Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004898

Physical Location & Seq

Genomic Coordinates Reverse (-)

4565370 .. 4571355

Gene Structure 5986 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G13870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2409 bp

ATGGATGCCGCTTGCTCTACCCAGCTTATCGATGGGGATGGTGTCTTTAATGTTTCTGGGGTTGATCATTTCATCAAGGAGGTTAAATTGGACGAATGTGGTCTTTCATACGCGGTTGTCTCGATTATGGGTCCACAAAGTAGTGGGAAGAGTACGCTCTTGAATCATTTGTTTGGAACCAACTTTAGAGAAATGGATGCATTTAGAGGAAGGTCTCAGACGACTAAGGGAATTTGGATTGCTAGATGCGCTGGTATTGAGCCTTGCACCGTTGTGATGGATTTAGAGGGTACCGATGGGAGAGAGCGTGGTGAGGATGATACTGCTTTCGAGAAACAGAGTGCTCTTTTTGCACTTGCAGTCTCAGACATAGTTCTTATAAACATGTGGTGTCATGATATTGGTCGGGAACAAGCAGCAAATAAACCTCTTTTAAAGACTGTGTTCCAGGTTATGATGCGGTTGTTTAGTCCGCGGAAGACAACTTTGATGTTTGTTATAAGAGATAAAACACGGACGCCACTGGAAAATTTAGAACCAGTGCTGAGGGAAGACATTCAAAAGATATGGGATTCAGTTCCCAAGCCTCAGGCCCACAAAGAAACTCCACTTAGCGATTTCTTCAATGTTGAAGTAGTTGCTCTCTCGAGTTATGAAGAAAAAGAAGAGCAATTCAAAGAGCAGGTCTACAATTTGAGACAACGGTTCTTCCAATCTGTCGCACCTGGCGGGCTTGCTGGTGATCGACGAGGAGTTGTCCCTGCCAATGCTTTTGCTTTTAGTGCAAAACAGATGTGGCAAGTCATCAAAGACAACAAAGACTTGGATCTTCCAGCACACAAGGTCATGGTAGCAACTGTGCGATGTGAGGAAATTGCCAATGAAAAATTCTCTAGTTTTATCGCGAATGAGAATTGGCGCGAGTTGGAAGAGGCTGTACAGTCTGGTCCTGTTTCCGGATTTGGAAGAAAGCTGAGCTCAATTCTCCAAGCAAGCTTATCAGAGTATGACACAGAAGCGACATACTTTGAAGAAAGTGTTAGATCATCCAAGAGGCAACAGCTGCAAGAAAAGTTATTGCAACTTGTTCAACCAACTTTCCAAGACGTGCTTGGACATTTGAGGGCTGGAGCACTTGAAAACTTCAAGAATGCTTTTGAGAAGGCCTTGGATGCTGGAGAAGGGTTTTCATCATCTGCGAAATCCTGCGCTCAGTCATGCATATCTAAGTTTGATAAAGGATGTGAAGAGGCTGTTATTGAACAAGCAAAATGGGATACATCTAAAACTCGGGAAAAGCTTGAGCGTGATATTGAAGCTCATATCTCTTCTGTCCGTACTGCAAAGTTGGCTGAACTGACTACTCTGTATGAGTCAAAACTAAATGTAGCCTTATCTGGACCGGTGGAAGCTCTTCTGGATGGGGCTAATGATGAAACATGGCCAGCAATAAGAAAGCTACTTAGACGGGAAGGAGAATTGGCTGTCTATGGTCTCTCCAACGCATTATCTGGTTTCGAAATGGACGAAGAAACACGGAGTAAAATGCTTGCTGATCTCGAGAACTATGCACGAGGTATTGTTGAAACCAAGGCAAAGGAAGAGGCTGGAAGAGCGATGATGCGCATGAAGGATAGATTTGCTACAATCTTCAGCCATGATTCTGATTCAATGCCACGTGTTTGGACTGGAAAGGAGGACATCAGAGCAATTACAAAAATGGCTCGTTCTGCGTCCTTGAAGCTGCTGTCTGTTATGGCTGTTATACGCTTGGATGATGAACTCGACAATATTGAGAAGACATTGACGCTAGCTCTGTTTAATTCTACGGGCAACAATGCTACTAGCAAGAGCATCAGCACAATTGATTCACTTGCCTCAAGCACTTGGGAGAAGGTTGCACCAGAAAAGACGTTGATCACACCTGTGCAGTGTAAATCACTGTGGAGGCAATTTAAGAACGAGACAGAATATACCGTTACACAGGCCATTTCTGCACAGGAAGCTAACCGACGGAATAACAACTGGCTGCCACCTCCATGGGCAATCCTTGCCCTGGTTGTTCTTGGATTTAATGAATTTATGACTCTCTTAAGAAATCCTCTATGGCTCTTAGTTCTATTTGTCGGATACCTTGTATCCAAAGCCTTGTGGGTGCAATTAAATATTTCAGGAGAATTCCAAAACGGCGTGCTACCTGGACTTCTCTCTTTGTCAACCAAATTCATTCCAACGGTCATGAACCTCCTCAAAAAGCTTGCGGAAGAAGGACAAGCACCACCCACAAATAGCAACCAATCAATGAACTCTACAGCTCAATCCGAGGTTACAACCAATGGAGAAAGCAGCAGCAGCAGTAGCTCTGGTTCATCTCCAGCAAAAAACGTACCCATTGATACAAGTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006810 