Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0004898

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG440600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2301 bp

ATGGGCCCTCAAAGTAGTGGAAAGAGCACACTACTAAATAATTTGTTTGCTACCAACTTCAGGGAGATGGATGCTTTTAGAGGAAGGTCTCAGACAACAAAAGGTATTTGGTTGGCAAAATGTGCTGGTATTGAGCCTTGTACTCTTGTAATGGATTTGGAGGGTACAGATGGGAGAGAACGAGGAGAGGATGATACGGCATTCGAGAAGCAGAGTGCCCTCTTTGCCCTTGCTGTTTCAGATATAGTTCTCATTAACATGTGGTGCCATGATATTGGCCGTGAGCAAGCCGCAAATAAGCCTCTCCTAAAGACTGTGTTCCAGGTGATGATGCGATTGTTTAGTCCACGTAAAACAACTCTGATGTTCGTCATCCGTGATAAGACAAGGACACCTTTAGAGAATTTAGAACCGGTTCTTAGAGAAGACATTCAGAAGATATGGGACTCTGTTCCGAAGCCTGAAGCCCACAAGGATACTCCACTAAGCGAATTTTTTAATGTTGAGGTTGTTGCTCTTTCAAGTTATGAAGAAAAAGAAGAGCAATTTAAAGAGCAGGTCGCTAGCTTGAGGCAGAAATTCTTTCATTCCATTGCCCCTGGTGGACTTGCTGGAGATAGACGGGGGGTAGTTCCTGCTTCAGGGTTTTCTTTTAGTGCACAGCAGATATGGAGAGTCATCAAAGAAAACAGAGATCTTGATCTTCCTGCCCACAAGGTCATGGTGGCAACTGTACGTTGTGAAGAGATTGCCAACGAGAAGCATGCTGCTTTTGTAGGAAATGAGGAGTGGAGTCAGTTTGAGCAGGACGTTCAATTGGGCCCTATTCCTGGCTTTGGGAAGAAGCTCAGTTCAATCATTGATATGTGTCTATCAGGGTATGATGAAGAAGCTACATACTTTGATGAAGGTGTCAGATCTGGGAAGCGCAAGCAGCTTGAAGAAAAATTGCTTCAACATGTCCAACCTGCATTCCAAGCTTTGCTGGGACACTTAAGATCTGGTACTCTGGATAAGTTCAAGGAAGCATTTGATAAGGCCTTGGATGGCGGGCAGGGTTTTTCTGTGGCTGCGCATAATTGCAGTGAATCTTTCATGGCTCAATTTGATGAAGGATGTGCAGATGCTGTTATCCAACAAGCAGATTGGGACACATCTAAAGTAAGAGATAAACTTAAACGTGATATAGATGCTCACATTGCTTCAGTTCGTGATGCTAAGCTATCTGAAATTAAGACCCTTTATGAGGCAAAATTGAAGGAGGCCCTGTCTGGACCCGTGGAAGCGCTACTTGATGGAGCTAATAGTGAGACTTGGCCTGCAATAAGGAAACTTTTCAAGCACGAGACTGAATCAGCTGTCTCTGGGTTCTCTAGTGCACTTTCTGGTTTTGATATGGATAAACAAACCAAGGATAAAATTCTTGCAAGTCTAGAGGCATATTCAAGAGGTGTAGTGGAAGCAAAAACAAAGGAAGAGGCTGGAAGGGTTTTGATCCGTATGAAGGACAGGTTTGCAACACTATTTAGCCACGACTCTGATTCGATGCCACGTGTGTGGACTGGGAAGGAAGACATCAGAGCAATTACCAAGACTGCTCGTTCTGCATCCCTGAAATTGCTTTCTGTTATGGCTGCAATTCGGTTGGATGATGGTGATGCTGATAATATTGAGAAAACTTTATCTCTTGCCTTGGTGGATGGCAGAAATGCTGCTCCCAAAGATAAGAGTATCACAACGGTTGACCCATTGGCCTCTAGCACTTGGCAAGAGGTTTCATCATCAAAGACATTGATCACACCTGTACAGTGCAAATCTTTGTGGAAGCAATTCAAGTCAGAGACTGAGTACAGTGTTTCGCAGGCTATTGCTGCCCAGGAAGCCAACAAGCGTAATAACAATTGGCTACCACCTCCTTGGGCTATTCTTGCCTTGGTTGTCCTCGGATTTAATGAATTCATGACACTCTTAAGAAATCCTTTGTATCTGCTGGTCATCTTTGTTGGCTTTTTACTCCTTAAAGCACTATGGGTGCAGCTAGACATCTCGGCTGAATTCCGCAATGGCGCTCTTCCGGGACTTCTCTCTTTGTCCACCAAGTTGGTGCCAACTATCATGAACATGATGAAGAGATTAGCAGATGAAGGGGCAGCAGCTGCTGCAGATAACAATCCTCAAAGAAACCCTGCAGTAGCATCAAAAGGCATAAGCAATGGAGCAAATGCTAGCAGTTCCATGTCAACTTCTGCCTCGTCGGGAGTGACAGAATCTGAATACTCTAGTCCTTTGAAACAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006810 GO:0006888 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009832 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0017076 GO:0019001 GO:0022622 GO:0030029 GO:0030036 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032989 GO:0035639 GO:0036094 GO:0040007 GO:0042546 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060560 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0090558 GO:0090627 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0099402 GO:1901265 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RHD3

Protein Analysis

766

Amino Acids

84.61

Weight (kDa)

5.86

Isoelectric Point (pI)

37.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RHD3_GTPase	PF05879	1 - 236	3e-117	Root hair defective 3 GTP-binding protein (RHD3) GTPase domain
Sey1_3HB	PF20428	278 - 715	6.3e-151	Sey1 three-helix bundle domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13870 AT3G13870
fragaria_vesca	FvH4_6g33350 FvH4_6g33350 FvH4_6g33350 FvH4_6g33350
malus_domestica	MD09G1193400.v1.1 MD17G1174200.v1.1
prunus_persica	Prupe.3G049800_v2.0.a1
pyrus_communis	pycom09g10990 pycom17g17830
rosa_chinensis	RchiOBHm_Chr2g0143201 RchiOBHm_Chr2g0169871
rosa_laevigata	RLG00000020013
rosa_multiflora	Rmu_co8092052.1_g000001 Rmu_sc0000181.1_g000004 Rmu_sc0003950.1_g000012
rosa_roxburghii	Rroxscaffold_2G00102050 Rroxscaffold_5G00359600 Rroxscaffold_7G00190950 Rroxscaffold_7G00191100
rosa_rugosa	Rorug02G0379200
rosa_samantha	Rh1BG269400 Rh2AG432000 Rh2BG440600 Rh2CG385100 Rh2CG417900 Rh2DG450800 Rh7AG446900
rosa_wichuraiana	Rw2G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1074
Acc36I	ACCTGC	2 cut(s)	547, 976
AccB1I	GGYRCC	2 cut(s)	264, 2104
AciI	CCGC	3 cut(s)	291, 1050, 2059
AclWI	GGATC	1 cut(s)	1489
AcoI	YGGCCR	1 cut(s)	277
AcsI	RAATTY	6 cut(s)	403, 491, 578, 1419, 1955, 2054
