Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004898

Physical Location & Seq

Genomic Coordinates Reverse (-)

17321755 .. 17331850

Gene Structure 10096 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1193400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2433 bp

ATGGCAAAAAGTGAGGAGTGCTGCTCTACTCAGCTTCTTGACGGGGATGGTACATTCAATGTCACTGGAATTGATCAGTTTATTAAGGAGGCAAAATTGGCTGAATGTGGACTTTCTTATGCTGTTGTCTCCATTATGGGACCACAAAGTAGTGGAAAGAGCACATTGTTAAATCATTTATTTGCTACCAACTTTCGCGAGATGGATGCTTTTAGAGGAAGGTCACAAACAACCAAAGGTATTTGGGTTGCAAAATGTGCCGGCATTGAGCCTTGCACTCTTGTAATGGATTTAGAGGGTACCGATGGAAGAGAACGAGGAGAGGATGATACTGCATTTGAGAAGCAGAGTGCCCTCTTTGCTCTTGCTGTTTCAGATATAGTGCTCATAAACATGTGGTGCCATGATATAGGCCGTGAGCAAGCTGCAAACAAGCCTCTCCTGAAGACTGTGTTCCAAGTGATGATGCGATTATTTAGTCCGCGTAAAACAACCCTGATGTTTGTCATCCGTGATAAGACAAGGACGCCGTTGGAAAATTTAGAACCAGTGCTTAGAGAAGACATTCAGAAGATATGGGACTCTGTTCCTAAGCCTGAAGCCCACAAGGAAACTCCACTAAGTGAATTTTTTAATGTTGAGGTTGTTGCTCTTTCAAGTTATGAAGAAAAGGAAGAGCAATTTAAGGAGCAGGTTGCTAGCTTGAGGCAGAGATTTTATCATTCTATTGCACCTGGTGGTCTTGCTGGAGACCGACGGGGAGTAGTTCCGGCTTCAGGGTTTTCGTTTAGTGCACAGCAGATATGGAAAGTCATCAAAGAAAACAAAGATCTTGATCTTCCTGCCCACAAGGTCATGGTGGCTACTGTACGTTGTGAAGAAATTGCAAATGAGAAGTATGCTGCTTTTGCAGGAAATGAGGAGTGGAGTGAGTTGGATGAGGCTGTTCAGTCCGGTCCTATTTCTGGCTTTGGGAAGAAGCTCAATTCAATCCTTGATACTTGTCTATCAGAGTATGATGCAGAGGCTATATATTTTGATGAGGGTGTCAGAACTGGGAAGCGCCAGCAGCTCGAAGAAAAATTGCTGCAACTTGTCCAACCTGCGTTCCAAGCTTTGCTGGGACATATAAGATCTGGTACTCTGGATAAGTTCAAGGAAGCATTTGATAAGGCTTTGAAAGGTGGGGAGGGATTTTCAGCGGCTGCTCATAATTGCTCTCAGTCCTTTATGGCTTGGTTTGATGAAGGATGTGCAGATGCTGTTATCACACTAGCAAACTGGGACACATCAAAAGTAAGGGATAAACTTAAACGAGATATAGAAGCCCATATTGCTTCAGTTCGTGCTGCTAAGCTATCTGAACTTACTGCACTTTATGAGTCAAAATTGAAGGATGCATTATCGGCACCAGTAGAGGCTCTTCTAGATGGAGCTAATAGTGAGACCTGGCCTTCAATAAGAAAACTTTTCCGGCGTGAGACAGAATCAGCTGTCTCCGGGCTCTCTAGTGCACTTTCTGGTTTTGATATGGATGAAGAAGCTAAGGGCCAAATACTTGCAAATCTGGAGGCATATGCAAGAGGTGTGGTAGAAGCTAAAACAAAGGAAGAGGCTGGAAGGGTTTTGATTCGTATGAAGGACAGGTTTGCAACGTTATTTAGCCATGATTCTGATTCAATGCCACGTGTCTGGACCGGGAAGGAAGATATTAGAGCAATTACCAAAACTGCTCGTTCTGCATCCTTAAAATTGCTTTCTGTTATGGCCGCAATCCGTTTGGATGATGAGGGCGCTGATAATATTGAGAATACTTTGTCCCTTGCCTTGGTGGATTCCACAAATGCTGCTGTTAAAGATAGGAGTATCACGATCGCTGACCCACTGGCTTCAAGCACTTGGCAAGAGATTTCCGCATCAAAAACATTGATCACACCTGTCCAGTGCAAATCTTTGTGGCGGCAATTCAAGGCAGAGACTGAGTACAGTGTTTCTCAGGCTATTTCTGCACAGGAAGCTAACAAGCGTAATAACAACTGGTTGCCACCTCCGTGGGCTATTGTTGCCTTGATTGTGCTGGGATTCAATGAATTTATGACACTTTTAAGAAATCCTTTCTATCTGTGCGTCATCTTTGTGGGCTTTTTACTCGTTAAAGCCCTATGGGTGCAGCTAGACGTCGCGGGTGAATTCCGCAATGGTGCTCTTCCCGGGCTTCTATCCTTGTCGACCAAGGTGGTACCAACTATCATGAACATGATGAAAAGACTAGCAGAAGAAGGGGCAAAGCCTGCAGCTAATGATCCTCCGAGGAACCCTGCACCAGCATCAACAGGCTATGGGAAAGAAGGGAATTCTAGCAGTGAAATTTCATCAAGTGGCTCATCAGGAGTGACAGAATCTGAATACTCCAGCTCCTCAAAACACGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006810 GO:0006888 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009832 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0017076 GO:0019001 GO:0022622 GO:0030029 GO:0030036 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032989 GO:0035639 GO:0036094 GO:0040007 GO:0042546 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060560 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0090558 GO:0090627 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0099402 GO:1901265 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RHD3