GO:0006888 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009832 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0017076 GO:0019001 GO:0022622 GO:0030029 GO:0030036 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032989 GO:0035639 GO:0036094 GO:0040007 GO:0042546 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060560 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0090558 GO:0090627 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0099402 GO:1901265 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RHD3

Protein Analysis

802

Amino Acids

89.09

Weight (kDa)

5.44

Isoelectric Point (pI)

43.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
URGCP_GTPase	PF25683	8 - 166	9.4e-09	URGCP-like GTPase domain
RHD3_GTPase	PF05879	43 - 278	3.9e-118	Root hair defective 3 GTP-binding protein (RHD3) GTPase domain
Sey1_3HB	PF20428	320 - 756	9.2e-165	Sey1 three-helix bundle domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13870 AT3G13870
fragaria_vesca	FvH4_6g33350 FvH4_6g33350 FvH4_6g33350 FvH4_6g33350
malus_domestica	MD09G1193400.v1.1 MD17G1174200.v1.1
prunus_persica	Prupe.3G049800_v2.0.a1
pyrus_communis	pycom09g10990 pycom17g17830
rosa_chinensis	RchiOBHm_Chr2g0143201 RchiOBHm_Chr2g0169871
rosa_laevigata	RLG00000020013
rosa_multiflora	Rmu_co8092052.1_g000001 Rmu_sc0000181.1_g000004 Rmu_sc0003950.1_g000012
rosa_roxburghii	Rroxscaffold_2G00102050 Rroxscaffold_5G00359600 Rroxscaffold_7G00190950 Rroxscaffold_7G00191100
rosa_rugosa	Rorug02G0379200
rosa_samantha	Rh1BG269400 Rh2AG432000 Rh2BG440600 Rh2CG385100 Rh2CG417900 Rh2DG450800 Rh7AG446900
rosa_wichuraiana	Rw2G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	380, 500
Acc16I	TGCGCA	1 cut(s)	1625
Acc36I	ACCTGC	1 cut(s)	673
Acc65I	GGTACC	1 cut(s)	290
AccB1I	GGYRCC	1 cut(s)	290
AccI	GTMKAC	1 cut(s)	687
AccII	CGCG	4 cut(s)	113, 475, 905, 921
AccIII	TCCGGA	1 cut(s)	956
AciI	CCGC	7 cut(s)	9, 113, 460, 473, 475, 729, 2261
AclWI	GGATC	1 cut(s)	834
AcoI	YGGCCR	1 cut(s)	1442
AcsI	RAATTY	6 cut(s)	231, 529, 887, 2078, 2177, 2222
AcuI	CTGAAG	1 cut(s)	1636
AcvI	CACGTG	1 cut(s)	1679
AcyI	GRCGYC	1 cut(s)	518
AfaI	GTAC	5 cut(s)	154, 292, 939, 1339, 2388
