Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004898

Physical Location & Seq

Genomic Coordinates Reverse (-)

40311324 .. 40314722

Gene Structure 3399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG269400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGGTTCAAATTGGGCAGACTTACTCTTCACTTCTCCAAACTGGTGGTGCGATGCAAACTCTAATAAAAGGAAGCTAACAAGCGTAGCAACAATTGGCTACTACCTTCTTGGGCTATTCTTGCCTTGGTTGTCCTCGGATTTAATGAATTCAGAAATCATGACAGTATTAAGAAATCCTTTGTATCTGCTGGTCATCTTTGTTGGCTTTTTACTCTTTAAAGTACTATGGGTGCAGCTAGACATCTTGGCCGAATTCCGCAATGGCGCTCTTCCGGGACTTCTCCCTTTGTCCACGAAGTTGGTGCCAACTATCATGAACATGATGAAGAGATTACCGGATGAAGGGGAAGCAGCTACTGTGGATAACAATCCTCAAAGAAACCCTGCAGTAGCATCAAAAGGCATAAGCAATGGAGCAAATGCAGGAGGATTCCCTGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006810 GO:0006888 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009832 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0017076 GO:0019001 GO:0022622 GO:0030029 GO:0030036 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032989 GO:0035639 GO:0036094 GO:0040007 GO:0042546 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060560 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0090558 GO:0090627 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0099402 GO:1901265 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RHD3

Protein Analysis

148

Amino Acids

16.36

Weight (kDa)

5.41

Isoelectric Point (pI)

