Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004898

Physical Location & Seq

Genomic Coordinates Forward (+)

39748395 .. 39751234

Gene Structure 2840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00359600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGCACTACGCAGTGGTGAGCACCACCGGCGCCATCGGCAAGCTTAACGAGGTCGAGATAGAGTATGGCGAGGTCTTGTGCCCCGACCTCGCAAAGGTGAGAAAGCATGGCACCTCCTATCCATTCTATTGTCGGTGCCCTAATTCTCACATTTGTTCGACGGAGGAGGGGGAAGCACTTTTCACGGAGGCCATGGAGGCGGAAGACAACAAGCGTAATAACAATTGGCTACCACCTCCTTGGGCTATTCTTGCCTTGGATTTGGAGAAGATTGAGAATTATGCAGGCATTCACCAACTTATCAACAATAACAGTGCAGTAAAGCAGCAAATGTCAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006810 GO:0006888 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009832 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0017076 GO:0019001 GO:0022622 GO:0030029 GO:0030036 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032989 GO:0035639 GO:0036094 GO:0040007 GO:0042546 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060560 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0090558 GO:0090627 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0099402 GO:1901265 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RHD3

Protein Analysis

113

Amino Acids

12.68

Weight (kDa)

5.1

Isoelectric Point (pI)

63.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13870 AT3G13870
fragaria_vesca	FvH4_6g33350 FvH4_6g33350 FvH4_6g33350 FvH4_6g33350
malus_domestica	MD09G1193400.v1.1 MD17G1174200.v1.1
prunus_persica	Prupe.3G049800_v2.0.a1
pyrus_communis	pycom09g10990 pycom17g17830
rosa_chinensis	RchiOBHm_Chr2g0143201 RchiOBHm_Chr2g0169871
rosa_laevigata	RLG00000020013
rosa_multiflora	Rmu_co8092052.1_g000001 Rmu_sc0000181.1_g000004 Rmu_sc0003950.1_g000012
rosa_roxburghii	Rroxscaffold_2G00102050 Rroxscaffold_5G00359600 Rroxscaffold_7G00190950 Rroxscaffold_7G00191100
rosa_rugosa	Rorug02G0379200
rosa_samantha	Rh1BG269400 Rh2AG432000 Rh2BG440600 Rh2CG385100 Rh2CG417900 Rh2DG450800 Rh7AG446900
rosa_wichuraiana	Rw2G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	29, 110, 135
AciI	CCGC	1 cut(s)	200
AcyI	GRCGYC	1 cut(s)	30
AfiI	CCNNNNNNNGG	1 cut(s)	94
AluBI	AGCT	1 cut(s)	43
AluI	AGCT	1 cut(s)	43
Alw21I	GWGCWC	1 cut(s)	23
AoxI	GGCC	1 cut(s)	189
ApeKI	GCWGC	1 cut(s)	325
AspLEI	GCGC	1 cut(s)	32
AsuHPI	GGTGA	3 cut(s)	28, 109, 284
BaeGI	GKGCMC	2 cut(s)	83, 140
BanI	GGYRCC	3 cut(s)	29, 110, 135
BbsI	GAAGAC	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	1 cut(s)	41
BfoI	RGCGCY	1 cut(s)	33
BglI	GCCNNNNNGGC	1 cut(s)	197
BisI	GCNGC	1 cut(s)	326
BlsI	GCNGC	1 cut(s)	327
BmiI	GGNNCC	3 cut(s)	31, 112, 137
BpiI	GAAGAC	1 cut(s)	210
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	3 cut(s)	192, 239, 255
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse118I	RCCGGY	1 cut(s)	26
BseDI	CCNNGG	3 cut(s)	192, 239, 255
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseRI	GAGGAG	1 cut(s)	179
BseSI	GKGCMC	2 cut(s)	83, 140
BseXI	GCAGC	1 cut(s)	337
BsgI	GTGCAG	1 cut(s)	336
BshFI	GGCC	1 cut(s)	191
BshNI	GGYRCC	3 cut(s)	29, 110, 135
BsiHKAI	GWGCWC	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	27
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmI	GAATGC	1 cut(s)	288
BsnI	GGCC	1 cut(s)	191
Bsp1286I	GDGCHC	3 cut(s)	23, 83, 140
Bsp19I	CCATGG	1 cut(s)	192
BspACI	CCGC	1 cut(s)	200
BspANI	GGCC	1 cut(s)	191
BspLI	GGNNCC	3 cut(s)	31, 112, 137