AfiI	CCNNNNNNNGG	2 cut(s)	956, 2056
AflII	CTTAAG	1 cut(s)	2092
AflIII	ACRYGT	2 cut(s)	384, 1678
AgeI	ACCGGT	1 cut(s)	1402
AjiI	CACGTC	1 cut(s)	1108
AjnI	CCWGG	4 cut(s)	447, 724, 2055, 2197
AjuI	GAANNNNNNNTTGG	2 cut(s)	872, 904
AleI	CACNNNNGTG	2 cut(s)	272, 1925
Alw21I	GWGCWC	3 cut(s)	346, 980, 1135
Alw26I	GTCTC	6 cut(s)	124, 219, 367, 691, 1499, 1958
AlwI	GGATC	1 cut(s)	834
Ama87I	CYCGRG	3 cut(s)	646, 1290, 1559
Aor13HI	TCCGGA	1 cut(s)	956
AoxI	GGCC	4 cut(s)	591, 1164, 1442, 1986
ApeKI	GCWGC	7 cut(s)	416, 1063, 1744, 2029, 2346, 2349, 2352
ApoI	RAATTY	6 cut(s)	231, 529, 887, 2078, 2177, 2222
ArsI	GACNNNNNNTTYG	2 cut(s)	669, 701
AsiGI	ACCGGT	1 cut(s)	1402
Asp700I	GAANNNNTTC	2 cut(s)	555, 1413
Asp718I	GGTACC	1 cut(s)	290
AspLEI	GCGC	4 cut(s)	251, 921, 1211, 1626
AspS9I	GGNCC	4 cut(s)	131, 592, 947, 1400
AsuHPI	GGTGA	2 cut(s)	323, 752
AsuII	TTCGAA	1 cut(s)	1518
AsuNHI	GCTAGC	1 cut(s)	1810
AvaI	CYCGRG	3 cut(s)	646, 1290, 1559
AvaII	GGWCC	3 cut(s)	131, 947, 1400
AxyI	CCTNAGG	1 cut(s)	588
BalI	TGGCCA	1 cut(s)	1444
BanI	GGYRCC	1 cut(s)	290
BanII	GRGCYC	1 cut(s)	980
BarI	GAAGNNNNNNTAC	2 cut(s)	921, 953
BauI	CACGAG	1 cut(s)	1572
BbrPI	CACGTG	1 cut(s)	1679
BbsI	GAAGAC	3 cut(s)	485, 558, 1805
Bbv12I	GWGCWC	3 cut(s)	346, 980, 1135
BbvCI	CCTCAGC	1 cut(s)	545
BbvI	GCAGC	7 cut(s)	428, 1050, 1731, 2016, 2358, 2361, 2364
BccI	CCATC	5 cut(s)	26, 32, 271, 290, 1415
BceAI	ACGGC	1 cut(s)	2203
BcgI	CGANNNNNNTGC	2 cut(s)	1550, 1584
BciT130I	CCWGG	4 cut(s)	449, 726, 2057, 2199
BciVI	GTATCC	3 cut(s)	1270, 2123, 2149
BclI	TGATCA	2 cut(s)	64, 1917
BcoDI	GTCTC	6 cut(s)	124, 219, 367, 691, 1499, 1958
BfaI	CTAG	4 cut(s)	243, 894, 1811, 1845
BfmI	CTRYAG	1 cut(s)	2310
BfrI	CTTAAG	1 cut(s)	2092
BfuAI	ACCTGC	1 cut(s)	673
BfuI	GTATCC	3 cut(s)	1270, 2123, 2149
BisI	GCNGC	8 cut(s)	9, 417, 1064, 1745, 2030, 2347, 2350, 2353
BlpI	GCTNAGC	1 cut(s)	974
BlsI	GCNGC	8 cut(s)	10, 418, 1065, 1746, 2031, 2348, 2351, 2354
Bme1390I	CCNGG	4 cut(s)	449, 726, 2057, 2199
Bme18I	GGWCC	3 cut(s)	131, 947, 1400
BmeT110I	CYCGRG	3 cut(s)	646, 1290, 1559
BmgBI	CACGTC	1 cut(s)	1108
BmgT120I	GGNCC	4 cut(s)	131, 592, 947, 1400
BmiI	GGNNCC	3 cut(s)	132, 178, 292
BmrFI	CCNGG	4 cut(s)	449, 726, 2057, 2199
BmsI	GCATC	6 cut(s)	187, 236, 447, 1162, 1611, 1863
BmtI	GCTAGC	1 cut(s)	1814
BpiI	GAAGAC	3 cut(s)	485, 558, 1805
BpmI	CTGGAG	3 cut(s)	1149, 1197, 2358
Bpu10I	CCTNAGC	1 cut(s)	545
Bpu1102I	GCTNAGC	1 cut(s)	974
Bpu14I	TTCGAA	1 cut(s)	1518
