Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004898

Physical Location & Seq

Genomic Coordinates Forward (+)

31383616 .. 31384351

Gene Structure 736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00190950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGAACATGATGCACTACGCGGTGGTGAGCACCACGGCGCCATCGGCAAGCTCAACGAGGTCGAGATCGAGTACGGCGAGGTCTTGTACCCCTGCCTTAGTAAAGCCAACAAGGATAATAACAATTGGCTACCACCTCCTTGGGCTATTCTTGCCTTGGTTGTCCTCGGATTTAATGAATTCATGAATCATGATAGTCTTAAGAAATCCATTGTATCTGCTGGTCATCCTCATTGGCTTTTTACTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006810 GO:0006888 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009832 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0017076 GO:0019001 GO:0022622 GO:0030029 GO:0030036 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032989 GO:0035639 GO:0036094 GO:0040007 GO:0042546 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060560 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0090558 GO:0090627 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0099402 GO:1901265 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RHD3

Protein Analysis

83

Amino Acids

9.33

Weight (kDa)

5.78

Isoelectric Point (pI)

25.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sey1_3HB	PF20428	40 - 62	6.1e-08	Sey1 three-helix bundle domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13870 AT3G13870
fragaria_vesca	FvH4_6g33350 FvH4_6g33350 FvH4_6g33350 FvH4_6g33350
malus_domestica	MD09G1193400.v1.1 MD17G1174200.v1.1
prunus_persica	Prupe.3G049800_v2.0.a1
pyrus_communis	pycom09g10990 pycom17g17830
rosa_chinensis	RchiOBHm_Chr2g0143201 RchiOBHm_Chr2g0169871
rosa_laevigata	RLG00000020013
rosa_multiflora	Rmu_co8092052.1_g000001 Rmu_sc0000181.1_g000004 Rmu_sc0003950.1_g000012
rosa_roxburghii	Rroxscaffold_2G00102050 Rroxscaffold_5G00359600 Rroxscaffold_7G00190950 Rroxscaffold_7G00191100
rosa_rugosa	Rorug02G0379200
rosa_samantha	Rh1BG269400 Rh2AG432000 Rh2BG440600 Rh2CG385100 Rh2CG417900 Rh2DG450800 Rh7AG446900
rosa_wichuraiana	Rw2G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AccII	CGCG	1 cut(s)	21
AciI	CCGC	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	179
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	2 cut(s)	74, 89
AflII	CTTAAG	1 cut(s)	200
AluBI	AGCT	1 cut(s)	52
AluI	AGCT	1 cut(s)	52
Alw21I	GWGCWC	1 cut(s)	33
ApoI	RAATTY	1 cut(s)	179
AspLEI	GCGC	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	38
BanI	GGYRCC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	33
BccI	CCATC	1 cut(s)	50
BceAI	ACGGC	2 cut(s)	52, 91
BfoI	RGCGCY	1 cut(s)	42
BfrI	CTTAAG	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	40
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	4 cut(s)	34, 140, 156, 166
BseDI	CCNNGG	4 cut(s)	34, 140, 156, 166
BseGI	GGATG	1 cut(s)	226
Bsh1236I	CGCG	1 cut(s)	21
BshNI	GGYRCC	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	1 cut(s)	66
BspACI	CCGC	1 cut(s)	21
BspFNI	CGCG	1 cut(s)	21
BspHI	TCATGA	2 cut(s)	183, 190
BspLI	GGNNCC	1 cut(s)	40
BspT107I	GGYRCC	1 cut(s)	38
BspTI	CTTAAG	1 cut(s)	200