AcuI	CTGAAG	4 cut(s)	43, 483, 624, 1188
AcvI	CACGTG	1 cut(s)	1553
AfaI	GTAC	6 cut(s)	142, 166, 735, 1006, 1806, 1850
AfeI	AGCGCT	1 cut(s)	1287
AfiI	CCNNNNNNNGG	6 cut(s)	60, 641, 830, 836, 1246, 1504
AflII	CTTAAG	2 cut(s)	994, 1969
AflIII	ACRYGT	3 cut(s)	258, 958, 1552
AgeI	ACCGGT	1 cut(s)	412
AjnI	CCWGG	4 cut(s)	321, 598, 829, 1875
AleI	CACNNNNGTG	1 cut(s)	1555
Alw21I	GWGCWC	3 cut(s)	29, 661, 1381
Alw26I	GTCTC	5 cut(s)	93, 1304, 1340, 1366, 1835
Alw44I	GTGCAC	2 cut(s)	657, 1377
AlwI	GGATC	1 cut(s)	1489
AlwNI	CAGNNNCTG	5 cut(s)	1127, 1844, 2156, 2159, 2270
Aor51HI	AGCGCT	1 cut(s)	1287
AoxI	GGCC	7 cut(s)	4, 277, 820, 1038, 1263, 1316, 1752
ApaI	GGGCCC	2 cut(s)	8, 824
ApaLI	GTGCAC	2 cut(s)	657, 1377
ApoI	RAATTY	6 cut(s)	403, 491, 578, 1419, 1955, 2054
AsiGI	ACCGGT	1 cut(s)	412
Asp700I	GAANNNNTTC	4 cut(s)	414, 429, 1334, 1829
AspLEI	GCGC	4 cut(s)	930, 1075, 1288, 2069
AspS9I	GGNCC	6 cut(s)	4, 5, 820, 821, 1264, 1274
AsuC2I	CCSGG	1 cut(s)	2076
AsuHPI	GGTGA	2 cut(s)	337, 1667
AsuNHI	GCTAGC	2 cut(s)	563, 2225
AvaII	GGWCC	1 cut(s)	1274
BaeGI	GKGCMC	5 cut(s)	8, 220, 661, 824, 1381
BanI	GGYRCC	2 cut(s)	264, 2104
BanII	GRGCYC	2 cut(s)	8, 824
BauI	CACGAG	1 cut(s)	1343
BbrPI	CACGTG	1 cut(s)	1553
BbsI	GAAGAC	2 cut(s)	432, 1578
Bbv12I	GWGCWC	3 cut(s)	29, 661, 1381
BccI	CCATC	6 cut(s)	61, 164, 1040, 1289, 1646, 1694
BceAI	ACGGC	2 cut(s)	213, 264
BcgI	CGANNNNNNTGC	2 cut(s)	746, 780
BciT130I	CCWGG	4 cut(s)	323, 600, 831, 1877
BciVI	GTATCC	1 cut(s)	469
BclI	TGATCA	1 cut(s)	1794
BcnI	CCSGG	1 cut(s)	2076
BcoDI	GTCTC	5 cut(s)	93, 1304, 1340, 1366, 1835
BfaI	CTAG	7 cut(s)	564, 1374, 1433, 1758, 2039, 2226, 2280
BfmI	CTRYAG	2 cut(s)	2160, 2187
BfoI	RGCGCY	2 cut(s)	1289, 2070
BfrI	CTTAAG	2 cut(s)	994, 1969
BfuAI	ACCTGC	2 cut(s)	547, 976
BfuI	GTATCC	1 cut(s)	469
BglII	AGATCT	3 cut(s)	694, 917, 998
BlpI	GCTNAGC	1 cut(s)	1218
Bme1390I	CCNGG	5 cut(s)	323, 600, 831, 1877, 2076
Bme18I	GGWCC	1 cut(s)	1274
BmgT120I	GGNCC	6 cut(s)	4, 5, 820, 821, 1264, 1274
BmiI	GGNNCC	5 cut(s)	6, 266, 822, 1276, 2106
BmrFI	CCNGG	5 cut(s)	323, 600, 831, 1877, 2076
BmrI	ACTGGG	1 cut(s)	1572
BmsI	GCATC	9 cut(s)	61, 321, 1114, 1180, 1204, 1536, 1616, 1648, 2204
BmtI	GCTAGC	2 cut(s)	567, 2229