BspT107I	GGYRCC	3 cut(s)	29, 110, 135
BsrFI	RCCGGY	1 cut(s)	26
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	3 cut(s)	192, 239, 255
BssNI	GRCGYC	1 cut(s)	30
BssT1I	CCWWGG	3 cut(s)	192, 239, 255
Bst4CI	ACNGT	1 cut(s)	314
BstACI	GRCGYC	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	41, 286
BstDSI	CCRYGG	1 cut(s)	192
BstENI	CCTNNNNNAGG	1 cut(s)	92
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	32
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 36, 197, 251
BstSLI	GKGCMC	2 cut(s)	83, 140
BstV1I	GCAGC	1 cut(s)	337
BstV2I	GAAGAC	1 cut(s)	210
BstXI	CCANNNNNNTGG	1 cut(s)	240
BsuRI	GGCC	1 cut(s)	191
BtgI	CCRYGG	1 cut(s)	192
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	2 cut(s)	18, 319
Cac8I	GCNNGC	2 cut(s)	41, 286
CfoI	GCGC	1 cut(s)	32
Cfr10I	RCCGGY	1 cut(s)	26
CviAII	CATG	2 cut(s)	107, 193
CviJI	RGCY	4 cut(s)	43, 191, 229, 245
CviKI_1	RGCY	4 cut(s)	43, 191, 229, 245
DinI	GGCGCC	1 cut(s)	31
EciI	GGCGGA	1 cut(s)	215
Eco130I	CCWWGG	3 cut(s)	192, 239, 255
EcoNI	CCTNNNNNAGG	1 cut(s)	92
EcoT14I	CCWWGG	3 cut(s)	192, 239, 255
EgeI	GGCGCC	1 cut(s)	31
EheI	GGCGCC	1 cut(s)	31
ErhI	CCWWGG	3 cut(s)	192, 239, 255
FaeI	CATG	2 cut(s)	110, 196
FaiI	YATR	5 cut(s)	66, 108, 194, 282, 340
FatI	CATG	2 cut(s)	106, 192
Fnu4HI	GCNGC	1 cut(s)	326
Fsp4HI	GCNGC	1 cut(s)	326
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	1 cut(s)	326
HaeII	RGCGCY	1 cut(s)	33
HaeIII	GGCC	1 cut(s)	191
HapII	CCGG	1 cut(s)	27
HhaI	GCGC	1 cut(s)	32
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	2 cut(s)	110, 196
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HincII	GTYRAC	1 cut(s)	336
HindII	GTYRAC	1 cut(s)	336
HindIII	AAGCTT	1 cut(s)	41
HpaII	CCGG	1 cut(s)	27
HphI	GGTGA	3 cut(s)	28, 109, 284
Hpy166II	GTNNAC	1 cut(s)	336
Hpy188III	TCNNGA	1 cut(s)	55
Hpy8I	GTNNAC	1 cut(s)	336
Hpy99I	CGWCG	1 cut(s)	163
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4V	TGCA	3 cut(s)	4, 284, 317
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 36, 197, 251
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	110, 196
HspAI	GCGC	1 cut(s)	30
KasI	GGCGCC	1 cut(s)	29
LpnPI	CCDG	2 cut(s)	40, 270
Lsp1109I	GCAGC	1 cut(s)	337
MboII	GAAGA	2 cut(s)	215, 280
MfeI	CAATTG	1 cut(s)	223
MhlI	GDGCHC	3 cut(s)	23, 83, 140
MluCI	AATT	3 cut(s)	142, 223, 277
Mly113I	GGCGCC	1 cut(s)	30
MnlI	CCTC	9 cut(s)	43, 64, 98, 124, 157, 160, 181, 190, 246
MseI	TTAA	1 cut(s)	45
MspI	CCGG	1 cut(s)	27
MunI	CAATTG	1 cut(s)	223
Mva1269I	GAATGC	1 cut(s)	288
MwoI	GCNNNNNNNGC	4 cut(s)	27, 36, 197, 251
NarI	GGCGCC	1 cut(s)	30
NcoI	CCATGG	1 cut(s)	192
NlaIII	CATG	2 cut(s)	110, 196
NlaIV	GGNNCC	3 cut(s)	31, 112, 137
PctI	GAATGC	1 cut(s)	288
PkrI	GCNGC	1 cut(s)	327
PluTI	GGCGCC	1 cut(s)	33
PspN4I	GGNNCC	3 cut(s)	31, 112, 137
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	1 cut(s)	326
SduI	GDGCHC	3 cut(s)	23, 83, 140
SetI	ASST	7 cut(s)	45, 54, 75, 90, 99, 116, 238
SfoI	GGCGCC	1 cut(s)	31
SgrAI	CRCCGGYG	1 cut(s)	26
Sse9I	AATT	3 cut(s)	142, 223, 277
SsiI	CCGC	1 cut(s)	200
SspDI	GGCGCC	1 cut(s)	29
StyI	CCWWGG	3 cut(s)	192, 239, 255
TaaI	ACNGT	1 cut(s)	314
TaqI	TCGA	2 cut(s)	54, 158
TasI	AATT	3 cut(s)	142, 223, 277
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	2 cut(s)	18, 319
TseI	GCWGC	1 cut(s)	325
TspGWI	ACGGA	2 cut(s)	176, 200
TspRI	CASTG	2 cut(s)	18, 319
XagI	CCTNNNNNAGG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.