BssECI	CCNNGG	4 cut(s)	34, 140, 156, 166
BssMI	GATC	1 cut(s)	66
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	2 cut(s)	140, 156
BstACI	GRCGYC	1 cut(s)	39
BstAFI	CTTAAG	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	50
BstDEI	CTNAG	1 cut(s)	98
BstDSI	CCRYGG	1 cut(s)	34
BstF5I	GGATG	1 cut(s)	226
BstFNI	CGCG	1 cut(s)	21
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	1 cut(s)	69
BstMBI	GATC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 152
BstUI	CGCG	1 cut(s)	21
BstXI	CCANNNNNNTGG	1 cut(s)	141
BtgI	CCRYGG	1 cut(s)	34
BtsCI	GGATG	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	50
CciI	TCATGA	2 cut(s)	183, 190
CfoI	GCGC	1 cut(s)	41
Csp6I	GTAC	2 cut(s)	73, 88
CviAII	CATG	3 cut(s)	8, 184, 191
CviJI	RGCY	5 cut(s)	52, 107, 130, 146, 238
CviKI_1	RGCY	5 cut(s)	52, 107, 130, 146, 238
CviQI	GTAC	2 cut(s)	73, 88
DdeI	CTNAG	1 cut(s)	98
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
Eco130I	CCWWGG	2 cut(s)	140, 156
EcoRI	GAATTC	1 cut(s)	179
EcoT14I	CCWWGG	2 cut(s)	140, 156
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
ErhI	CCWWGG	2 cut(s)	140, 156
FaeI	CATG	3 cut(s)	11, 187, 194
FaiI	YATR	3 cut(s)	9, 185, 192
FatI	CATG	3 cut(s)	7, 183, 190
FokI	GGATG	1 cut(s)	213
GlaI	GCGC	1 cut(s)	40
HaeII	RGCGCY	1 cut(s)	42
HhaI	GCGC	1 cut(s)	41
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	3 cut(s)	11, 187, 194
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HinfI	GANTC	1 cut(s)	187
HphI	GGTGA	1 cut(s)	38
Hpy188I	TCNGA	1 cut(s)	170
Hpy188III	TCNNGA	3 cut(s)	64, 184, 191
HpyCH4V	TGCA	1 cut(s)	14
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 152
HpyF3I	CTNAG	1 cut(s)	98
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	3 cut(s)	11, 187, 194
HspAI	GCGC	1 cut(s)	39
KasI	GGCGCC	1 cut(s)	38
Kzo9I	GATC	1 cut(s)	66
LpnPI	CCDG	2 cut(s)	106, 207
MalI	GATC	1 cut(s)	68
MboI	GATC	1 cut(s)	66
MfeI	CAATTG	1 cut(s)	124
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	2 cut(s)	124, 179
Mly113I	GGCGCC	1 cut(s)	39
MnlI	CCTC	5 cut(s)	52, 73, 147, 176, 240
MseI	TTAA	3 cut(s)	174, 201, 250
MspCI	CTTAAG	1 cut(s)	200
MunI	CAATTG	1 cut(s)	124
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	45, 152
NarI	GGCGCC	1 cut(s)	39
NdeII	GATC	1 cut(s)	66
NlaIII	CATG	3 cut(s)	11, 187, 194
NlaIV	GGNNCC	1 cut(s)	40
PagI	TCATGA	2 cut(s)	183, 190
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	187
PluTI	GGCGCC	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	40
RsaI	GTAC	2 cut(s)	74, 89
RsaNI	GTAC	2 cut(s)	73, 88
SaqAI	TTAA	3 cut(s)	174, 201, 250
Sau3AI	GATC	1 cut(s)	66
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	4 cut(s)	54, 63, 84, 139
SfoI	GGCGCC	1 cut(s)	40
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	2 cut(s)	124, 179
SsiI	CCGC	1 cut(s)	21
SspDI	GGCGCC	1 cut(s)	38
StyI	CCWWGG	2 cut(s)	140, 156
TaqI	TCGA	2 cut(s)	63, 69
TasI	AATT	2 cut(s)	124, 179
TfiI	GAWTC	1 cut(s)	187
Tru1I	TTAA	3 cut(s)	174, 201, 250
Tru9I	TTAA	3 cut(s)	174, 201, 250
TspDTI	ATGAA	3 cut(s)	172, 192, 200
Vha464I	CTTAAG	1 cut(s)	200
XapI	RAATTY	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.