BmuI	ACTGGG	1 cut(s)	1572
BpiI	GAAGAC	2 cut(s)	432, 1578
BpmI	CTGGAG	1 cut(s)	633
Bpu1102I	GCTNAGC	1 cut(s)	1218
BpuEI	CTTGAG	1 cut(s)	589
BpuMI	CCSGG	1 cut(s)	2076
BsaAI	YACGTR	2 cut(s)	350, 1553
BsaBI	GATNNNNATC	2 cut(s)	699, 2169
BsaI	GGTCTC	1 cut(s)	93
BsaJI	CCNNGG	9 cut(s)	598, 1041, 1278, 1410, 1692, 1875, 1916, 1932, 1942
BsaWI	WCCGGW	1 cut(s)	412
BsaXI	ACNNNNNCTCC	2 cut(s)	1253, 1283
Bsc4I	CCNNNNNNNGG	6 cut(s)	60, 641, 830, 836, 1246, 1504
Bse118I	RCCGGY	1 cut(s)	412
Bse1I	ACTGG	1 cut(s)	1567
Bse3DI	GCAATG	4 cut(s)	591, 1197, 2068, 2218
Bse8I	GATNNNNATC	2 cut(s)	699, 2169
BseBI	CCWGG	4 cut(s)	323, 600, 831, 1877
BseDI	CCNNGG	9 cut(s)	598, 1041, 1278, 1410, 1692, 1875, 1916, 1932, 1942
BseGI	GGATG	8 cut(s)	76, 196, 372, 1051, 1121, 1607, 1654, 1705
BseJI	GATNNNNATC	2 cut(s)	699, 2169
BseLI	CCNNNNNNNGG	6 cut(s)	60, 641, 830, 836, 1246, 1504
BseMI	GCAATG	4 cut(s)	591, 1197, 2068, 2218
BseMII	CTCAG	3 cut(s)	104, 862, 1836
BseNI	ACTGG	1 cut(s)	1567
BseRI	GAGGAG	2 cut(s)	198, 800
BseSI	GKGCMC	5 cut(s)	8, 220, 661, 824, 1381
BseYI	CCCAGC	1 cut(s)	985
BsgI	GTGCAG	2 cut(s)	1140, 2054
BshFI	GGCC	7 cut(s)	6, 279, 822, 1040, 1265, 1318, 1754
BshNI	GGYRCC	2 cut(s)	264, 2104
BshTI	ACCGGT	1 cut(s)	412
BsiHKAI	GWGCWC	3 cut(s)	29, 661, 1381
BsiSI	CCGG	2 cut(s)	413, 2075
BslFI	GGGAC	4 cut(s)	458, 1002, 1163, 2091
BslI	CCNNNNNNNGG	6 cut(s)	60, 641, 830, 836, 1246, 1504
BsmAI	GTCTC	5 cut(s)	93, 1304, 1340, 1366, 1835
BsmFI	GGGAC	4 cut(s)	458, 1002, 1163, 2091
BsmI	GAATGC	2 cut(s)	200, 971
BsnI	GGCC	7 cut(s)	6, 279, 822, 1040, 1265, 1318, 1754
Bso31I	GGTCTC	1 cut(s)	93
Bsp120I	GGGCCC	2 cut(s)	4, 820
Bsp1286I	GDGCHC	6 cut(s)	8, 29, 220, 661, 824, 1381
Bsp1407I	TGTACA	1 cut(s)	1804
Bsp143I	GATC	6 cut(s)	694, 700, 917, 998, 1494, 1794
Bsp1720I	GCTNAGC	1 cut(s)	1218
BspACI	CCGC	3 cut(s)	291, 1050, 2059
BspANI	GGCC	7 cut(s)	6, 279, 822, 1040, 1265, 1318, 1754
BspCNI	CTCAG	3 cut(s)	103, 861, 1837
BspHI	TCATGA	2 cut(s)	1959, 2115
BspLI	GGNNCC	5 cut(s)	6, 266, 822, 1276, 2106
BspMAI	CTGCAG	2 cut(s)	2164, 2191
BspMI	ACCTGC	2 cut(s)	547, 976
BspOI	GCTAGC	2 cut(s)	567, 2229
BspPI	GGATC	1 cut(s)	1489
BspQI	GCTCTTC	2 cut(s)	534, 2076
BspT107I	GGYRCC	2 cut(s)	264, 2104