BpuEI	CTTGAG	2 cut(s)	1322, 1864
Bsa29I	ATCGAT	1 cut(s)	30
BsaAI	YACGTR	1 cut(s)	1679
BsaHI	GRCGYC	1 cut(s)	518
BsaI	GGTCTC	2 cut(s)	219, 1499
BsaJI	CCNNGG	6 cut(s)	473, 1167, 1590, 2039, 2055, 2322
BsaWI	WCCGGW	2 cut(s)	956, 1402
BsaXI	ACNNNNNCTCC	2 cut(s)	292, 322
Bsc4I	CCNNNNNNNGG	2 cut(s)	956, 2056
Bse118I	RCCGGY	1 cut(s)	1402
Bse1I	ACTGG	4 cut(s)	528, 539, 1693, 2030
Bse21I	CCTNAGG	1 cut(s)	588
BseAI	TCCGGA	1 cut(s)	956
BseBI	CCWGG	4 cut(s)	449, 726, 2057, 2199
BseCI	ATCGAT	1 cut(s)	30
BseDI	CCNNGG	6 cut(s)	473, 1167, 1590, 2039, 2055, 2322
BseGI	GGATG	9 cut(s)	10, 43, 202, 322, 1046, 1177, 1247, 1426, 1780
BseLI	CCNNNNNNNGG	2 cut(s)	956, 2056
BseMII	CTCAG	6 cut(s)	230, 378, 536, 602, 965, 1226
BseNI	ACTGG	4 cut(s)	528, 539, 1693, 2030
BseRI	GAGGAG	2 cut(s)	765, 2237
BseXI	GCAGC	7 cut(s)	428, 1050, 1731, 2016, 2358, 2361, 2364
BseYI	CCCAGC	1 cut(s)	21
BsgI	GTGCAG	2 cut(s)	1949, 1980
Bsh1236I	CGCG	4 cut(s)	113, 475, 905, 921
BshFI	GGCC	4 cut(s)	593, 1166, 1444, 1988
BshNI	GGYRCC	1 cut(s)	290
BshTI	ACCGGT	1 cut(s)	1402
BshVI	ATCGAT	1 cut(s)	30
BsiHKAI	GWGCWC	3 cut(s)	346, 980, 1135
BsiHKCI	CYCGRG	3 cut(s)	646, 1290, 1559
BsiSI	CCGG	2 cut(s)	957, 1403
BslFI	GGGAC	1 cut(s)	743
BslI	CCNNNNNNNGG	2 cut(s)	956, 2056
BsmAI	GTCTC	6 cut(s)	124, 219, 367, 691, 1499, 1958
BsmFI	GGGAC	1 cut(s)	743
BsmI	GAATGC	1 cut(s)	1156
BsnI	GGCC	4 cut(s)	593, 1166, 1444, 1988
Bso31I	GGTCTC	2 cut(s)	219, 1499
BsoBI	CYCGRG	3 cut(s)	646, 1290, 1559
Bsp119I	TTCGAA	1 cut(s)	1518
Bsp1286I	GDGCHC	3 cut(s)	346, 980, 1135
Bsp13I	TCCGGA	1 cut(s)	956
Bsp1407I	TGTACA	1 cut(s)	937
Bsp143I	GATC	6 cut(s)	64, 742, 826, 1043, 1555, 1917
Bsp1720I	GCTNAGC	1 cut(s)	974
Bsp19I	CCATGG	1 cut(s)	2039
Bsp68I	TCGCGA	1 cut(s)	905
BspACI	CCGC	7 cut(s)	9, 113, 460, 473, 475, 729, 2261
BspANI	GGCC	4 cut(s)	593, 1166, 1444, 1988
BspCNI	CTCAG	6 cut(s)	229, 377, 537, 601, 966, 1225
BspDI	ATCGAT	1 cut(s)	30
BspEI	TCCGGA	1 cut(s)	956
BspFNI	CGCG	4 cut(s)	113, 475, 905, 921
BspHI	TCATGA	2 cut(s)	394, 2238
BspLI	GGNNCC	3 cut(s)	132, 178, 292
BspMI	ACCTGC	1 cut(s)	673
BspOI	GCTAGC	1 cut(s)	1814
BspPI	GGATC	1 cut(s)	834
BspQI	GCTCTTC	3 cut(s)	660, 1419, 1606
BspT104I	TTCGAA	1 cut(s)	1518
BspT107I	GGYRCC	1 cut(s)	290
BspTI	CTTAAG	1 cut(s)	2092
BspTNI	GGTCTC	2 cut(s)	219, 1499
BsrFI	RCCGGY	1 cut(s)	1402
BsrGI	TGTACA	1 cut(s)	937
BsrI	ACTGG	4 cut(s)	528, 539, 1693, 2030
BssAI	RCCGGY	1 cut(s)	1402
BssECI	CCNNGG	6 cut(s)	473, 1167, 1590, 2039, 2055, 2322
