Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0004898

Physical Location & Seq

Genomic Coordinates Reverse (-)

9129503 .. 9139697

Gene Structure 10195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g10990.21

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2655 bp

ATGAGGGAATTTAAAAAAAAAAAAAAAAGGAACAAAAGAAAGTCACGCACGCCCCTTTTTAAAGAACAAAAGCTCAAACTCTCTCTCCTCTGCGATCGCTTGCGCTTTCTCTCTCCCTCTCTTCTCTCTGCTCCTAACCGATCTCTTTCTCTCAATCTCGCACACATTTTGAAGCCCGTCATCTCAAGCTCTTCGAGGCCAATCTCGCCCGAAAATGGACTTGCAGATCAGTCACACTCTCATCCAGCAAAAAGTGAGGAGTGCTGCTCTACTCAGCTTCTTGACGGGGATGGTACATTCAATGTCACTGGAATTGATCAGTTTATTAAGGAGGCAAAATTGGCTGAATGCGGACTTTCTTATGCCGTTGTCTCCATTATGGGACCACAAAGTAGTGGAAAGAGCACATTGTTAAATCATTTATTTGCTACCAACTTTCGCGAGATGGATGCTTTTAGAGGAAGGTCGCAAACAACCAAAGGTATTTGGGTTGCAAAATGCGCCGGCATTGAGCCTTGCACTCTTGTAATGGATTTAGAGGGTACCGATGGAAGAGAACGAGGAGAGGATGATACTGCATTTGAGAAGCAGAGTGCCCTCTTTGCTCTTGCTGTTTCAGATATAGTGCTCATAAACATGTGGTGCCATGATATAGGCCGTGAGCAAGCTGCAAACAAGCCTCTCCTGAAGACTGTGTTCCAAGTGATGATGCGATTATTTAGTCCGCGTAAAACAACCCTGATGTTTGTCATCCGTGATAAGACAAGGACGCCGTTGGAAAATTTAGAACCAGTGCTTAGAGAAGACATTCAGAAGATATGGGACTCTGTTCCTAAGCCTGAAGCCCACAAGGAAACTCCGCTAAGTGAATTTTTTAATGTTGAGGTTGTTGCTCTTTCAAGTTATGAAGAAAAGGAAGAGCAATTTAAGGAGCAGGTTGCTAGCTTGAGGCAGAGATTTTATCATTCTATTGCACCTGGTGGTCTTGCTGGAGACCGACGGGGAGTAGTTCCTGCTTCAGGGTTTTCTTTTAGTGCACAGCAGATATGGAAAGTCATCAAAGAAAACAAAGATCTTGATCTTCCTGCCCACAAGGTCATGGTGGCTACTGTACGTTGTGAAGAAATTGCAAATGAGAAGTATGCTGCTTTTGCAGGAAATGAGGAGTGGAGTGAGTTGGATGAGGCTGTTCAGTCCGGTCCTATTTCTGGCTTTGGGAAGAAGCTCAATTCAATCCTTGATACTTATCTATCAGAGTATGATGCAGAGGCTATATATTTTGATGAGGGTGTCAGAACTGGGAAGCGCCAGCAGCTCGAAGAAAAATTGCTGCAACTTGTCCAACCTGCGTTCCAAGCTTTACTGGGACATATAAGATCTGGTACTCTGGATAAGTTCAAGGAAGCATTTGATAAGGCTTTGAAAGGAGGGGAGGGATTTTCAGCGGCTGCTCATAATTGCTCTCAGTCCTTTATGGCTCTGTTTGATGAAGGATGTGCAGATGCTGTTATCACACTAGCAAACTGGGACACATCAAAAGTAAGGGATAAACTTAAACGAGATATAGAAGCCCATATTGCTTCAGTTCGTGCTGCTAAGCTATCTGAACTTACTGCACTTTATGAGTCAAAATTGAAGGATGCATTATCAGCACCAGTAGAGGCTCTTCTAGATGGAGCTAATAGTGAGACCTGGCCTTCAATAAGAAAACTTTTCCGGCGTGAGACAGAATCAGCTGTCTCCGGGCTCTCTAGTGCACTTTCTGGTTTTGATATGGATGAAGAAGCTAAGGGCCAAATACTTGCAAATCTGGAGGCTTATGCAAGAGGTGTGGTAGAAGCTAAAACAAAGGAAGAGGCTGGAAGGGTTTTGATTCGTATGAAGGACAGGTTTGCAACGTTATTTAGCCATGATTCTGATTCAATGCCACGTGTCTGGACTGGGAAGGAAGATATTAGATCAATTACCAAAACTGCTCGTTCTGCATCCTTAAAATTGCTTTCTGTTATGGCTGCAATCCGTTTGGATGATGAGGGCGCTGATAATATTGAGAATACTTTGTCCCTTGCCTTGGTGGATTCCACAAATGCTGCTGTTAAAGATCGGAGTATCACGACCGCTGACCCACTGGCTTCAAGCACTTGGCAAGAGATTTCAGCATCAAAAACATTGATCACACCTGTCCAGTGCAAATCTTTGTGGCGGCAATTCAAGGCAGAGACTGAATACAGTGTTTCTCAGGCTATTTCTGCACAGGAAGCTAACAAGCGTAATAACAACTGGTTGCCACCTCCGTGGGCTATTGTTGCCTTGATTGTGCTGGGATTCAATGAATTTATGACACTTTTAAGAAATCCTTTCTATCTGTGCGTCATCTTTGTGGCCTTTTTACTCGTTAAAGCCCTATGGGTGCAGCTAGACGTCGCCGGTGAATTCCGCAATGGTGCTCTTCCCGGGCTTCTATCCTTGTCGACCAAGGTGGTACCAACTATCATGAACATGATGAAAAGACTAGCAGAAGAAGGGGCAAAGCCTGCAGCTAATGATCCTCCGAGGAACCCTGCACCAGCATCAACGGGCTATGGGAAAGAAGGGAATTCTAGCAGTGAAATGTCATCAAGTGGCTCATCGGGAGTGACAGAATCTGACGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006810 GO:0006888 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009832 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0017076 GO:0019001 GO:0022622 GO:0030029 GO:0030036 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032989 GO:0035639 GO:0036094 GO:0040007 GO:0042546 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060560 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0090558 GO:0090627 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0099402 GO:1901265 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RHD3

Protein Analysis

885

Amino Acids

97.58

Weight (kDa)

6.41

Isoelectric Point (pI)

43.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13870 AT3G13870
fragaria_vesca	FvH4_6g33350 FvH4_6g33350 FvH4_6g33350 FvH4_6g33350
malus_domestica	MD09G1193400.v1.1 MD17G1174200.v1.1
prunus_persica	Prupe.3G049800_v2.0.a1
pyrus_communis	pycom09g10990 pycom17g17830
rosa_chinensis	RchiOBHm_Chr2g0143201 RchiOBHm_Chr2g0169871
rosa_laevigata	RLG00000020013
rosa_multiflora	Rmu_co8092052.1_g000001 Rmu_sc0000181.1_g000004 Rmu_sc0003950.1_g000012
rosa_roxburghii	Rroxscaffold_2G00102050 Rroxscaffold_5G00359600 Rroxscaffold_7G00190950 Rroxscaffold_7G00191100
rosa_rugosa	Rorug02G0379200
rosa_samantha	Rh1BG269400 Rh2AG432000 Rh2BG440600 Rh2CG385100 Rh2CG417900 Rh2DG450800 Rh7AG446900
rosa_wichuraiana	Rw2G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	2424
