Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8092052.1

Orthogroup ID

OG0004898

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 594

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8092052.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 251 bp

gtagttcctgcttcagggttttcttttagtgcacagcagatatggagagtcatcaaagaaaacagagatcttgatcttcctgcccacaaggtcatggtggcaactgtacgttgtgaagagattgccaacgagaagcatgctgcttttgtaggaaatgaggagtggagtcagtttgagcaggacgttcaattgggccctattcctggctttgggaagaagctcagttcaatcattgatatgtgtctatcagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006810 GO:0006888 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009832 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0017076 GO:0019001 GO:0022622 GO:0030029 GO:0030036 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032989 GO:0035639 GO:0036094 GO:0040007 GO:0042546 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060560 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0090558 GO:0090627 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0099402 GO:1901265 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RHD3

Protein Analysis

84

Amino Acids

9.3

Weight (kDa)

5.22

Isoelectric Point (pI)

35.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13870 AT3G13870
fragaria_vesca	FvH4_6g33350 FvH4_6g33350 FvH4_6g33350 FvH4_6g33350
malus_domestica	MD09G1193400.v1.1 MD17G1174200.v1.1
prunus_persica	Prupe.3G049800_v2.0.a1
pyrus_communis	pycom09g10990 pycom17g17830
rosa_chinensis	RchiOBHm_Chr2g0143201 RchiOBHm_Chr2g0169871
rosa_laevigata	RLG00000020013
rosa_multiflora	Rmu_co8092052.1_g000001 Rmu_sc0000181.1_g000004 Rmu_sc0003950.1_g000012
rosa_roxburghii	Rroxscaffold_2G00102050 Rroxscaffold_5G00359600 Rroxscaffold_7G00190950 Rroxscaffold_7G00191100
rosa_rugosa	Rorug02G0379200
rosa_samantha	Rh1BG269400 Rh2AG432000 Rh2BG440600 Rh2CG385100 Rh2CG417900 Rh2DG450800 Rh7AG446900
rosa_wichuraiana	Rw2G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	108
AfiI	CCNNNNNNNGG	3 cut(s)	14, 203, 209
AgsI	TTSAA	2 cut(s)	188, 228
AjnI	CCWGG	1 cut(s)	202
AluBI	AGCT	1 cut(s)	220
AluI	AGCT	1 cut(s)	220
Alw21I	GWGCWC	1 cut(s)	34
Alw44I	GTGCAC	1 cut(s)	30
AoxI	GGCC	1 cut(s)	193
ApaI	GGGCCC	1 cut(s)	197
ApaLI	GTGCAC	1 cut(s)	30
ApeKI	GCWGC	1 cut(s)	140
AspS9I	GGNCC	2 cut(s)	193, 194
BaeGI	GKGCMC	2 cut(s)	34, 197
BanII	GRGCYC	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	127
BcgI	CGANNNNNNTGC	2 cut(s)	119, 153
BciT130I	CCWGG	1 cut(s)	204
BglII	AGATCT	1 cut(s)	67
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
Bme1390I	CCNGG	1 cut(s)	204
BmgT120I	GGNCC	2 cut(s)	193, 194
BmiI	GGNNCC	1 cut(s)	195
BmrFI	CCNGG	1 cut(s)	204
BsaBI	GATNNNNATC	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 203, 209
Bse8I	GATNNNNATC	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	204
BseJI	GATNNNNATC	1 cut(s)	72
BseLI	CCNNNNNNNGG	3 cut(s)	14, 203, 209
BseMII	CTCAG	1 cut(s)	235
BseRI	GAGGAG	1 cut(s)	173
BseSI	GKGCMC	2 cut(s)	34, 197
BseXI	GCAGC	1 cut(s)	127
BshFI	GGCC	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	34
BslI	CCNNNNNNNGG	3 cut(s)	14, 203, 209
BsnI	GGCC	1 cut(s)	195
Bsp120I	GGGCCC	1 cut(s)	193