BssMI	GATC	6 cut(s)	64, 742, 826, 1043, 1555, 1917
BssNI	GRCGYC	1 cut(s)	518
BssSI	CACGAG	1 cut(s)	1572
BssT1I	CCWWGG	3 cut(s)	1167, 1590, 2039
Bst2BI	CACGAG	1 cut(s)	1572
Bst2UI	CCWGG	4 cut(s)	449, 726, 2057, 2199
Bst4CI	ACNGT	8 cut(s)	271, 442, 705, 859, 942, 1944, 1978, 2236
Bst6I	CTCTTC	8 cut(s)	143, 660, 924, 1242, 1333, 1419, 1596, 1606
BstACI	GRCGYC	1 cut(s)	518
BstAFI	CTTAAG	1 cut(s)	2092
BstAPI	GCANNNNNTGC	2 cut(s)	1063, 2051
BstAUI	TGTACA	1 cut(s)	937
BstBAI	YACGTR	1 cut(s)	1679
BstBI	TTCGAA	1 cut(s)	1518
BstC8I	GCNNGC	9 cut(s)	13, 731, 735, 994, 1446, 1551, 1812, 2192, 2259
BstDSI	CCRYGG	2 cut(s)	473, 2039
BstF5I	GGATG	9 cut(s)	10, 43, 202, 322, 1046, 1177, 1247, 1426, 1780
BstFNI	CGCG	4 cut(s)	113, 475, 905, 921
BstHHI	GCGC	4 cut(s)	251, 921, 1211, 1626
BstKTI	GATC	6 cut(s)	67, 745, 829, 1046, 1558, 1920
BstMAI	GTCTC	6 cut(s)	124, 219, 367, 691, 1499, 1958
BstMBI	GATC	6 cut(s)	64, 742, 826, 1043, 1555, 1917
BstNI	CCWGG	4 cut(s)	449, 726, 2057, 2199
BstNSI	RCATGY	1 cut(s)	388
BstSCI	CCNGG	4 cut(s)	447, 724, 2055, 2197
BstSFI	CTRYAG	1 cut(s)	2310
BstUI	CGCG	4 cut(s)	113, 475, 905, 921
BstV1I	GCAGC	7 cut(s)	428, 1050, 1731, 2016, 2358, 2361, 2364
BstV2I	GAAGAC	3 cut(s)	485, 558, 1805
BstX2I	RGATCY	1 cut(s)	826
BstXI	CCANNNNNNTGG	2 cut(s)	1683, 2040
BstYI	RGATCY	1 cut(s)	826
Bsu15I	ATCGAT	1 cut(s)	30
Bsu36I	CCTNAGG	1 cut(s)	588
BsuI	GTATCC	3 cut(s)	1270, 2123, 2149
BsuRI	GGCC	4 cut(s)	593, 1166, 1444, 1988
BsuTUI	ATCGAT	1 cut(s)	30
BtgI	CCRYGG	2 cut(s)	473, 2039
BtgZI	GCGATG	2 cut(s)	877, 1631
BtrI	CACGTC	1 cut(s)	1108
BtsCI	GGATG	9 cut(s)	10, 43, 202, 322, 1046, 1177, 1247, 1426, 1780
BtsI	GCAGTG	1 cut(s)	1937
BtsIMutI	CAGTG	4 cut(s)	521, 546, 1937, 1940
BtuMI	TCGCGA	1 cut(s)	905
BveI	ACCTGC	1 cut(s)	673
Cac8I	GCNNGC	9 cut(s)	13, 731, 735, 994, 1446, 1551, 1812, 2192, 2259
CciI	TCATGA	2 cut(s)	394, 2238
CfoI	GCGC	4 cut(s)	251, 921, 1211, 1626
Cfr10I	RCCGGY	1 cut(s)	1402
Cfr13I	GGNCC	4 cut(s)	131, 592, 947, 1400
Cfr42I	CCGCGG	1 cut(s)	476
ClaI	ATCGAT	1 cut(s)	30
CseI	GACGC	3 cut(s)	526, 1722, 1816
Csp6I	GTAC	5 cut(s)	153, 291, 938, 1338, 2387
CspAI	ACCGGT	1 cut(s)	1402
CviAII	CATG	9 cut(s)	385, 395, 847, 1218, 1440, 1627, 1658, 2040, 2239
CviQI	GTAC	5 cut(s)	153, 291, 938, 1338, 2387
DpnI	GATC	6 cut(s)	66, 744, 828, 1045, 1557, 1919
DpnII	GATC	6 cut(s)	64, 742, 826, 1043, 1555, 1917
DraI	TTTAAA	1 cut(s)	435
EaeI	YGGCCR	1 cut(s)	1442
Eam1104I	CTCTTC	8 cut(s)	143, 660, 924, 1242, 1333, 1419, 1596, 1606