BspTI	CTTAAG	2 cut(s)	994, 1969
BspTNI	GGTCTC	1 cut(s)	93
BsrDI	GCAATG	4 cut(s)	591, 1197, 2068, 2218
BsrFI	RCCGGY	1 cut(s)	412
BsrGI	TGTACA	1 cut(s)	1804
BsrI	ACTGG	1 cut(s)	1567
BssAI	RCCGGY	1 cut(s)	412
BssECI	CCNNGG	9 cut(s)	598, 1041, 1278, 1410, 1692, 1875, 1916, 1932, 1942
BssMI	GATC	6 cut(s)	694, 700, 917, 998, 1494, 1794
BssSI	CACGAG	1 cut(s)	1343
BssT1I	CCWWGG	5 cut(s)	1041, 1410, 1692, 1916, 1932
Bst2BI	CACGAG	1 cut(s)	1343
Bst2UI	CCWGG	4 cut(s)	323, 600, 831, 1877
Bst4CI	ACNGT	5 cut(s)	316, 733, 1741, 1809, 1853
Bst6I	CTCTTC	5 cut(s)	534, 738, 1470, 2076, 2123
BstAFI	CTTAAG	2 cut(s)	994, 1969
BstAPI	GCANNNNNTGC	3 cut(s)	122, 2156, 2159
BstAUI	TGTACA	1 cut(s)	1804
BstBAI	YACGTR	2 cut(s)	350, 1553
BstC8I	GCNNGC	8 cut(s)	288, 565, 765, 932, 1052, 1320, 1863, 2227
BstDEI	CTNAG	6 cut(s)	90, 419, 485, 848, 1218, 1845
BstDSI	CCRYGG	1 cut(s)	1278
BstENI	CCTNNNNNAGG	2 cut(s)	639, 1244
BstF5I	GGATG	8 cut(s)	76, 196, 372, 1051, 1121, 1607, 1654, 1705
BstH2I	RGCGCY	2 cut(s)	1289, 2070
BstHHI	GCGC	4 cut(s)	930, 1075, 1288, 2069
BstKTI	GATC	6 cut(s)	697, 703, 920, 1001, 1497, 1797
BstMAI	GTCTC	5 cut(s)	93, 1304, 1340, 1366, 1835
BstMBI	GATC	6 cut(s)	694, 700, 917, 998, 1494, 1794
BstNI	CCWGG	4 cut(s)	323, 600, 831, 1877
BstNSI	RCATGY	3 cut(s)	262, 767, 962
BstSCI	CCNGG	5 cut(s)	321, 598, 829, 1875, 2074
BstSFI	CTRYAG	2 cut(s)	2160, 2187
BstSLI	GKGCMC	5 cut(s)	8, 220, 661, 824, 1381
BstV2I	GAAGAC	2 cut(s)	432, 1578
BstX2I	RGATCY	3 cut(s)	694, 917, 998
BstXI	CCANNNNNNTGG	4 cut(s)	275, 1557, 1917, 2101
BstYI	RGATCY	3 cut(s)	694, 917, 998
BsuI	GTATCC	1 cut(s)	469
BsuRI	GGCC	7 cut(s)	6, 279, 822, 1040, 1265, 1318, 1754
BtgI	CCRYGG	1 cut(s)	1278
BtsCI	GGATG	8 cut(s)	76, 196, 372, 1051, 1121, 1607, 1654, 1705
BtsI	GCAGTG	1 cut(s)	1090
BtsIMutI	CAGTG	3 cut(s)	1090, 1814, 1858
BveI	ACCTGC	2 cut(s)	547, 976
Cac8I	GCNNGC	8 cut(s)	288, 565, 765, 932, 1052, 1320, 1863, 2227
CaiI	CAGNNNCTG	5 cut(s)	1127, 1844, 2156, 2159, 2270
CciI	TCATGA	2 cut(s)	1959, 2115
CfoI	GCGC	4 cut(s)	930, 1075, 1288, 2069
Cfr10I	RCCGGY	1 cut(s)	412
Cfr13I	GGNCC	6 cut(s)	4, 5, 820, 821, 1264, 1274
Csp6I	GTAC	6 cut(s)	141, 165, 734, 1005, 1805, 1849
CspAI	ACCGGT	1 cut(s)	412