Acc36I	ACCTGC	2 cut(s)	925, 1354
Acc65I	GGTACC	2 cut(s)	542, 2482
AccB1I	GGYRCC	3 cut(s)	542, 642, 2482
AccI	GTMKAC	1 cut(s)	2471
AccII	CGCG	2 cut(s)	441, 727
AciI	CCGC	7 cut(s)	351, 725, 860, 1445, 2118, 2203, 2437
AclI	AACGTT	1 cut(s)	1898
AclWI	GGATC	1 cut(s)	2540
AcsI	RAATTY	6 cut(s)	8, 781, 869, 2333, 2432, 2596
AcuI	CTGAAG	4 cut(s)	707, 861, 1002, 1566
AcvI	CACGTG	1 cut(s)	1931
AcyI	GRCGYC	2 cut(s)	770, 2421
AdeI	CACNNNGTG	1 cut(s)	980
AfaI	GTAC	5 cut(s)	295, 544, 1113, 1384, 2484
AfiI	CCNNNNNNNGG	4 cut(s)	215, 1019, 1208, 2071
AflIII	ACRYGT	2 cut(s)	636, 1930
AjnI	CCWGG	2 cut(s)	976, 1691
AleI	CACNNNNGTG	1 cut(s)	2293
Alw21I	GWGCWC	5 cut(s)	407, 630, 1039, 1759, 2449
Alw26I	GTCTC	6 cut(s)	376, 987, 1682, 1718, 1744, 2213
Alw44I	GTGCAC	2 cut(s)	1035, 1755
AlwI	GGATC	1 cut(s)	2540
AlwNI	CAGNNNCTG	4 cut(s)	1448, 1505, 2222, 2645
Ama87I	CYCGRG	1 cut(s)	2453
AoxI	GGCC	5 cut(s)	197, 655, 1694, 1792, 2382
ApaLI	GTGCAC	2 cut(s)	1035, 1755
ApoI	RAATTY	6 cut(s)	8, 781, 869, 2333, 2432, 2596
AsiSI	GCGATCGC	1 cut(s)	97
Asp700I	GAANNNNTTC	1 cut(s)	807
Asp718I	GGTACC	2 cut(s)	542, 2482
AspLEI	GCGC	4 cut(s)	105, 503, 1308, 2039
AspS9I	GGNCC	3 cut(s)	383, 1199, 1792
AsuC2I	CCSGG	3 cut(s)	1744, 2454, 2455
AsuHPI	GGTGA	1 cut(s)	2441
AsuNHI	GCTAGC	1 cut(s)	941
AvaI	CYCGRG	1 cut(s)	2453
AvaII	GGWCC	2 cut(s)	383, 1199
BaeGI	GKGCMC	3 cut(s)	598, 1039, 1759
BanI	GGYRCC	3 cut(s)	542, 642, 2482
BanII	GRGCYC	1 cut(s)	1749
BarI	GAAGNNNNNNTAC	2 cut(s)	1650, 1682
BbrPI	CACGTG	1 cut(s)	1931
BbsI	GAAGAC	2 cut(s)	695, 810
Bbv12I	GWGCWC	5 cut(s)	407, 630, 1039, 1759, 2449
BccI	CCATC	4 cut(s)	284, 439, 542, 1667
BceAI	ACGGC	3 cut(s)	350, 642, 757
BcgI	CGANNNNNNTGC	2 cut(s)	431, 465
BciT130I	CCWGG	2 cut(s)	978, 1693
BclI	TGATCA	2 cut(s)	316, 2172
BcnI	CCSGG	3 cut(s)	1744, 2454, 2455
BcoDI	GTCTC	6 cut(s)	376, 987, 1682, 1718, 1744, 2213
BfaI	CTAG	8 cut(s)	942, 1517, 1670, 1752, 2417, 2513, 2601, 2653
BfmI	CTRYAG	1 cut(s)	2535
BfoI	RGCGCY	2 cut(s)	1309, 2040
BfuAI	ACCTGC	2 cut(s)	925, 1354
BglII	AGATCT	2 cut(s)	1072, 1376
BlpI	GCTNAGC	1 cut(s)	1596
Bme1390I	CCNGG	5 cut(s)	978, 1693, 1744, 2454, 2455
Bme18I	GGWCC	2 cut(s)	383, 1199
BmeT110I	CYCGRG	1 cut(s)	2453