Protein Analysis

811

Amino Acids

89.11

Weight (kDa)

5.38

Isoelectric Point (pI)

41.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
URGCP_GTPase	PF25683	35 - 169	1.1e-07	URGCP-like GTPase domain
RHD3_GTPase	PF05879	46 - 281	5e-118	Root hair defective 3 GTP-binding protein (RHD3) GTPase domain
Sey1_3HB	PF20428	323 - 760	1.6e-148	Sey1 three-helix bundle domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13870 AT3G13870
fragaria_vesca	FvH4_6g33350 FvH4_6g33350 FvH4_6g33350 FvH4_6g33350
malus_domestica	MD09G1193400.v1.1 MD17G1174200.v1.1
prunus_persica	Prupe.3G049800_v2.0.a1
pyrus_communis	pycom09g10990 pycom17g17830
rosa_chinensis	RchiOBHm_Chr2g0143201 RchiOBHm_Chr2g0169871
rosa_laevigata	RLG00000020013
rosa_multiflora	Rmu_co8092052.1_g000001 Rmu_sc0000181.1_g000004 Rmu_sc0003950.1_g000012
rosa_roxburghii	Rroxscaffold_2G00102050 Rroxscaffold_5G00359600 Rroxscaffold_7G00190950 Rroxscaffold_7G00191100
rosa_rugosa	Rorug02G0379200
rosa_samantha	Rh1BG269400 Rh2AG432000 Rh2BG440600 Rh2CG385100 Rh2CG417900 Rh2DG450800 Rh7AG446900
rosa_wichuraiana	Rw2G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	2181
Acc36I	ACCTGC	2 cut(s)	682, 1111
Acc65I	GGTACC	2 cut(s)	299, 2239
AccB1I	GGYRCC	4 cut(s)	299, 399, 1408, 2239
AccI	GTMKAC	1 cut(s)	2228
AccII	CGCG	3 cut(s)	198, 484, 2183
AciI	CCGC	7 cut(s)	482, 1202, 1770, 1914, 1960, 2183, 2194
AclI	AACGTT	1 cut(s)	1655
AclWI	GGATC	1 cut(s)	2297
AcoI	YGGCCR	1 cut(s)	1767
AcsI	RAATTY	6 cut(s)	538, 626, 2090, 2189, 2353, 2367
AcuI	CTGAAG	4 cut(s)	464, 618, 759, 1323
AcvI	CACGTG	1 cut(s)	1688
AcyI	GRCGYC	2 cut(s)	527, 2178
AdeI	CACNNNGTG	2 cut(s)	623, 737
AfaI	GTAC	6 cut(s)	52, 301, 870, 1141, 1985, 2241
AfiI	CCNNNNNNNGG	3 cut(s)	776, 965, 1828
AflIII	ACRYGT	2 cut(s)	393, 1687
AjnI	CCWGG	2 cut(s)	733, 1448
AleI	CACNNNNGTG	1 cut(s)	2050
Alw21I	GWGCWC	5 cut(s)	164, 387, 796, 1516, 2206
Alw26I	GTCTC	6 cut(s)	133, 744, 1439, 1475, 1501, 1970
Alw44I	GTGCAC	2 cut(s)	792, 1512
AlwI	GGATC	1 cut(s)	2297
AlwNI	CAGNNNCTG	4 cut(s)	1205, 1262, 1979, 2402
Ama87I	CYCGRG	1 cut(s)	2210