Bsp1286I	GDGCHC	2 cut(s)	34, 197
Bsp143I	GATC	2 cut(s)	67, 73
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	1 cut(s)	234
BspLI	GGNNCC	1 cut(s)	195
BssMI	GATC	2 cut(s)	67, 73
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	1 cut(s)	221
BstENI	CCTNNNNNAGG	1 cut(s)	12
BstKTI	GATC	2 cut(s)	70, 76
BstMBI	GATC	2 cut(s)	67, 73
BstNI	CCWGG	1 cut(s)	204
BstNSI	RCATGY	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	202
BstSLI	GKGCMC	2 cut(s)	34, 197
BstV1I	GCAGC	1 cut(s)	127
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BsuRI	GGCC	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	138
Cfr13I	GGNCC	2 cut(s)	193, 194
Csp6I	GTAC	1 cut(s)	107
CviAII	CATG	2 cut(s)	94, 137
CviJI	RGCY	3 cut(s)	195, 207, 220
CviKI_1	RGCY	3 cut(s)	195, 207, 220
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	1 cut(s)	221
DpnI	GATC	2 cut(s)	69, 75
DpnII	GATC	2 cut(s)	67, 73
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco24I	GRGCYC	1 cut(s)	197
EcoNI	CCTNNNNNAGG	1 cut(s)	12
EcoO109I	RGGNCCY	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	197
FaeI	CATG	2 cut(s)	97, 140
FaiI	YATR	4 cut(s)	43, 95, 138, 239
FatI	CATG	2 cut(s)	93, 136
Fnu4HI	GCNGC	1 cut(s)	141
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	1 cut(s)	141
GluI	GCNGC	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	195
Hin1II	CATG	2 cut(s)	97, 140
HinfI	GANTC	2 cut(s)	48, 166
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188III	TCNNGA	1 cut(s)	71
Hpy8I	GTNNAC	1 cut(s)	32
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4IV	ACGT	2 cut(s)	109, 183
HpyCH4V	TGCA	1 cut(s)	32
HpyF3I	CTNAG	1 cut(s)	221
HpySE526I	ACGT	2 cut(s)	109, 183
Hsp92II	CATG	2 cut(s)	97, 140
Kzo9I	GATC	2 cut(s)	67, 73
LpnPI	CCDG	6 cut(s)	21, 93, 164, 189, 216, 234
Lsp1109I	GCAGC	1 cut(s)	127
MaeII	ACGT	2 cut(s)	109, 183
MalI	GATC	2 cut(s)	69, 75
MboI	GATC	2 cut(s)	67, 73
MboII	GAAGA	3 cut(s)	68, 128, 226
MfeI	CAATTG	1 cut(s)	188
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	2 cut(s)	34, 197
MluCI	AATT	1 cut(s)	188
MlyI	GAGTC	2 cut(s)	57, 175
MnlI	CCTC	1 cut(s)	151
MslI	CAYNNNNRTG	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	204
MunI	CAATTG	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	204
NdeII	GATC	2 cut(s)	67, 73
NlaIII	CATG	2 cut(s)	97, 140
NlaIV	GGNNCC	1 cut(s)	195
NspI	RCATGY	1 cut(s)	140
PaeI	GCATGC	1 cut(s)	140
PkrI	GCNGC	1 cut(s)	142
PleI	GAGTC	2 cut(s)	56, 174
PpsI	GAGTC	2 cut(s)	56, 174
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	1 cut(s)	195
PspOMI	GGGCCC	1 cut(s)	193
PspPI	GGNCC	2 cut(s)	193, 194
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
RseI	CAYNNNNRTG	1 cut(s)	236
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	2 cut(s)	67, 73
Sau96I	GGNCC	2 cut(s)	193, 194
SchI	GAGTC	2 cut(s)	57, 175
ScrFI	CCNGG	1 cut(s)	204
SduI	GDGCHC	2 cut(s)	34, 197
SetI	ASST	4 cut(s)	93, 112, 186, 222
SmiMI	CAYNNNNRTG	1 cut(s)	236
SphI	GCATGC	1 cut(s)	140
Sse9I	AATT	1 cut(s)	188
StyD4I	CCNGG	1 cut(s)	202
TaaI	ACNGT	1 cut(s)	106
TaiI	ACGT	2 cut(s)	112, 186
TasI	AATT	1 cut(s)	188
TseI	GCWGC	1 cut(s)	140
VneI	GTGCAC	1 cut(s)	30
XagI	CCTNNNNNAGG	1 cut(s)	12
XceI	RCATGY	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.