EarI	CTCTTC	8 cut(s)	143, 660, 924, 1242, 1333, 1419, 1596, 1606
Ecl136II	GAGCTC	1 cut(s)	978
Eco130I	CCWWGG	3 cut(s)	1167, 1590, 2039
Eco147I	AGGCCT	1 cut(s)	1166
Eco24I	GRGCYC	1 cut(s)	980
Eco31I	GGTCTC	2 cut(s)	219, 1499
Eco47I	GGWCC	3 cut(s)	131, 947, 1400
Eco53kI	GAGCTC	1 cut(s)	978
Eco57I	CTGAAG	1 cut(s)	1636
Eco72I	CACGTG	1 cut(s)	1679
Eco81I	CCTNAGG	1 cut(s)	588
Eco88I	CYCGRG	3 cut(s)	646, 1290, 1559
EcoICRI	GAGCTC	1 cut(s)	978
EcoRI	GAATTC	1 cut(s)	2177
EcoRII	CCWGG	4 cut(s)	447, 724, 2055, 2197
EcoT14I	CCWWGG	3 cut(s)	1167, 1590, 2039
EcoT22I	ATGCAT	2 cut(s)	202, 1223
EcoT38I	GRGCYC	1 cut(s)	980
ErhI	CCWWGG	3 cut(s)	1167, 1590, 2039
FaeI	CATG	9 cut(s)	388, 398, 850, 1221, 1443, 1630, 1661, 2043, 2242
FalI	AAGNNNNNCTT	2 cut(s)	1095, 1127
FaqI	GGGAC	1 cut(s)	743
FatI	CATG	9 cut(s)	384, 394, 846, 1217, 1439, 1626, 1657, 2039, 2238
FauI	CCCGC	1 cut(s)	722
FbaI	TGATCA	2 cut(s)	64, 1917
FblI	GTMKAC	1 cut(s)	687
Fnu4HI	GCNGC	8 cut(s)	9, 417, 1064, 1745, 2030, 2347, 2350, 2353
FokI	GGATG	9 cut(s)	17, 50, 209, 329, 1033, 1184, 1254, 1433, 1787
FriOI	GRGCYC	1 cut(s)	980
Fsp4HI	GCNGC	8 cut(s)	9, 417, 1064, 1745, 2030, 2347, 2350, 2353
FspAI	RTGCGCAY	1 cut(s)	1625
FspBI	CTAG	4 cut(s)	243, 894, 1811, 1845
FspI	TGCGCA	1 cut(s)	1625
GlaI	GCGC	4 cut(s)	250, 920, 1210, 1625
GluI	GCNGC	8 cut(s)	9, 417, 1064, 1745, 2030, 2347, 2350, 2353
GsaI	CCCAGC	1 cut(s)	25
GsuI	CTGGAG	3 cut(s)	1149, 1197, 2358
HaeIII	GGCC	4 cut(s)	593, 1166, 1444, 1988
HapII	CCGG	2 cut(s)	957, 1403
HgaI	GACGC	3 cut(s)	526, 1722, 1816
HhaI	GCGC	4 cut(s)	251, 921, 1211, 1626
Hin1I	GRCGYC	1 cut(s)	518
Hin1II	CATG	9 cut(s)	388, 398, 850, 1221, 1443, 1630, 1661, 2043, 2242
Hin6I	GCGC	4 cut(s)	249, 919, 1209, 1624
HinP1I	GCGC	4 cut(s)	249, 919, 1209, 1624
HincII	GTYRAC	1 cut(s)	2217
HindII	GTYRAC	1 cut(s)	2217
HindIII	AAGCTT	3 cut(s)	994, 1298, 2255
HinfI	GANTC	7 cut(s)	163, 572, 1373, 1661, 1667, 1868, 2086
HpaII	CCGG	2 cut(s)	957, 1403
HphI	GGTGA	2 cut(s)	323, 752
Hpy166II	GTNNAC	3 cut(s)	134, 688, 2217
Hpy188I	TCNGA	7 cut(s)	219, 367, 1003, 1666, 1706, 2129, 2323
Hpy8I	GTNNAC	3 cut(s)	134, 688, 2217
Hpy99I	CGWCG	2 cut(s)	750, 2016
HpyAV	CCTTC	7 cut(s)	204, 1156, 1175, 1466, 1624, 1888, 2261
HpyCH4III	ACNGT	8 cut(s)	271, 442, 705, 859, 942, 1944, 1978, 2236
HpyCH4IV	ACGT	4 cut(s)	1107, 1678, 1913, 2385
HpySE526I	ACGT	4 cut(s)	1107, 1678, 1913, 2385
Hsp92I	GRCGYC	1 cut(s)	518
Hsp92II	CATG	9 cut(s)	388, 398, 850, 1221, 1443, 1630, 1661, 2043, 2242