AoxI	GGCC	4 cut(s)	412, 1451, 1549, 1767
ApaLI	GTGCAC	2 cut(s)	792, 1512
ApoI	RAATTY	6 cut(s)	538, 626, 2090, 2189, 2353, 2367
Asp700I	GAANNNNTTC	1 cut(s)	564
Asp718I	GGTACC	2 cut(s)	299, 2239
AspLEI	GCGC	2 cut(s)	1065, 1796
AspS9I	GGNCC	4 cut(s)	140, 956, 1549, 1695
AsuC2I	CCSGG	4 cut(s)	1501, 1699, 2211, 2212
AsuHPI	GGTGA	1 cut(s)	2198
AsuNHI	GCTAGC	1 cut(s)	698
AvaI	CYCGRG	1 cut(s)	2210
AvaII	GGWCC	3 cut(s)	140, 956, 1695
BaeGI	GKGCMC	3 cut(s)	355, 796, 1516
BanI	GGYRCC	4 cut(s)	299, 399, 1408, 2239
BanII	GRGCYC	1 cut(s)	1506
BarI	GAAGNNNNNNTAC	2 cut(s)	1407, 1439
BbrPI	CACGTG	1 cut(s)	1688
BbsI	GAAGAC	2 cut(s)	452, 567
Bbv12I	GWGCWC	5 cut(s)	164, 387, 796, 1516, 2206
BccI	CCATC	4 cut(s)	41, 196, 299, 1424
BceAI	ACGGC	2 cut(s)	399, 514
BcgI	CGANNNNNNTGC	2 cut(s)	188, 222
BciT130I	CCWGG	2 cut(s)	735, 1450
BclI	TGATCA	2 cut(s)	73, 1929
BcnI	CCSGG	4 cut(s)	1501, 1699, 2211, 2212
BcoDI	GTCTC	6 cut(s)	133, 744, 1439, 1475, 1501, 1970
BfaI	CTAG	8 cut(s)	699, 1274, 1427, 1509, 2174, 2270, 2358, 2431
BfmI	CTRYAG	1 cut(s)	2292
BfoI	RGCGCY	2 cut(s)	1066, 1797
BfuAI	ACCTGC	2 cut(s)	682, 1111
BglII	AGATCT	2 cut(s)	829, 1133
BlpI	GCTNAGC	1 cut(s)	1353
Bme1390I	CCNGG	6 cut(s)	735, 1450, 1501, 1699, 2211, 2212
Bme18I	GGWCC	3 cut(s)	140, 956, 1695
BmeT110I	CYCGRG	1 cut(s)	2210
BmgT120I	GGNCC	4 cut(s)	140, 956, 1549, 1695
BmiI	GGNNCC	6 cut(s)	141, 301, 401, 1410, 2241, 2315
BmrFI	CCNGG	6 cut(s)	735, 1450, 1501, 1699, 2211, 2212
BmrI	ACTGGG	2 cut(s)	1065, 1291
BmsI	GCATC	8 cut(s)	196, 456, 1009, 1249, 1387, 1751, 1925, 2336
BmtI	GCTAGC	1 cut(s)	702
BmuI	ACTGGG	2 cut(s)	1065, 1291
BpiI	GAAGAC	2 cut(s)	452, 567
BplI	GAGNNNNNCTC	2 cut(s)	8, 40
BpmI	CTGGAG	3 cut(s)	768, 1589, 2395
Bpu10I	CCTNAGC	2 cut(s)	591, 1545
Bpu1102I	GCTNAGC	1 cut(s)	1353
BpuEI	CTTGAG	1 cut(s)	724
BpuMI	CCSGG	4 cut(s)	1501, 1699, 2211, 2212
BsaAI	YACGTR	1 cut(s)	1688
BsaBI	GATNNNNATC	1 cut(s)	834
BsaHI	GRCGYC	2 cut(s)	527, 2178
BsaI	GGTCTC	2 cut(s)	744, 1439
BsaJI	CCNNGG	5 cut(s)	1827, 2051, 2210, 2232, 2309
BsaWI	WCCGGW	1 cut(s)	953
