, 587, 1005, 1044, 1053, 1239, 1705
DdeI	CTNAG	4 cut(s)	201, 921, 1188, 1644
DpnI	GATC	4 cut(s)	195, 284, 1317, 1617
DpnII	GATC	4 cut(s)	193, 282, 1315, 1615
EaeI	YGGCCR	1 cut(s)	74
EagI	CGGCCG	1 cut(s)	74
Eam1104I	CTCTTC	3 cut(s)	843, 1470, 1661
EarI	CTCTTC	3 cut(s)	843, 1470, 1661
EciI	GGCGGA	1 cut(s)	176
EclXI	CGGCCG	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	2 cut(s)	502, 1694
Eco52I	CGGCCG	1 cut(s)	74
Eco57I	CTGAAG	3 cut(s)	1075, 1527, 1682
EcoNI	CCTNNNNNAGG	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	1834
EcoT14I	CCWWGG	1 cut(s)	31
EcoT22I	ATGCAT	1 cut(s)	1375
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	4 cut(s)	436, 1151, 1377, 1790
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	4 cut(s)	432, 1147, 1373, 1786
FauI	CCCGC	1 cut(s)	1041
FokI	GGATG	6 cut(s)	499, 508, 582, 767, 803, 1391
FriOI	GRGCYC	1 cut(s)	8
FspBI	CTAG	9 cut(s)	32, 81, 398, 564, 1346, 1503, 1580, 1605, 1634
FspI	TGCGCA	1 cut(s)	294
GlaI	GCGC	1 cut(s)	294
GsaI	CCCAGC	1 cut(s)	29
GsuI	CTGGAG	1 cut(s)	1011
HaeIII	GGCC	3 cut(s)	76, 172, 713
HapII	CCGG	4 cut(s)	46, 136, 169, 500
HgaI	GACGC	1 cut(s)	26
HhaI	GCGC	1 cut(s)	295
Hin1II	CATG	4 cut(s)	436, 1151, 1377, 1790
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HincII	GTYRAC	2 cut(s)	405, 1826
HindII	GTYRAC	2 cut(s)	405, 1826
HpaII	CCGG	4 cut(s)	46, 136, 169, 500
HphI	GGTGA	3 cut(s)	659, 1070, 1634
Hpy166II	GTNNAC	5 cut(s)	329, 405, 1007, 1223, 1826
Hpy188I	TCNGA	8 cut(s)	202, 255, 369, 878, 1326, 1438, 1459, 1746
Hpy188III	TCNNGA	7 cut(s)	146, 920, 1148, 1276, 1346, 1759, 1799
Hpy8I	GTNNAC	5 cut(s)	329, 405, 1007, 1223, 1826
Hpy99I	CGWCG	1 cut(s)	1753
HpyAV	CCTTC	7 cut(s)	43, 307, 532, 737, 1464, 1500, 1552
HpyCH4III	ACNGT	2 cut(s)	333, 1694
HpyCH4IV	ACGT	1 cut(s)	1003
HpyF10VI	GCNNNNNNNGC	6 cut(s)	26, 73, 178, 505, 514, 934
HpyF3I	CTNAG	4 cut(s)	201, 921, 1188, 1644
HpySE526I	ACGT	1 cut(s)	1003
Hsp92II	CATG	4 cut(s)	436, 1151, 1377, 1790
HspAI	GCGC	1 cut(s)	293
KpnI	GGTACC	1 cut(s)	40
Kzo9I	GATC	4 cut(s)	193, 282, 1315, 1615
LmnI	GCTCC	4 cut(s)	343, 922, 1377, 1456
Lsp1109I	GCAGC	9 cut(s)	620, 730, 949, 1094, 1171, 1216, 1284, 1635, 1760
LweI	GCATC	3 cut(s)	486, 745, 1413
MaeI	CTAG	9 cut(s)	32, 81, 398, 564, 1346, 1503, 1580, 1605, 1634
MaeII	ACGT	1 cut(s)	1003
MaeIII	GTNAC	2 cut(s)	1058, 1681
MalI	GATC	4 cut(s)	195, 284, 1317, 1617
MbiI	CCGCTC	2 cut(s)	151, 580
MboI	GATC	4 cut(s)	193, 282, 1315, 1615
MfeI	CAATTG	1 cut(s)	1363
MflI	RGATCY	1 cut(s)	1615
MhlI	GDGCHC	6 cut(s)	8, 331, 352, 466, 1225, 1357
MlyI	GAGTC	2 cut(s)	314, 815
MmeI	TCCRAC	1 cut(s)	1304
Mph1103I	ATGCAT	1 cut(s)	1375
MroXI	GAANNNNTTC	1 cut(s)	317
MseI	TTAA	8 cut(s)	87, 248, 813, 960, 1134, 1527, 1593, 1855
MslI	CAYNNNNRTG	1 cut(s)	431
MspA1I	CMGCKG	2 cut(s)	721, 1036
MspI	CCGG	4 cut(s)	46, 136, 169, 500
MspR9I	CCNGG	3 cut(s)	46, 137, 1836
MunI	CAATTG	1 cut(s)	1363