BmgT120I	GGNCC	3 cut(s)	383, 1199, 1792
BmiI	GGNNCC	5 cut(s)	384, 544, 644, 2484, 2558
BmrFI	CCNGG	5 cut(s)	978, 1693, 1744, 2454, 2455
BmrI	ACTGGG	4 cut(s)	1308, 1373, 1534, 1950
BmsI	GCATC	8 cut(s)	439, 699, 1252, 1492, 1630, 1994, 2168, 2579
BmtI	GCTAGC	1 cut(s)	945
BmuI	ACTGGG	4 cut(s)	1308, 1373, 1534, 1950
BpiI	GAAGAC	2 cut(s)	695, 810
BplI	GAGNNNNNCTC	2 cut(s)	251, 283
BpmI	CTGGAG	2 cut(s)	1011, 1832
Bpu10I	CCTNAGC	2 cut(s)	834, 1788
Bpu1102I	GCTNAGC	1 cut(s)	1596
BpuEI	CTTGAG	2 cut(s)	169, 967
BpuMI	CCSGG	3 cut(s)	1744, 2454, 2455
BsaAI	YACGTR	1 cut(s)	1931
BsaBI	GATNNNNATC	2 cut(s)	1077, 1245
BsaHI	GRCGYC	2 cut(s)	770, 2421
BsaI	GGTCTC	2 cut(s)	987, 1682
BsaJI	CCNNGG	5 cut(s)	2070, 2294, 2453, 2475, 2552
BsaWI	WCCGGW	1 cut(s)	1196
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	4 cut(s)	215, 1019, 1208, 2071
Bse118I	RCCGGY	2 cut(s)	503, 2426
Bse3DI	GCAATG	1 cut(s)	2446
Bse8I	GATNNNNATC	2 cut(s)	1077, 1245
BseBI	CCWGG	2 cut(s)	978, 1693
BseDI	CCNNGG	5 cut(s)	2070, 2294, 2453, 2475, 2552
BseJI	GATNNNNATC	2 cut(s)	1077, 1245
BseLI	CCNNNNNNNGG	4 cut(s)	215, 1019, 1208, 2071
BseMI	GCAATG	1 cut(s)	2446
BseMII	CTCAG	3 cut(s)	287, 1478, 2252
BseRI	GAGGAG	4 cut(s)	77, 272, 576, 1178
BseSI	GKGCMC	3 cut(s)	598, 1039, 1759
BseYI	CCCAGC	1 cut(s)	2320
BsgI	GTGCAG	5 cut(s)	1518, 1599, 2235, 2432, 2547
Bsh1236I	CGCG	2 cut(s)	441, 727
Bsh1285I	CGRYCG	2 cut(s)	97, 2118
BshFI	GGCC	5 cut(s)	199, 657, 1696, 1794, 2384
BshNI	GGYRCC	3 cut(s)	542, 642, 2482
BsiEI	CGRYCG	2 cut(s)	97, 2118
BsiHKAI	GWGCWC	5 cut(s)	407, 630, 1039, 1759, 2449
BsiHKCI	CYCGRG	1 cut(s)	2453
BsiSI	CCGG	6 cut(s)	504, 1197, 1717, 1743, 2427, 2454
BslFI	GGGAC	5 cut(s)	396, 836, 1380, 1541, 2047
BslI	CCNNNNNNNGG	4 cut(s)	215, 1019, 1208, 2071
BsmAI	GTCTC	6 cut(s)	376, 987, 1682, 1718, 1744, 2213
BsmFI	GGGAC	5 cut(s)	396, 836, 1380, 1541, 2047
BsmI	GAATGC	1 cut(s)	353
BsnI	GGCC	5 cut(s)	199, 657, 1696, 1794, 2384
Bso31I	GGTCTC	2 cut(s)	987, 1682
BsoBI	CYCGRG	1 cut(s)	2453
Bsp1286I	GDGCHC	7 cut(s)	407, 598, 630, 1039, 1749, 1759, 2449
Bsp1720I	GCTNAGC	1 cut(s)	1596
Bsp68I	TCGCGA	1 cut(s)	441
BspACI	CCGC	7 cut(s)	351, 725, 860, 1445, 2118, 2203, 2437
BspANI	GGCC	5 cut(s)	199, 657, 1696, 1794, 2384
