Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004898

Physical Location & Seq

Genomic Coordinates Forward (+)

52421844 .. 52425975

Gene Structure 4132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG385100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGTATCAAAGCGGTGGTTAGAGTATGTTGAATTTCATGATCTCAGATTCATAATCTCCGACTCCGGCGAATATTACTCAAATCGAGGGCGAGATCATCAGGAAGCCTTAGGACTCACTGTCGTTACAGGACTCACCATTGTCATACGCGGAGGTGAGCACCACCGGTGCCACCAGCAAGCTCAACGAGGTCGACATCTAGTCCGGAAGCTAACAAGCGTAGCAACAATTGGCTACCACCTTCTTGGGCTATTCTTGCCTTGGTTGTCCTCGGATTTAATGAATTCAGAAATCATGACAGTCTTAAGGCATTTCGCTTTATACCTTAGTGATGATTATATCTTAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

13.44

Weight (kDa)

7.1

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13870 AT3G13870
fragaria_vesca	FvH4_6g33350 FvH4_6g33350 FvH4_6g33350 FvH4_6g33350
malus_domestica	MD09G1193400.v1.1 MD17G1174200.v1.1
prunus_persica	Prupe.3G049800_v2.0.a1
pyrus_communis	pycom09g10990 pycom17g17830
rosa_chinensis	RchiOBHm_Chr2g0143201 RchiOBHm_Chr2g0169871
rosa_laevigata	RLG00000020013
rosa_multiflora	Rmu_co8092052.1_g000001 Rmu_sc0000181.1_g000004 Rmu_sc0003950.1_g000012
rosa_roxburghii	Rroxscaffold_2G00102050 Rroxscaffold_5G00359600 Rroxscaffold_7G00190950 Rroxscaffold_7G00191100
rosa_rugosa	Rorug02G0379200
rosa_samantha	Rh1BG269400 Rh2AG432000 Rh2BG440600 Rh2CG385100 Rh2CG417900 Rh2DG450800 Rh7AG446900
rosa_wichuraiana	Rw2G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	168
AccI	GTMKAC	1 cut(s)	193
AccII	CGCG	1 cut(s)	150
AccIII	TCCGGA	1 cut(s)	204
AciI	CCGC	2 cut(s)	13, 150
AcsI	RAATTY	2 cut(s)	32, 283
AflII	CTTAAG	1 cut(s)	304
AgeI	ACCGGT	1 cut(s)	165
AgsI	TTSAA	1 cut(s)	32
AhdI	GACNNNNNGTC	2 cut(s)	119, 200
AluBI	AGCT	2 cut(s)	182, 211
AluI	AGCT	2 cut(s)	182, 211
Alw21I	GWGCWC	1 cut(s)	162
Aor13HI	TCCGGA	1 cut(s)	204
ApoI	RAATTY	2 cut(s)	32, 283
AsiGI	ACCGGT	1 cut(s)	165
AsuHPI	GGTGA	2 cut(s)	127, 167
AxyI	CCTNAGG	1 cut(s)	109
BanI	GGYRCC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	162
BfaI	CTAG	1 cut(s)	200
BfrI	CTTAAG	1 cut(s)	304
BmeRI	GACNNNNNGTC	2 cut(s)	119, 200
BmiI	GGNNCC	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	260, 270
BsaWI	WCCGGW	2 cut(s)	165, 204
Bse118I	RCCGGY	1 cut(s)	165
Bse21I	CCTNAGG	1 cut(s)	109
BseAI	TCCGGA	1 cut(s)	204
BseDI	CCNNGG	2 cut(s)	260, 270
BseMII	CTCAG	1 cut(s)	58
Bsh1236I	CGCG	1 cut(s)	150
BshNI	GGYRCC	1 cut(s)	168
BshTI	ACCGGT	1 cut(s)	165
BsiHKAI	GWGCWC	1 cut(s)	162
BsiSI	CCGG	3 cut(s)	66, 166, 205
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp13I	TCCGGA	1 cut(s)	204
Bsp143I	GATC	2 cut(s)	40, 94
BspACI	CCGC	2 cut(s)	13, 150
BspCNI	CTCAG	1 cut(s)	57
BspEI	TCCGGA	1 cut(s)	204
BspFNI	CGCG	1 cut(s)	150
BspHI	TCATGA	2 cut(s)	37, 294
BspLI	GGNNCC	1 cut(s)	170
BspT107I	GGYRCC	1 cut(s)	168
BspTI	CTTAAG	1 cut(s)	304
BsrFI	RCCGGY	1 cut(s)	165
BssAI	RCCGGY	1 cut(s)	165
BssECI	CCNNGG	2 cut(s)	260, 270
BssMI	GATC	2 cut(s)	40, 94
BssT1I	CCWWGG	1 cut(s)	260
Bst4CI	ACNGT	2 cut(s)	121, 301
BstAFI	CTTAAG	1 cut(s)	304
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	4 cut(s)	44, 109, 326, 343
BstFNI	CGCG	1 cut(s)	150