32.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sey1_3HB	PF20428	52 - 114	6e-07	Sey1 three-helix bundle domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13870 AT3G13870
fragaria_vesca	FvH4_6g33350 FvH4_6g33350 FvH4_6g33350 FvH4_6g33350
malus_domestica	MD09G1193400.v1.1 MD17G1174200.v1.1
prunus_persica	Prupe.3G049800_v2.0.a1
pyrus_communis	pycom09g10990 pycom17g17830
rosa_chinensis	RchiOBHm_Chr2g0143201 RchiOBHm_Chr2g0169871
rosa_laevigata	RLG00000020013
rosa_multiflora	Rmu_co8092052.1_g000001 Rmu_sc0000181.1_g000004 Rmu_sc0003950.1_g000012
rosa_roxburghii	Rroxscaffold_2G00102050 Rroxscaffold_5G00359600 Rroxscaffold_7G00190950 Rroxscaffold_7G00191100
rosa_rugosa	Rorug02G0379200
rosa_samantha	Rh1BG269400 Rh2AG432000 Rh2BG440600 Rh2CG385100 Rh2CG417900 Rh2DG450800 Rh7AG446900
rosa_wichuraiana	Rw2G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	304
AciI	CCGC	1 cut(s)	259
AcoI	YGGCCR	1 cut(s)	249
AcsI	RAATTY	2 cut(s)	148, 254
AfaI	GTAC	1 cut(s)	225
AfiI	CCNNNNNNNGG	1 cut(s)	344
AgsI	TTSAA	1 cut(s)	9
AluBI	AGCT	3 cut(s)	76, 238, 356
AluI	AGCT	3 cut(s)	76, 238, 356
AlwNI	CAGNNNCTG	1 cut(s)	359
AoxI	GGCC	1 cut(s)	249
ApeKI	GCWGC	2 cut(s)	235, 353
ApoI	RAATTY	2 cut(s)	148, 254
AspLEI	GCGC	1 cut(s)	269
AsuC2I	CCSGG	1 cut(s)	276
BanI	GGYRCC	1 cut(s)	304
BbvI	GCAGC	2 cut(s)	247, 365
BcgI	CGANNNNNNTGC	2 cut(s)	286, 320
BcnI	CCSGG	1 cut(s)	276
BfaI	CTAG	1 cut(s)	239
BfmI	CTRYAG	1 cut(s)	387
BfoI	RGCGCY	1 cut(s)	270
BisI	GCNGC	2 cut(s)	236, 354
BlsI	GCNGC	2 cut(s)	237, 355
BmcAI	AGTACT	1 cut(s)	225
Bme1390I	CCNGG	1 cut(s)	276
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	2 cut(s)	43, 404
BpuMI	CCSGG	1 cut(s)	276
BsaBI	GATNNNNATC	1 cut(s)	369
BsaJI	CCNNGG	2 cut(s)	125, 135
BsaWI	WCCGGW	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	1 cut(s)	344
Bse1I	ACTGG	1 cut(s)	47
Bse3DI	GCAATG	2 cut(s)	268, 418
Bse8I	GATNNNNATC	1 cut(s)	369
BseDI	CCNNGG	2 cut(s)	125, 135
BseGI	GGATG	1 cut(s)	346
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	1 cut(s)	344
BseMI	GCAATG	2 cut(s)	268, 418
BseNI	ACTGG	1 cut(s)	47
BseXI	GCAGC	2 cut(s)	247, 365
BsgI	GTGCAG	1 cut(s)	254
BshFI	GGCC	1 cut(s)	251
BshNI	GGYRCC	1 cut(s)	304
BsiSI	CCGG	2 cut(s)	275, 338
BslFI	GGGAC	1 cut(s)	291
BslI	CCNNNNNNNGG	1 cut(s)	344
BsmFI	GGGAC	1 cut(s)	291
BsnI	GGCC	1 cut(s)	251
BspACI	CCGC	1 cut(s)	259
BspANI	GGCC	1 cut(s)	251
BspHI	TCATGA	2 cut(s)	159, 315
BspLI	GGNNCC	1 cut(s)	306
BspMAI	CTGCAG	1 cut(s)	391
BspQI	GCTCTTC	1 cut(s)	276
BspT107I	GGYRCC	1 cut(s)	304
BsrDI	GCAATG	2 cut(s)	268, 418
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	2 cut(s)	125, 135
BssT1I	CCWWGG	1 cut(s)	125
Bst4CI	ACNGT	2 cut(s)	166, 361
Bst6I	CTCTTC	4 cut(s)	32, 276, 323, 435
BstF5I	GGATG	1 cut(s)	346
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	269
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	274
BstSFI	CTRYAG	1 cut(s)	387
BstV1I	GCAGC	2 cut(s)	247, 365
BstXI	CCANNNNNNTGG	2 cut(s)	45, 301
BsuRI	GGCC	1 cut(s)	251
BtgZI	GCGATG	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	346
CaiI	CAGNNNCTG	1 cut(s)	359
CciI	TCATGA	2 cut(s)	159, 315