BsaXI	ACNNNNNCTCC	2 cut(s)	2399, 2429
Bsc4I	CCNNNNNNNGG	3 cut(s)	776, 965, 1828
Bse118I	RCCGGY	1 cut(s)	260
Bse1I	ACTGG	8 cut(s)	70, 548, 1060, 1286, 1412, 1890, 1942, 2042
Bse3DI	GCAATG	1 cut(s)	2203
Bse8I	GATNNNNATC	1 cut(s)	834
BseBI	CCWGG	2 cut(s)	735, 1450
BseDI	CCNNGG	5 cut(s)	1827, 2051, 2210, 2232, 2309
BseJI	GATNNNNATC	1 cut(s)	834
BseLI	CCNNNNNNNGG	3 cut(s)	776, 965, 1828
BseMI	GCAATG	1 cut(s)	2203
BseMII	CTCAG	4 cut(s)	44, 1235, 1971, 2009
BseNI	ACTGG	8 cut(s)	70, 548, 1060, 1286, 1412, 1890, 1942, 2042
BseRI	GAGGAG	4 cut(s)	29, 333, 935, 2407
BseSI	GKGCMC	3 cut(s)	355, 796, 1516
BseYI	CCCAGC	2 cut(s)	1120, 2077
BsgI	GTGCAG	5 cut(s)	1275, 1356, 1992, 2189, 2304
Bsh1236I	CGCG	3 cut(s)	198, 484, 2183
Bsh1285I	CGRYCG	1 cut(s)	1875
BshFI	GGCC	4 cut(s)	414, 1453, 1551, 1769
BshNI	GGYRCC	4 cut(s)	299, 399, 1408, 2239
BsiEI	CGRYCG	1 cut(s)	1875
BsiHKAI	GWGCWC	5 cut(s)	164, 387, 796, 1516, 2206
BsiHKCI	CYCGRG	1 cut(s)	2210
BsiSI	CCGG	7 cut(s)	261, 770, 954, 1474, 1500, 1698, 2211
BslFI	GGGAC	5 cut(s)	153, 593, 1137, 1298, 1804
BslI	CCNNNNNNNGG	3 cut(s)	776, 965, 1828
BsmAI	GTCTC	6 cut(s)	133, 744, 1439, 1475, 1501, 1970
BsmFI	GGGAC	5 cut(s)	153, 593, 1137, 1298, 1804
BsnI	GGCC	4 cut(s)	414, 1453, 1551, 1769
Bso31I	GGTCTC	2 cut(s)	744, 1439
BsoBI	CYCGRG	1 cut(s)	2210
Bsp1286I	GDGCHC	7 cut(s)	164, 355, 387, 796, 1506, 1516, 2206
Bsp143I	GATC	7 cut(s)	73, 829, 835, 1133, 1872, 1929, 2302
Bsp1720I	GCTNAGC	1 cut(s)	1353
Bsp68I	TCGCGA	1 cut(s)	198
BspACI	CCGC	7 cut(s)	482, 1202, 1770, 1914, 1960, 2183, 2194
BspANI	GGCC	4 cut(s)	414, 1453, 1551, 1769
BspCNI	CTCAG	4 cut(s)	43, 1234, 1972, 2008
BspFNI	CGCG	3 cut(s)	198, 484, 2183
BspHI	TCATGA	1 cut(s)	2250
BspLI	GGNNCC	6 cut(s)	141, 301, 401, 1410, 2241, 2315
BspMAI	CTGCAG	1 cut(s)	2296
BspMI	ACCTGC	2 cut(s)	682, 1111
BspOI	GCTAGC	1 cut(s)	702
BspPI	GGATC	1 cut(s)	2297
BspQI	GCTCTTC	3 cut(s)	669, 1428, 2211
BspT107I	GGYRCC	4 cut(s)	299, 399, 1408, 2239
BspTNI	GGTCTC	2 cut(s)	744, 1439
BsrDI	GCAATG	1 cut(s)	2203
BsrFI	RCCGGY	1 cut(s)	260
BsrI	ACTGG	8 cut(s)	70, 548, 1060, 1286, 1412, 1890, 1942, 2042