BstKTI	GATC	2 cut(s)	43, 97
BstMBI	GATC	2 cut(s)	40, 94
BstMWI	GCNNNNNNNGC	1 cut(s)	256
BstUI	CGCG	1 cut(s)	150
BstXI	CCANNNNNNTGG	1 cut(s)	245
Bsu36I	CCTNAGG	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	180
CciI	TCATGA	2 cut(s)	37, 294
Cfr10I	RCCGGY	1 cut(s)	165
CspAI	ACCGGT	1 cut(s)	165
CviAII	CATG	2 cut(s)	38, 295
CviJI	RGCY	6 cut(s)	107, 182, 211, 234, 250, 347
CviKI_1	RGCY	6 cut(s)	107, 182, 211, 234, 250, 347
DdeI	CTNAG	4 cut(s)	44, 109, 326, 343
DpnI	GATC	2 cut(s)	42, 96
DpnII	GATC	2 cut(s)	40, 94
DriI	GACNNNNNGTC	2 cut(s)	119, 200
Eam1105I	GACNNNNNGTC	2 cut(s)	119, 200
Eco130I	CCWWGG	1 cut(s)	260
Eco81I	CCTNAGG	1 cut(s)	109
EcoRI	GAATTC	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	260
ErhI	CCWWGG	1 cut(s)	260
FaeI	CATG	2 cut(s)	41, 298
FaiI	YATR	7 cut(s)	27, 39, 53, 146, 296, 322, 339
FatI	CATG	2 cut(s)	37, 294
FblI	GTMKAC	1 cut(s)	193
FspBI	CTAG	1 cut(s)	200
HapII	CCGG	3 cut(s)	66, 166, 205
Hin1II	CATG	2 cut(s)	41, 298
HincII	GTYRAC	1 cut(s)	194
HindII	GTYRAC	1 cut(s)	194
HinfI	GANTC	4 cut(s)	48, 62, 114, 132
HpaII	CCGG	3 cut(s)	66, 166, 205
HphI	GGTGA	2 cut(s)	127, 167
Hpy166II	GTNNAC	1 cut(s)	194
Hpy188I	TCNGA	4 cut(s)	47, 61, 274, 289
Hpy188III	TCNNGA	4 cut(s)	38, 101, 205, 295
Hpy8I	GTNNAC	1 cut(s)	194
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	2 cut(s)	121, 301
HpyF10VI	GCNNNNNNNGC	1 cut(s)	256
HpyF3I	CTNAG	4 cut(s)	44, 109, 326, 343
Hsp92II	CATG	2 cut(s)	41, 298
Kpn2I	TCCGGA	1 cut(s)	204
Kzo9I	GATC	2 cut(s)	40, 94
LpnPI	CCDG	6 cut(s)	79, 86, 114, 179, 188, 218
MaeI	CTAG	1 cut(s)	200
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	2 cut(s)	42, 96
MboI	GATC	2 cut(s)	40, 94
MfeI	CAATTG	1 cut(s)	228
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	3 cut(s)	32, 228, 283
MlyI	GAGTC	3 cut(s)	56, 108, 126
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	4 cut(s)	80, 146, 182, 280
MroI	TCCGGA	1 cut(s)	204
MseI	TTAA	2 cut(s)	278, 305
MspCI	CTTAAG	1 cut(s)	304
MspI	CCGG	3 cut(s)	66, 166, 205
MunI	CAATTG	1 cut(s)	228
MvnI	CGCG	1 cut(s)	150
MwoI	GCNNNNNNNGC	1 cut(s)	256
NdeII	GATC	2 cut(s)	40, 94
NlaIII	CATG	2 cut(s)	41, 298
NlaIV	GGNNCC	1 cut(s)	170
PagI	TCATGA	2 cut(s)	37, 294
PfeI	GAWTC	1 cut(s)	48
PinAI	ACCGGT	1 cut(s)	165
PleI	GAGTC	3 cut(s)	56, 108, 126
PpsI	GAGTC	3 cut(s)	56, 108, 126
PspN4I	GGNNCC	1 cut(s)	170
SalI	GTCGAC	1 cut(s)	192
SaqAI	TTAA	2 cut(s)	278, 305
Sau3AI	GATC	2 cut(s)	40, 94
SchI	GAGTC	3 cut(s)	56, 108, 126
SduI	GDGCHC	1 cut(s)	162
SetI	ASST	6 cut(s)	157, 184, 193, 213, 243, 327
SgrAI	CRCCGGYG	1 cut(s)	165
SmlI	CTYRAG	1 cut(s)	304
SmoI	CTYRAG	1 cut(s)	304
Sse9I	AATT	3 cut(s)	32, 228, 283
SsiI	CCGC	2 cut(s)	13, 150
SspI	AATATT	1 cut(s)	74
SspMI	CTAG	1 cut(s)	200
StyI	CCWWGG	1 cut(s)	260
TaaI	ACNGT	2 cut(s)	121, 301
TaqI	TCGA	2 cut(s)	85, 193
TasI	AATT	3 cut(s)	32, 228, 283
TfiI	GAWTC	1 cut(s)	48
Tru1I	TTAA	2 cut(s)	278, 305
Tru9I	TTAA	2 cut(s)	278, 305
TscAI	CASTG	1 cut(s)	124
TspDTI	ATGAA	3 cut(s)	26, 40, 296
TspRI	CASTG	1 cut(s)	124
Vha464I	CTTAAG	1 cut(s)	304
XapI	RAATTY	2 cut(s)	32, 283
XmiI	GTMKAC	1 cut(s)	193
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.