BspCNI	CTCAG	3 cut(s)	286, 1477, 2251
BspFNI	CGCG	2 cut(s)	441, 727
BspHI	TCATGA	1 cut(s)	2493
BspLI	GGNNCC	5 cut(s)	384, 544, 644, 2484, 2558
BspMAI	CTGCAG	1 cut(s)	2539
BspMI	ACCTGC	2 cut(s)	925, 1354
BspOI	GCTAGC	1 cut(s)	945
BspPI	GGATC	1 cut(s)	2540
BspQI	GCTCTTC	4 cut(s)	196, 912, 1671, 2454
BspT107I	GGYRCC	3 cut(s)	542, 642, 2482
BspTNI	GGTCTC	2 cut(s)	987, 1682
BsrDI	GCAATG	1 cut(s)	2446
BsrFI	RCCGGY	2 cut(s)	503, 2426
BssAI	RCCGGY	2 cut(s)	503, 2426
BssECI	CCNNGG	5 cut(s)	2070, 2294, 2453, 2475, 2552
BssNI	GRCGYC	2 cut(s)	770, 2421
BssT1I	CCWWGG	2 cut(s)	2070, 2475
Bst2UI	CCWGG	2 cut(s)	978, 1693
Bst4CI	ACNGT	3 cut(s)	694, 1111, 2231
Bst6I	CTCTTC	7 cut(s)	126, 196, 547, 912, 1671, 1848, 2454
BstACI	GRCGYC	2 cut(s)	770, 2421
BstAPI	GCANNNNNTGC	1 cut(s)	2534
BstBAI	YACGTR	1 cut(s)	1931
BstC8I	GCNNGC	7 cut(s)	50, 101, 505, 666, 943, 1310, 2535
BstDEI	CTNAG	8 cut(s)	273, 797, 834, 863, 1464, 1596, 1788, 2238
BstDSI	CCRYGG	1 cut(s)	2294
BstENI	CCTNNNNNAGG	1 cut(s)	1017
BstFNI	CGCG	2 cut(s)	441, 727
BstH2I	RGCGCY	2 cut(s)	1309, 2040
BstHHI	GCGC	4 cut(s)	105, 503, 1308, 2039
BstMAI	GTCTC	6 cut(s)	376, 987, 1682, 1718, 1744, 2213
BstMCI	CGRYCG	2 cut(s)	97, 2118
BstNI	CCWGG	2 cut(s)	978, 1693
BstNSI	RCATGY	1 cut(s)	640
BstSCI	CCNGG	5 cut(s)	976, 1691, 1742, 2452, 2453
BstSFI	CTRYAG	1 cut(s)	2535
BstSLI	GKGCMC	3 cut(s)	598, 1039, 1759
BstUI	CGCG	2 cut(s)	441, 727
BstV2I	GAAGAC	2 cut(s)	695, 810
BstX2I	RGATCY	2 cut(s)	1072, 1376
BstXI	CCANNNNNNTGG	2 cut(s)	1935, 2295
BstYI	RGATCY	2 cut(s)	1072, 1376
BsuRI	GGCC	5 cut(s)	199, 657, 1696, 1794, 2384
BtgI	CCRYGG	1 cut(s)	2294
BtsI	GCAGTG	1 cut(s)	2611
BtsIMutI	CAGTG	6 cut(s)	306, 798, 2126, 2192, 2236, 2611
BtuMI	TCGCGA	1 cut(s)	441
BveI	ACCTGC	2 cut(s)	925, 1354
Cac8I	GCNNGC	7 cut(s)	50, 101, 505, 666, 943, 1310, 2535
CaiI	CAGNNNCTG	4 cut(s)	1448, 1505, 2222, 2645
CciI	TCATGA	1 cut(s)	2493
CfoI	GCGC	4 cut(s)	105, 503, 1308, 2039
Cfr10I	RCCGGY	2 cut(s)	503, 2426
Cfr13I	GGNCC	3 cut(s)	383, 1199, 1792
Cfr9I	CCCGGG	1 cut(s)	2453
CseI	GACGC	2 cut(s)	778, 2359
CsiI	ACCWGGT	1 cut(s)	976
Csp6I	GTAC	5 cut(s)	294, 543, 1112, 1383, 2483
CspCI	CAANNNNNGTGG	2 cut(s)	1812, 1847
CviAII	CATG	6 cut(s)	637, 647, 1099, 1910, 2494, 2500