CviQI	GTAC	6 cut(s)	141, 165, 734, 1005, 1805, 1849
DdeI	CTNAG	6 cut(s)	90, 419, 485, 848, 1218, 1845
DpnI	GATC	6 cut(s)	696, 702, 919, 1000, 1496, 1796
DpnII	GATC	6 cut(s)	694, 700, 917, 998, 1494, 1794
DraI	TTTAAA	1 cut(s)	550
EaeI	YGGCCR	1 cut(s)	277
Eam1104I	CTCTTC	5 cut(s)	534, 738, 1470, 2076, 2123
EarI	CTCTTC	5 cut(s)	534, 738, 1470, 2076, 2123
Eco130I	CCWWGG	5 cut(s)	1041, 1410, 1692, 1916, 1932
Eco147I	AGGCCT	1 cut(s)	1040
Eco24I	GRGCYC	2 cut(s)	8, 824
Eco31I	GGTCTC	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	1274
Eco47III	AGCGCT	1 cut(s)	1287
Eco57I	CTGAAG	4 cut(s)	43, 483, 624, 1188
Eco72I	CACGTG	1 cut(s)	1553
EcoNI	CCTNNNNNAGG	2 cut(s)	639, 1244
EcoO109I	RGGNCCY	3 cut(s)	5, 821, 1264
EcoRI	GAATTC	2 cut(s)	1955, 2054
EcoRII	CCWGG	4 cut(s)	321, 598, 829, 1875
EcoT14I	CCWWGG	5 cut(s)	1041, 1410, 1692, 1916, 1932
EcoT38I	GRGCYC	2 cut(s)	8, 824
ErhI	CCWWGG	5 cut(s)	1041, 1410, 1692, 1916, 1932
FalI	AAGNNNNNCTT	6 cut(s)	379, 411, 1275, 1307, 1963, 1995
FaqI	GGGAC	4 cut(s)	458, 1002, 1163, 2091
FauI	CCCGC	1 cut(s)	1043
FbaI	TGATCA	1 cut(s)	1794
FokI	GGATG	8 cut(s)	83, 203, 359, 1058, 1128, 1594, 1661, 1712
FriOI	GRGCYC	2 cut(s)	8, 824
FspBI	CTAG	7 cut(s)	564, 1374, 1433, 1758, 2039, 2226, 2280
FspI	TGCGCA	1 cut(s)	1074
GlaI	GCGC	4 cut(s)	929, 1074, 1287, 2068
GsaI	CCCAGC	1 cut(s)	989
GsuI	CTGGAG	1 cut(s)	633
HaeII	RGCGCY	2 cut(s)	1289, 2070
HaeIII	GGCC	7 cut(s)	6, 279, 822, 1040, 1265, 1318, 1754
HapII	CCGG	2 cut(s)	413, 2075
HhaI	GCGC	4 cut(s)	930, 1075, 1288, 2069
Hin6I	GCGC	4 cut(s)	928, 1073, 1286, 2067
HinP1I	GCGC	4 cut(s)	928, 1073, 1286, 2067
HincII	GTYRAC	2 cut(s)	1744, 2241
HindII	GTYRAC	2 cut(s)	1744, 2241
HindIII	AAGCTT	1 cut(s)	978
HinfI	GANTC	8 cut(s)	446, 675, 793, 1088, 1352, 1535, 1541, 2267
HpaII	CCGG	2 cut(s)	413, 2075
HphI	GGTGA	2 cut(s)	337, 1667
Hpy166II	GTNNAC	8 cut(s)	347, 605, 659, 1379, 1560, 1744, 2094, 2241
Hpy8I	GTNNAC	8 cut(s)	347, 605, 659, 1379, 1560, 1744, 2094, 2241
Hpy99I	CGWCG	1 cut(s)	2257
HpyAV	CCTTC	8 cut(s)	78, 902, 1106, 1252, 1479, 1498, 1561, 2138
HpyCH4III	ACNGT	5 cut(s)	316, 733, 1741, 1809, 1853
HpyCH4IV	ACGT	5 cut(s)	349, 736, 810, 1180, 1552
HpyF3I	CTNAG	6 cut(s)	90, 419, 485, 848, 1218, 1845