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	5 cut(s)	1827, 2051, 2210, 2232, 2309
BssMI	GATC	7 cut(s)	73, 829, 835, 1133, 1872, 1929, 2302
BssNI	GRCGYC	2 cut(s)	527, 2178
BssT1I	CCWWGG	2 cut(s)	1827, 2232
Bst2UI	CCWGG	2 cut(s)	735, 1450
Bst4CI	ACNGT	3 cut(s)	451, 868, 1988
Bst6I	CTCTTC	5 cut(s)	304, 669, 1428, 1605, 2211
BstACI	GRCGYC	2 cut(s)	527, 2178
BstAPI	GCANNNNNTGC	2 cut(s)	257, 2291
BstBAI	YACGTR	1 cut(s)	1688
BstC8I	GCNNGC	5 cut(s)	262, 423, 700, 1067, 2292
BstDEI	CTNAG	9 cut(s)	30, 554, 591, 620, 1221, 1353, 1545, 1980, 1995
BstDSI	CCRYGG	1 cut(s)	2051
BstFNI	CGCG	3 cut(s)	198, 484, 2183
BstH2I	RGCGCY	2 cut(s)	1066, 1797
BstHHI	GCGC	2 cut(s)	1065, 1796
BstKTI	GATC	7 cut(s)	76, 832, 838, 1136, 1875, 1932, 2305
BstMAI	GTCTC	6 cut(s)	133, 744, 1439, 1475, 1501, 1970
BstMBI	GATC	7 cut(s)	73, 829, 835, 1133, 1872, 1929, 2302
BstMCI	CGRYCG	1 cut(s)	1875
BstNI	CCWGG	2 cut(s)	735, 1450
BstNSI	RCATGY	1 cut(s)	397
BstSCI	CCNGG	6 cut(s)	733, 1448, 1499, 1697, 2209, 2210
BstSFI	CTRYAG	1 cut(s)	2292
BstSLI	GKGCMC	3 cut(s)	355, 796, 1516
BstUI	CGCG	3 cut(s)	198, 484, 2183
BstV2I	GAAGAC	2 cut(s)	452, 567
BstX2I	RGATCY	2 cut(s)	829, 1133
BstXI	CCANNNNNNTGG	2 cut(s)	1692, 2052
BstYI	RGATCY	2 cut(s)	829, 1133
BsuRI	GGCC	4 cut(s)	414, 1453, 1551, 1769
BtgI	CCRYGG	1 cut(s)	2051
BtsI	GCAGTG	1 cut(s)	2368
BtsIMutI	CAGTG	6 cut(s)	63, 555, 1883, 1949, 1993, 2368
BtuMI	TCGCGA	1 cut(s)	198
BveI	ACCTGC	2 cut(s)	682, 1111
Cac8I	GCNNGC	5 cut(s)	262, 423, 700, 1067, 2292
CaiI	CAGNNNCTG	4 cut(s)	1205, 1262, 1979, 2402
CciI	TCATGA	1 cut(s)	2250
CfoI	GCGC	2 cut(s)	1065, 1796
Cfr10I	RCCGGY	1 cut(s)	260
Cfr13I	GGNCC	4 cut(s)	140, 956, 1549, 1695
Cfr9I	CCCGGG	1 cut(s)	2210
CseI	GACGC	2 cut(s)	535, 2116
CsiI	ACCWGGT	1 cut(s)	733
Csp6I	GTAC	6 cut(s)	51, 300, 869, 1140, 1984, 2240
CspCI	CAANNNNNGTGG	2 cut(s)	1569, 1604
CviAII	CATG	6 cut(s)	394, 404, 856, 1667, 2251, 2257
CviQI	GTAC	6 cut(s)	51, 300, 869, 1140, 1984, 2240
DdeI	CTNAG	9 cut(s)	30, 554, 591, 620, 1221, 1353, 1545, 1980, 1995