CviQI	GTAC	5 cut(s)	294, 543, 1112, 1383, 2483
DdeI	CTNAG	8 cut(s)	273, 797, 834, 863, 1464, 1596, 1788, 2238
DraI	TTTAAA	2 cut(s)	13, 61
DraIII	CACNNNGTG	1 cut(s)	980
Eam1104I	CTCTTC	7 cut(s)	126, 196, 547, 912, 1671, 1848, 2454
EarI	CTCTTC	7 cut(s)	126, 196, 547, 912, 1671, 1848, 2454
Eco130I	CCWWGG	2 cut(s)	2070, 2475
Eco24I	GRGCYC	1 cut(s)	1749
Eco31I	GGTCTC	2 cut(s)	987, 1682
Eco47I	GGWCC	2 cut(s)	383, 1199
Eco57I	CTGAAG	4 cut(s)	707, 861, 1002, 1566
Eco72I	CACGTG	1 cut(s)	1931
Eco88I	CYCGRG	1 cut(s)	2453
EcoNI	CCTNNNNNAGG	1 cut(s)	1017
EcoRI	GAATTC	2 cut(s)	2432, 2596
EcoRII	CCWGG	2 cut(s)	976, 1691
EcoT14I	CCWWGG	2 cut(s)	2070, 2475
EcoT22I	ATGCAT	1 cut(s)	1645
EcoT38I	GRGCYC	1 cut(s)	1749
ErhI	CCWWGG	2 cut(s)	2070, 2475
FaeI	CATG	6 cut(s)	640, 650, 1102, 1913, 2497, 2503
FalI	AAGNNNNNCTT	2 cut(s)	2341, 2373
FaqI	GGGAC	5 cut(s)	396, 836, 1380, 1541, 2047
FatI	CATG	6 cut(s)	636, 646, 1098, 1909, 2493, 2499
FbaI	TGATCA	2 cut(s)	316, 2172
FblI	GTMKAC	1 cut(s)	2471
FriOI	GRGCYC	1 cut(s)	1749
FspBI	CTAG	8 cut(s)	942, 1517, 1670, 1752, 2417, 2513, 2601, 2653
GlaI	GCGC	4 cut(s)	104, 502, 1307, 2038
GsaI	CCCAGC	1 cut(s)	2324
GsuI	CTGGAG	2 cut(s)	1011, 1832
HaeII	RGCGCY	2 cut(s)	1309, 2040
HaeIII	GGCC	5 cut(s)	199, 657, 1696, 1794, 2384
HapII	CCGG	6 cut(s)	504, 1197, 1717, 1743, 2427, 2454
HgaI	GACGC	2 cut(s)	778, 2359
HhaI	GCGC	4 cut(s)	105, 503, 1308, 2039
Hin1I	GRCGYC	2 cut(s)	770, 2421
Hin1II	CATG	6 cut(s)	640, 650, 1102, 1913, 2497, 2503
Hin6I	GCGC	4 cut(s)	103, 501, 1306, 2037
HinP1I	GCGC	4 cut(s)	103, 501, 1306, 2037
HincII	GTYRAC	1 cut(s)	2472
HindII	GTYRAC	1 cut(s)	2472
HindIII	AAGCTT	1 cut(s)	1356
HinfI	GANTC	9 cut(s)	824, 1625, 1730, 1873, 1913, 1919, 2078, 2325, 2642
HpaII	CCGG	6 cut(s)	504, 1197, 1717, 1743, 2427, 2454
HphI	GGTGA	1 cut(s)	2441
Hpy166II	GTNNAC	3 cut(s)	1037, 1757, 2472
Hpy188I	TCNGA	9 cut(s)	619, 813, 1255, 1295, 1606, 1918, 2106, 2553, 2647
Hpy8I	GTNNAC	3 cut(s)	1037, 1757, 2472
Hpy99I	CGWCG	2 cut(s)	1002, 2426
HpyAV	CCTTC	9 cut(s)	456, 1484, 1630, 1707, 1857, 1876, 1939, 2516, 2585
HpyCH4III	ACNGT	3 cut(s)	694, 1111, 2231
HpyCH4IV	ACGT	4 cut(s)	1114, 1898, 1930, 2421