HpySE526I	ACGT	5 cut(s)	349, 736, 810, 1180, 1552
HspAI	GCGC	4 cut(s)	928, 1073, 1286, 2067
Ksp22I	TGATCA	1 cut(s)	1794
Kzo9I	GATC	6 cut(s)	694, 700, 917, 998, 1494, 1794
LguI	GCTCTTC	2 cut(s)	534, 2076
LmnI	GCTCC	3 cut(s)	1298, 1720, 2216
LweI	GCATC	9 cut(s)	61, 321, 1114, 1180, 1204, 1536, 1616, 1648, 2204
MaeI	CTAG	7 cut(s)	564, 1374, 1433, 1758, 2039, 2226, 2280
MaeII	ACGT	5 cut(s)	349, 736, 810, 1180, 1552
MaeIII	GTNAC	1 cut(s)	2260
MalI	GATC	6 cut(s)	696, 702, 919, 1000, 1496, 1796
MboI	GATC	6 cut(s)	694, 700, 917, 998, 1494, 1794
MfeI	CAATTG	2 cut(s)	815, 1900
MflI	RGATCY	3 cut(s)	694, 917, 998
MhlI	GDGCHC	6 cut(s)	8, 29, 220, 661, 824, 1381
MlyI	GAGTC	4 cut(s)	440, 684, 802, 1529
MmeI	TCCRAC	3 cut(s)	988, 1159, 1626
MroXI	GAANNNNTTC	4 cut(s)	414, 429, 1334, 1829
MseI	TTAA	9 cut(s)	255, 498, 549, 995, 1176, 1233, 1950, 1970, 2019
MslI	CAYNNNNRTG	4 cut(s)	257, 863, 1555, 2120
MspA1I	CMGCKG	2 cut(s)	1358, 2156
MspCI	CTTAAG	2 cut(s)	994, 1969
MspI	CCGG	2 cut(s)	413, 2075
MspR9I	CCNGG	5 cut(s)	323, 600, 831, 1877, 2076
MunI	CAATTG	2 cut(s)	815, 1900
Mva1269I	GAATGC	2 cut(s)	200, 971
MvaI	CCWGG	4 cut(s)	323, 600, 831, 1877
NciI	CCSGG	1 cut(s)	2076
NdeII	GATC	6 cut(s)	694, 700, 917, 998, 1494, 1794
NheI	GCTAGC	2 cut(s)	563, 2225
NlaIV	GGNNCC	5 cut(s)	6, 266, 822, 1276, 2106
NmeAIII	GCCGAG	1 cut(s)	2027
NmuCI	GTSAC	1 cut(s)	2260
NsbI	TGCGCA	1 cut(s)	1074
NspI	RCATGY	3 cut(s)	262, 767, 962
OliI	CACNNNNGTG	1 cut(s)	1555
PaeI	GCATGC	1 cut(s)	767
PagI	TCATGA	2 cut(s)	1959, 2115
PceI	AGGCCT	1 cut(s)	1040
PciI	ACATGT	2 cut(s)	258, 958
PciSI	GCTCTTC	2 cut(s)	534, 2076
PctI	GAATGC	2 cut(s)	200, 971
PdmI	GAANNNNTTC	4 cut(s)	414, 429, 1334, 1829
PfeI	GAWTC	4 cut(s)	1088, 1352, 1541, 2267
PfoI	TCCNGGA	1 cut(s)	2074
PinAI	ACCGGT	1 cut(s)	412
PleI	GAGTC	4 cut(s)	440, 683, 801, 1529
PmaCI	CACGTG	1 cut(s)	1553
PmlI	CACGTG	1 cut(s)	1553
PpsI	GAGTC	4 cut(s)	440, 683, 801, 1529
Ppu21I	YACGTR	2 cut(s)	350, 1553
PscI	ACATGT	2 cut(s)	258, 958
Psp6I	CCWGG	4 cut(s)	321, 598, 829, 1875
PspCI	CACGTG	1 cut(s)	1553
PspFI	CCCAGC	1 cut(s)	985
PspGI	CCWGG	4 cut(s)	321, 598, 829, 1875
PspN4I	GGNNCC	5 cut(s)	6, 266, 822, 1276, 2106