HspAI	GCGC	4 cut(s)	249, 919, 1209, 1624
Kpn2I	TCCGGA	1 cut(s)	956
KpnI	GGTACC	1 cut(s)	294
Ksp22I	TGATCA	2 cut(s)	64, 1917
KspI	CCGCGG	1 cut(s)	476
Kzo9I	GATC	6 cut(s)	64, 742, 826, 1043, 1555, 1917
LguI	GCTCTTC	3 cut(s)	660, 1419, 1606
LmnI	GCTCC	1 cut(s)	1130
Lsp1109I	GCAGC	7 cut(s)	428, 1050, 1731, 2016, 2358, 2361, 2364
LweI	GCATC	6 cut(s)	187, 236, 447, 1162, 1611, 1863
MaeI	CTAG	4 cut(s)	243, 894, 1811, 1845
MaeII	ACGT	4 cut(s)	1107, 1678, 1913, 2385
MaeIII	GTNAC	2 cut(s)	1978, 2326
MalI	GATC	6 cut(s)	66, 744, 828, 1045, 1557, 1919
MboI	GATC	6 cut(s)	64, 742, 826, 1043, 1555, 1917
MfeI	CAATTG	1 cut(s)	1863
MflI	RGATCY	1 cut(s)	826
MhlI	GDGCHC	3 cut(s)	346, 980, 1135
MlsI	TGGCCA	1 cut(s)	1444
MluNI	TGGCCA	1 cut(s)	1444
MlyI	GAGTC	2 cut(s)	1382, 2080
MmeI	TCCRAC	4 cut(s)	906, 1524, 2107, 2255
Mox20I	TGGCCA	1 cut(s)	1444
Mph1103I	ATGCAT	2 cut(s)	202, 1223
MroI	TCCGGA	1 cut(s)	956
MroXI	GAANNNNTTC	2 cut(s)	555, 1413
MscI	TGGCCA	1 cut(s)	1444
MseI	TTAA	8 cut(s)	48, 84, 434, 1821, 1956, 2073, 2093, 2162
MslI	CAYNNNNRTG	3 cut(s)	272, 1925, 2038
Msp20I	TGGCCA	1 cut(s)	1444
MspA1I	CMGCKG	2 cut(s)	475, 1063
MspCI	CTTAAG	1 cut(s)	2092
MspI	CCGG	2 cut(s)	957, 1403
MspR9I	CCNGG	4 cut(s)	449, 726, 2057, 2199
MunI	CAATTG	1 cut(s)	1863
Mva1269I	GAATGC	1 cut(s)	1156
MvaI	CCWGG	4 cut(s)	449, 726, 2057, 2199
MvnI	CGCG	4 cut(s)	113, 475, 905, 921
NcoI	CCATGG	1 cut(s)	2039
NdeII	GATC	6 cut(s)	64, 742, 826, 1043, 1555, 1917
NheI	GCTAGC	1 cut(s)	1810
NlaIII	CATG	9 cut(s)	388, 398, 850, 1221, 1443, 1630, 1661, 2043, 2242
NlaIV	GGNNCC	3 cut(s)	132, 178, 292
NruI	TCGCGA	1 cut(s)	905
NsbI	TGCGCA	1 cut(s)	1625
NsiI	ATGCAT	2 cut(s)	202, 1223
NspI	RCATGY	1 cut(s)	388
NspV	TTCGAA	1 cut(s)	1518
OliI	CACNNNNGTG	2 cut(s)	272, 1925
PaeR7I	CTCGAG	2 cut(s)	646, 1559
PagI	TCATGA	2 cut(s)	394, 2238
PceI	AGGCCT	1 cut(s)	1166
PciI	ACATGT	1 cut(s)	384
PciSI	GCTCTTC	3 cut(s)	660, 1419, 1606
PcsI	WCGNNNNNNNCGW	1 cut(s)	1524
PctI	GAATGC	1 cut(s)	1156
PdmI	GAANNNNTTC	2 cut(s)	555, 1413
PfeI	GAWTC	5 cut(s)	163, 572, 1661, 1667, 1868
PinAI	ACCGGT	1 cut(s)	1402
PkrI	GCNGC	8 cut(s)	10, 418, 1065, 1746, 2031, 2348, 2351, 2354
PleI	GAGTC	2 cut(s)	1381, 2080
PmaCI	CACGTG	1 cut(s)	1679
PmlI	CACGTG	1 cut(s)	1679
PpsI	GAGTC	2 cut(s)	1381, 2080
Ppu21I	YACGTR	1 cut(s)	1679
PscI	ACATGT	1 cut(s)	384
PsiI	TTATAA	2 cut(s)	380, 500
Psp124BI	GAGCTC	1 cut(s)	980
Psp6I	CCWGG	4 cut(s)	447, 724, 2055, 2197
PspCI	CACGTG	1 cut(s)	1679
PspFI	CCCAGC	1 cut(s)	21