HpyF3I	CTNAG	8 cut(s)	273, 797, 834, 863, 1464, 1596, 1788, 2238
HpySE526I	ACGT	4 cut(s)	1114, 1898, 1930, 2421
Hsp92I	GRCGYC	2 cut(s)	770, 2421
Hsp92II	CATG	6 cut(s)	640, 650, 1102, 1913, 2497, 2503
HspAI	GCGC	4 cut(s)	103, 501, 1306, 2037
KpnI	GGTACC	2 cut(s)	546, 2486
KroI	GCCGGC	1 cut(s)	503
KroNI	GCCGGC	1 cut(s)	505
Ksp22I	TGATCA	2 cut(s)	316, 2172
LguI	GCTCTTC	4 cut(s)	196, 912, 1671, 2454
LmnI	GCTCC	3 cut(s)	136, 931, 1676
LweI	GCATC	8 cut(s)	439, 699, 1252, 1492, 1630, 1994, 2168, 2579
MabI	ACCWGGT	1 cut(s)	976
MaeI	CTAG	8 cut(s)	942, 1517, 1670, 1752, 2417, 2513, 2601, 2653
MaeII	ACGT	4 cut(s)	1114, 1898, 1930, 2421
MaeIII	GTNAC	4 cut(s)	42, 231, 304, 2635
MflI	RGATCY	2 cut(s)	1072, 1376
MhlI	GDGCHC	7 cut(s)	407, 598, 630, 1039, 1749, 1759, 2449
MlyI	GAGTC	2 cut(s)	818, 1634
MmeI	TCCRAC	3 cut(s)	756, 1158, 1366
Mph1103I	ATGCAT	1 cut(s)	1645
MroNI	GCCGGC	1 cut(s)	503
MroXI	GAANNNNTTC	1 cut(s)	807
MslI	CAYNNNNRTG	4 cut(s)	635, 2293, 2378, 2498
MspA1I	CMGCKG	3 cut(s)	1445, 1736, 2120
MspI	CCGG	6 cut(s)	504, 1197, 1717, 1743, 2427, 2454
MspR9I	CCNGG	5 cut(s)	978, 1693, 1744, 2454, 2455
Mva1269I	GAATGC	1 cut(s)	353
MvaI	CCWGG	2 cut(s)	978, 1693
MvnI	CGCG	2 cut(s)	441, 727
NaeI	GCCGGC	1 cut(s)	505
NciI	CCSGG	3 cut(s)	1744, 2454, 2455
NgoMIV	GCCGGC	1 cut(s)	503
NheI	GCTAGC	1 cut(s)	941
NlaIII	CATG	6 cut(s)	640, 650, 1102, 1913, 2497, 2503
NlaIV	GGNNCC	5 cut(s)	384, 544, 644, 2484, 2558
NmuCI	GTSAC	4 cut(s)	42, 231, 304, 2635
NruI	TCGCGA	1 cut(s)	441
NsiI	ATGCAT	1 cut(s)	1645
NspI	RCATGY	1 cut(s)	640
OliI	CACNNNNGTG	1 cut(s)	2293
PagI	TCATGA	1 cut(s)	2493
PciI	ACATGT	1 cut(s)	636
PciSI	GCTCTTC	4 cut(s)	196, 912, 1671, 2454
PctI	GAATGC	1 cut(s)	353
PdiI	GCCGGC	1 cut(s)	505
PdmI	GAANNNNTTC	1 cut(s)	807
PfeI	GAWTC	7 cut(s)	1730, 1873, 1913, 1919, 2078, 2325, 2642
Ple19I	CGATCG	1 cut(s)	97
PleI	GAGTC	2 cut(s)	818, 1633
PmaCI	CACGTG	1 cut(s)	1931
PmlI	CACGTG	1 cut(s)	1931
PpsI	GAGTC	2 cut(s)	818, 1633
Ppu21I	YACGTR	1 cut(s)	1931
PscI	ACATGT	1 cut(s)	636
Psp1406I	AACGTT	1 cut(s)	1898
Psp6I	CCWGG	2 cut(s)	976, 1691
PspCI	CACGTG	1 cut(s)	1931
PspFI	CCCAGC	1 cut(s)	2320
PspGI	CCWGG	2 cut(s)	976, 1691
PspN4I	GGNNCC	5 cut(s)	384, 544, 644, 2484, 2558
PspPI	GGNCC	3 cut(s)	383, 1199, 1792