PspOMI	GGGCCC	2 cut(s)	4, 820
PspPI	GGNCC	6 cut(s)	4, 5, 820, 821, 1264, 1274
PstI	CTGCAG	2 cut(s)	2164, 2191
PstNI	CAGNNNCTG	5 cut(s)	1127, 1844, 2156, 2159, 2270
PsuI	RGATCY	3 cut(s)	694, 917, 998
PvuII	CAGCTG	2 cut(s)	1358, 2156
RsaI	GTAC	6 cut(s)	142, 166, 735, 1006, 1806, 1850
RsaNI	GTAC	6 cut(s)	141, 165, 734, 1005, 1805, 1849
RseI	CAYNNNNRTG	4 cut(s)	257, 863, 1555, 2120
SapI	GCTCTTC	2 cut(s)	534, 2076
SaqAI	TTAA	9 cut(s)	255, 498, 549, 995, 1176, 1233, 1950, 1970, 2019
Sau3AI	GATC	6 cut(s)	694, 700, 917, 998, 1494, 1794
Sau96I	GGNCC	6 cut(s)	4, 5, 820, 821, 1264, 1274
SchI	GAGTC	4 cut(s)	440, 684, 802, 1529
ScrFI	CCNGG	5 cut(s)	323, 600, 831, 1877, 2076
SduI	GDGCHC	6 cut(s)	8, 29, 220, 661, 824, 1381
SfaNI	GCATC	9 cut(s)	61, 321, 1114, 1180, 1204, 1536, 1616, 1648, 2204
SfcI	CTRYAG	2 cut(s)	2160, 2187
SinI	GGWCC	1 cut(s)	1274
SmiMI	CAYNNNNRTG	4 cut(s)	257, 863, 1555, 2120
SmlI	CTYRAG	3 cut(s)	568, 994, 1969
SmoI	CTYRAG	3 cut(s)	568, 994, 1969
SphI	GCATGC	1 cut(s)	767
SseBI	AGGCCT	1 cut(s)	1040
SsiI	CCGC	3 cut(s)	291, 1050, 2059
SspI	AATATT	1 cut(s)	1669
SspMI	CTAG	7 cut(s)	564, 1374, 1433, 1758, 2039, 2226, 2280
StuI	AGGCCT	1 cut(s)	1040
StyD4I	CCNGG	5 cut(s)	321, 598, 829, 1875, 2074
StyI	CCWWGG	5 cut(s)	1041, 1410, 1692, 1916, 1932
TaaI	ACNGT	5 cut(s)	316, 733, 1741, 1809, 1853
TaiI	ACGT	5 cut(s)	352, 739, 813, 1183, 1555
TaqI	TCGA	2 cut(s)	204, 1544
TatI	WGTACW	3 cut(s)	140, 1804, 1848
TauI	GCSGC	1 cut(s)	293
TfiI	GAWTC	4 cut(s)	1088, 1352, 1541, 2267
Tru1I	TTAA	9 cut(s)	255, 498, 549, 995, 1176, 1233, 1950, 1970, 2019
Tru9I	TTAA	9 cut(s)	255, 498, 549, 995, 1176, 1233, 1950, 1970, 2019
TscAI	CASTG	3 cut(s)	1090, 1814, 1858
TseFI	GTSAC	1 cut(s)	2260
Tsp45I	GTSAC	1 cut(s)	2260
TspGWI	ACGGA	2 cut(s)	365, 1487
TspRI	CASTG	3 cut(s)	1090, 1814, 1858
Vha464I	CTTAAG	2 cut(s)	994, 1969
VneI	GTGCAC	2 cut(s)	657, 1377
VpaK11BI	GGWCC	1 cut(s)	1274
XagI	CCTNNNNNAGG	2 cut(s)	639, 1244
XapI	RAATTY	6 cut(s)	403, 491, 578, 1419, 1955, 2054
XbaI	TCTAGA	1 cut(s)	1432
XceI	RCATGY	3 cut(s)	262, 767, 962
XmnI	GAANNNNTTC	4 cut(s)	414, 429, 1334, 1829
XspI	CTAG	7 cut(s)	564, 1374, 1433, 1758, 2039, 2226, 2280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.