MvaI	CCWGG	1 cut(s)	1836
MwoI	GCNNNNNNNGC	6 cut(s)	26, 73, 178, 505, 514, 934
NciI	CCSGG	2 cut(s)	46, 137
NdeII	GATC	4 cut(s)	193, 282, 1315, 1615
NheI	GCTAGC	1 cut(s)	1604
NlaIII	CATG	4 cut(s)	436, 1151, 1377, 1790
NlaIV	GGNNCC	3 cut(s)	38, 1257, 1356
NmeAIII	GCCGAG	3 cut(s)	148, 445, 739
NmuCI	GTSAC	1 cut(s)	1058
NsbI	TGCGCA	1 cut(s)	294
NsiI	ATGCAT	1 cut(s)	1375
PagI	TCATGA	1 cut(s)	1147
PdmI	GAANNNNTTC	1 cut(s)	317
PfeI	GAWTC	8 cut(s)	370, 616, 805, 873, 1141, 1231, 1433, 1753
PflMI	CCANNNNNTGG	1 cut(s)	1835
PfoI	TCCNGGA	1 cut(s)	135
PleI	GAGTC	2 cut(s)	313, 815
PpsI	GAGTC	2 cut(s)	313, 815
PshBI	ATTAAT	1 cut(s)	960
Psp6I	CCWGG	1 cut(s)	1834
PspFI	CCCAGC	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	1834
PspN4I	GGNNCC	3 cut(s)	38, 1257, 1356
PspPI	GGNCC	2 cut(s)	502, 1694
PstI	CTGCAG	1 cut(s)	1702
PstNI	CAGNNNCTG	2 cut(s)	107, 1550
PsuI	RGATCY	1 cut(s)	1615
PvuII	CAGCTG	1 cut(s)	721
RsaI	GTAC	9 cut(s)	38, 419, 425, 588, 1006, 1045, 1054, 1240, 1706
RsaNI	GTAC	9 cut(s)	37, 418, 424, 587, 1005, 1044, 1053, 1239, 1705
RseI	CAYNNNNRTG	1 cut(s)	431
SaqAI	TTAA	8 cut(s)	87, 248, 813, 960, 1134, 1527, 1593, 1855
Sau3AI	GATC	4 cut(s)	193, 282, 1315, 1615
Sau96I	GGNCC	2 cut(s)	502, 1694
SbfI	CCTGCAGG	1 cut(s)	1702
SchI	GAGTC	2 cut(s)	314, 815
ScrFI	CCNGG	3 cut(s)	46, 137, 1836
SdaI	CCTGCAGG	1 cut(s)	1702
SduI	GDGCHC	6 cut(s)	8, 331, 352, 466, 1225, 1357
SfaNI	GCATC	3 cut(s)	486, 745, 1413
SfcI	CTRYAG	2 cut(s)	1018, 1698
SinI	GGWCC	2 cut(s)	502, 1694
SmiMI	CAYNNNNRTG	1 cut(s)	431
SmlI	CTYRAG	2 cut(s)	353, 1757
SmoI	CTYRAG	2 cut(s)	353, 1757
Sse8387I	CCTGCAGG	1 cut(s)	1702
SsiI	CCGC	9 cut(s)	120, 151, 161, 209, 262, 580, 928, 1034, 1408
SspMI	CTAG	9 cut(s)	32, 81, 398, 564, 1346, 1503, 1580, 1605, 1634
StyD4I	CCNGG	3 cut(s)	44, 135, 1834
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	2 cut(s)	333, 1694
TaiI	ACGT	1 cut(s)	1006
TaqI	TCGA	2 cut(s)	576, 1391
TatI	WGTACW	2 cut(s)	423, 586
TauI	GCSGC	1 cut(s)	154
TfiI	GAWTC	8 cut(s)	370, 616, 805, 873, 1141, 1231, 1433, 1753
Tru1I	TTAA	8 cut(s)	87, 248, 813, 960, 1134, 1527, 1593, 1855
Tru9I	TTAA	8 cut(s)	87, 248, 813, 960, 1134, 1527, 1593, 1855
TscAI	CASTG	3 cut(s)	196, 302, 690
TseFI	GTSAC	1 cut(s)	1058
TseI	GCWGC	9 cut(s)	608, 718, 937, 1082, 1184, 1204, 1297, 1648, 1773
Tsp45I	GTSAC	1 cut(s)	1058
TspDTI	ATGAA	4 cut(s)	514, 564, 653, 1350
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	3 cut(s)	196, 302, 690
Van91I	CCANNNNNTGG	1 cut(s)	1835
VneI	GTGCAC	2 cut(s)	327, 1221
VpaK11BI	GGWCC	2 cut(s)	502, 1694
VspI	ATTAAT	1 cut(s)	960
XagI	CCTNNNNNAGG	1 cut(s)	137
XapI	RAATTY	5 cut(s)	236, 471, 530, 629, 1154
XbaI	TCTAGA	1 cut(s)	1345
XmaJI	CCTAGG	1 cut(s)	31
XmnI	GAANNNNTTC	1 cut(s)	317
XspI	CTAG	9 cut(s)	32, 81, 398, 564, 1346, 1503, 1580, 1605, 1634
Zsp2I	ATGCAT	1 cut(s)	1375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.