PstI	CTGCAG	1 cut(s)	2539
PstNI	CAGNNNCTG	4 cut(s)	1448, 1505, 2222, 2645
PsuI	RGATCY	2 cut(s)	1072, 1376
PvuI	CGATCG	1 cut(s)	97
PvuII	CAGCTG	1 cut(s)	1736
RgaI	GCGATCGC	1 cut(s)	97
RruI	TCGCGA	1 cut(s)	441
RsaI	GTAC	5 cut(s)	295, 544, 1113, 1384, 2484
RsaNI	GTAC	5 cut(s)	294, 543, 1112, 1383, 2483
RseI	CAYNNNNRTG	4 cut(s)	635, 2293, 2378, 2498
SalI	GTCGAC	1 cut(s)	2470
SapI	GCTCTTC	4 cut(s)	196, 912, 1671, 2454
Sau96I	GGNCC	3 cut(s)	383, 1199, 1792
SchI	GAGTC	2 cut(s)	818, 1634
ScrFI	CCNGG	5 cut(s)	978, 1693, 1744, 2454, 2455
SduI	GDGCHC	7 cut(s)	407, 598, 630, 1039, 1749, 1759, 2449
SexAI	ACCWGGT	1 cut(s)	976
SfaAI	GCGATCGC	1 cut(s)	97
SfaNI	GCATC	8 cut(s)	439, 699, 1252, 1492, 1630, 1994, 2168, 2579
SfcI	CTRYAG	1 cut(s)	2535
SgfI	GCGATCGC	1 cut(s)	97
SgrAI	CRCCGGYG	1 cut(s)	2426
SinI	GGWCC	2 cut(s)	383, 1199
SmaI	CCCGGG	1 cut(s)	2455
SmiMI	CAYNNNNRTG	4 cut(s)	635, 2293, 2378, 2498
SmlI	CTYRAG	2 cut(s)	184, 946
SmoI	CTYRAG	2 cut(s)	184, 946
SsiI	CCGC	7 cut(s)	351, 725, 860, 1445, 2118, 2203, 2437
SspI	AATATT	1 cut(s)	2047
SspMI	CTAG	8 cut(s)	942, 1517, 1670, 1752, 2417, 2513, 2601, 2653
StyD4I	CCNGG	5 cut(s)	976, 1691, 1742, 2452, 2453
StyI	CCWWGG	2 cut(s)	2070, 2475
TaaI	ACNGT	3 cut(s)	694, 1111, 2231
TaiI	ACGT	4 cut(s)	1117, 1901, 1933, 2424
TaqI	TCGA	3 cut(s)	194, 1317, 2471
TaqII	GACCGA	1 cut(s)	1011
TauI	GCSGC	2 cut(s)	1448, 2206
TfiI	GAWTC	7 cut(s)	1730, 1873, 1913, 1919, 2078, 2325, 2642
TscAI	CASTG	6 cut(s)	313, 798, 2133, 2192, 2236, 2611
TseFI	GTSAC	4 cut(s)	42, 231, 304, 2635
Tsp45I	GTSAC	4 cut(s)	42, 231, 304, 2635
TspDTI	ATGAA	7 cut(s)	921, 1503, 1794, 1895, 2346, 2510, 2519
TspGWI	ACGGA	3 cut(s)	743, 2009, 2283
TspMI	CCCGGG	1 cut(s)	2453
TspRI	CASTG	6 cut(s)	313, 798, 2133, 2192, 2236, 2611
VneI	GTGCAC	2 cut(s)	1035, 1755
VpaK11BI	GGWCC	2 cut(s)	383, 1199
XagI	CCTNNNNNAGG	1 cut(s)	1017
XapI	RAATTY	6 cut(s)	8, 781, 869, 2333, 2432, 2596
XbaI	TCTAGA	1 cut(s)	1669
XceI	RCATGY	1 cut(s)	640
XmaI	CCCGGG	1 cut(s)	2453
XmiI	GTMKAC	1 cut(s)	2471
XmnI	GAANNNNTTC	1 cut(s)	807
XspI	CTAG	8 cut(s)	942, 1517, 1670, 1752, 2417, 2513, 2601, 2653
ZraI	GACGTC	1 cut(s)	2422
Zsp2I	ATGCAT	1 cut(s)	1645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.