PspGI	CCWGG	4 cut(s)	447, 724, 2055, 2197
PspN4I	GGNNCC	3 cut(s)	132, 178, 292
PspPI	GGNCC	4 cut(s)	131, 592, 947, 1400
PsrI	GAACNNNNNNTAC	2 cut(s)	2350, 2382
PsuI	RGATCY	1 cut(s)	826
PvuII	CAGCTG	1 cut(s)	1063
RruI	TCGCGA	1 cut(s)	905
RsaI	GTAC	5 cut(s)	154, 292, 939, 1339, 2388
RsaNI	GTAC	5 cut(s)	153, 291, 938, 1338, 2387
RseI	CAYNNNNRTG	3 cut(s)	272, 1925, 2038
SacI	GAGCTC	1 cut(s)	980
SacII	CCGCGG	1 cut(s)	476
SapI	GCTCTTC	3 cut(s)	660, 1419, 1606
SaqAI	TTAA	8 cut(s)	48, 84, 434, 1821, 1956, 2073, 2093, 2162
SatI	GCNGC	8 cut(s)	9, 417, 1064, 1745, 2030, 2347, 2350, 2353
Sau3AI	GATC	6 cut(s)	64, 742, 826, 1043, 1555, 1917
Sau96I	GGNCC	4 cut(s)	131, 592, 947, 1400
SchI	GAGTC	2 cut(s)	1382, 2080
ScrFI	CCNGG	4 cut(s)	449, 726, 2057, 2199
SduI	GDGCHC	3 cut(s)	346, 980, 1135
SfaNI	GCATC	6 cut(s)	187, 236, 447, 1162, 1611, 1863
SfcI	CTRYAG	1 cut(s)	2310
Sfr274I	CTCGAG	2 cut(s)	646, 1559
Sfr303I	CCGCGG	1 cut(s)	476
SfuI	TTCGAA	1 cut(s)	1518
SgrBI	CCGCGG	1 cut(s)	476
SinI	GGWCC	3 cut(s)	131, 947, 1400
SlaI	CTCGAG	2 cut(s)	646, 1559
SmiMI	CAYNNNNRTG	3 cut(s)	272, 1925, 2038
SmlI	CTYRAG	5 cut(s)	646, 1301, 1559, 1879, 2092
SmoI	CTYRAG	5 cut(s)	646, 1301, 1559, 1879, 2092
SseBI	AGGCCT	1 cut(s)	1166
SsiI	CCGC	7 cut(s)	9, 113, 460, 473, 475, 729, 2261
SspI	AATATT	2 cut(s)	1792, 2167
SspMI	CTAG	4 cut(s)	243, 894, 1811, 1845
SstI	GAGCTC	1 cut(s)	980
StuI	AGGCCT	1 cut(s)	1166
StyD4I	CCNGG	4 cut(s)	447, 724, 2055, 2197
StyI	CCWWGG	3 cut(s)	1167, 1590, 2039
TaaI	ACNGT	8 cut(s)	271, 442, 705, 859, 942, 1944, 1978, 2236
TaiI	ACGT	4 cut(s)	1110, 1681, 1916, 2388
TaqI	TCGA	8 cut(s)	30, 122, 330, 647, 745, 1518, 1560, 1785
TatI	WGTACW	1 cut(s)	937
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	5 cut(s)	163, 572, 1661, 1667, 1868
Tru1I	TTAA	8 cut(s)	48, 84, 434, 1821, 1956, 2073, 2093, 2162
Tru9I	TTAA	8 cut(s)	48, 84, 434, 1821, 1956, 2073, 2093, 2162
TscAI	CASTG	4 cut(s)	528, 546, 1937, 1947
TseI	GCWGC	7 cut(s)	416, 1063, 1744, 2029, 2346, 2349, 2352
TspGWI	ACGGA	4 cut(s)	529, 1325, 1552, 2029
TspRI	CASTG	4 cut(s)	528, 546, 1937, 1947
Vha464I	CTTAAG	1 cut(s)	2092
VpaK11BI	GGWCC	3 cut(s)	131, 947, 1400
XapI	RAATTY	6 cut(s)	231, 529, 887, 2078, 2177, 2222
XceI	RCATGY	1 cut(s)	388
XcmI	CCANNNNNNNNNTGG	2 cut(s)	29, 1109
XhoI	CTCGAG	2 cut(s)	646, 1559
XmiI	GTMKAC	1 cut(s)	687
XmnI	GAANNNNTTC	2 cut(s)	555, 1413
XspI	CTAG	4 cut(s)	243, 894, 1811, 1845
Zsp2I	ATGCAT	2 cut(s)	202, 1223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.