CfoI	GCGC	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	3 cut(s)	160, 316, 322
CviJI	RGCY	7 cut(s)	76, 99, 115, 207, 238, 251, 356
CviKI_1	RGCY	7 cut(s)	76, 99, 115, 207, 238, 251, 356
CviQI	GTAC	1 cut(s)	224
DraI	TTTAAA	1 cut(s)	220
EaeI	YGGCCR	1 cut(s)	249
Eam1104I	CTCTTC	4 cut(s)	32, 276, 323, 435
EarI	CTCTTC	4 cut(s)	32, 276, 323, 435
Eco130I	CCWWGG	1 cut(s)	125
EcoRI	GAATTC	2 cut(s)	148, 254
EcoT14I	CCWWGG	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	125
FaeI	CATG	3 cut(s)	163, 319, 325
FaiI	YATR	5 cut(s)	161, 229, 317, 323, 407
FalI	AAGNNNNNCTT	2 cut(s)	163, 195
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	3 cut(s)	159, 315, 321
Fnu4HI	GCNGC	2 cut(s)	236, 354
FokI	GGATG	1 cut(s)	353
Fsp4HI	GCNGC	2 cut(s)	236, 354
FspBI	CTAG	1 cut(s)	239
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	2 cut(s)	236, 354
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	2 cut(s)	275, 338
HhaI	GCGC	1 cut(s)	269
Hin1II	CATG	3 cut(s)	163, 319, 325
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HinfI	GANTC	1 cut(s)	432
HpaII	CCGG	2 cut(s)	275, 338
Hpy166II	GTNNAC	1 cut(s)	294
Hpy188I	TCNGA	2 cut(s)	139, 154
Hpy188III	TCNNGA	2 cut(s)	160, 316
Hpy8I	GTNNAC	1 cut(s)	294
HpyAV	CCTTC	2 cut(s)	116, 338
HpyCH4III	ACNGT	2 cut(s)	166, 361
HpyCH4V	TGCA	4 cut(s)	56, 235, 389, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
Hsp92II	CATG	3 cut(s)	163, 319, 325
HspAI	GCGC	1 cut(s)	267
LguI	GCTCTTC	1 cut(s)	276
LmnI	GCTCC	1 cut(s)	416
LpnPI	CCDG	6 cut(s)	28, 176, 288, 351, 399, 411
Lsp1109I	GCAGC	2 cut(s)	247, 365
LweI	GCATC	2 cut(s)	43, 404
MaeI	CTAG	1 cut(s)	239
MboII	GAAGA	3 cut(s)	19, 263, 340
MfeI	CAATTG	1 cut(s)	93
MluCI	AATT	4 cut(s)	10, 93, 148, 254
MnlI	CCTC	3 cut(s)	145, 384, 422
MseI	TTAA	3 cut(s)	143, 170, 219
MslI	CAYNNNNRTG	1 cut(s)	320
MspI	CCGG	2 cut(s)	275, 338
MspR9I	CCNGG	1 cut(s)	276
MunI	CAATTG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	121
NciI	CCSGG	1 cut(s)	276
NlaIII	CATG	3 cut(s)	163, 319, 325
NlaIV	GGNNCC	1 cut(s)	306
PagI	TCATGA	2 cut(s)	159, 315
PciSI	GCTCTTC	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	432
PfoI	TCCNGGA	1 cut(s)	274
PkrI	GCNGC	2 cut(s)	237, 355
PspN4I	GGNNCC	1 cut(s)	306
PstI	CTGCAG	1 cut(s)	391
PstNI	CAGNNNCTG	1 cut(s)	359
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
RseI	CAYNNNNRTG	1 cut(s)	320
SapI	GCTCTTC	1 cut(s)	276
SaqAI	TTAA	3 cut(s)	143, 170, 219
SatI	GCNGC	2 cut(s)	236, 354
ScaI	AGTACT	1 cut(s)	225
ScrFI	CCNGG	1 cut(s)	276
SetI	ASST	4 cut(s)	78, 108, 240, 358
SfaNI	GCATC	2 cut(s)	43, 404
SfcI	CTRYAG	1 cut(s)	387
SmiMI	CAYNNNNRTG	1 cut(s)	320
Sse9I	AATT	4 cut(s)	10, 93, 148, 254
SsiI	CCGC	1 cut(s)	259
SspMI	CTAG	1 cut(s)	239
StyD4I	CCNGG	1 cut(s)	274
StyI	CCWWGG	1 cut(s)	125
TaaI	ACNGT	2 cut(s)	166, 361
TasI	AATT	4 cut(s)	10, 93, 148, 254
TatI	WGTACW	1 cut(s)	223
TfiI	GAWTC	1 cut(s)	432
Tru1I	TTAA	3 cut(s)	143, 170, 219
Tru9I	TTAA	3 cut(s)	143, 170, 219
TseI	GCWGC	2 cut(s)	235, 353
TspDTI	ATGAA	4 cut(s)	161, 332, 341, 357
XapI	RAATTY	2 cut(s)	148, 254
XspI	CTAG	1 cut(s)	239
ZrmI	AGTACT	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.