DpnI	GATC	7 cut(s)	75, 831, 837, 1135, 1874, 1931, 2304
DpnII	GATC	7 cut(s)	73, 829, 835, 1133, 1872, 1929, 2302
DraIII	CACNNNGTG	2 cut(s)	623, 737
EaeI	YGGCCR	1 cut(s)	1767
Eam1104I	CTCTTC	5 cut(s)	304, 669, 1428, 1605, 2211
EarI	CTCTTC	5 cut(s)	304, 669, 1428, 1605, 2211
Eco130I	CCWWGG	2 cut(s)	1827, 2232
Eco24I	GRGCYC	1 cut(s)	1506
Eco31I	GGTCTC	2 cut(s)	744, 1439
Eco47I	GGWCC	3 cut(s)	140, 956, 1695
Eco57I	CTGAAG	4 cut(s)	464, 618, 759, 1323
Eco72I	CACGTG	1 cut(s)	1688
Eco88I	CYCGRG	1 cut(s)	2210
EcoRI	GAATTC	2 cut(s)	2189, 2353
EcoRII	CCWGG	2 cut(s)	733, 1448
EcoT14I	CCWWGG	2 cut(s)	1827, 2232
EcoT22I	ATGCAT	1 cut(s)	1402
EcoT38I	GRGCYC	1 cut(s)	1506
ErhI	CCWWGG	2 cut(s)	1827, 2232
FaeI	CATG	6 cut(s)	397, 407, 859, 1670, 2254, 2260
FalI	AAGNNNNNCTT	2 cut(s)	2098, 2130
FaqI	GGGAC	5 cut(s)	153, 593, 1137, 1298, 1804
FatI	CATG	6 cut(s)	393, 403, 855, 1666, 2250, 2256
FauI	CCCGC	1 cut(s)	2176
FauNDI	CATATG	1 cut(s)	1576
FbaI	TGATCA	2 cut(s)	73, 1929
FblI	GTMKAC	1 cut(s)	2228
FriOI	GRGCYC	1 cut(s)	1506
FspBI	CTAG	8 cut(s)	699, 1274, 1427, 1509, 2174, 2270, 2358, 2431
GlaI	GCGC	2 cut(s)	1064, 1795
GsaI	CCCAGC	2 cut(s)	1124, 2081
GsuI	CTGGAG	3 cut(s)	768, 1589, 2395
HaeII	RGCGCY	2 cut(s)	1066, 1797
HaeIII	GGCC	4 cut(s)	414, 1453, 1551, 1769
HapII	CCGG	7 cut(s)	261, 770, 954, 1474, 1500, 1698, 2211
HgaI	GACGC	2 cut(s)	535, 2116
HhaI	GCGC	2 cut(s)	1065, 1796
Hin1I	GRCGYC	2 cut(s)	527, 2178
Hin1II	CATG	6 cut(s)	397, 407, 859, 1670, 2254, 2260
Hin6I	GCGC	2 cut(s)	1063, 1794
HinP1I	GCGC	2 cut(s)	1063, 1794
HincII	GTYRAC	1 cut(s)	2229
HindII	GTYRAC	1 cut(s)	2229
HindIII	AAGCTT	1 cut(s)	1113
HinfI	GANTC	9 cut(s)	581, 1382, 1487, 1630, 1670, 1676, 1835, 2082, 2399
HpaII	CCGG	7 cut(s)	261, 770, 954, 1474, 1500, 1698, 2211
HphI	GGTGA	1 cut(s)	2198
Hpy166II	GTNNAC	4 cut(s)	110, 794, 1514, 2229
Hpy188I	TCNGA	8 cut(s)	376, 570, 1012, 1052, 1363, 1675, 2310, 2404
Hpy8I	GTNNAC	4 cut(s)	110, 794, 1514, 2229
Hpy99I	CGWCG	2 cut(s)	759, 2183
HpyAV	CCTTC	9 cut(s)	213, 1241, 1387, 1464, 1614, 1633, 1696, 2273, 2342
HpyCH4III	ACNGT	3 cut(s)	451, 868, 1988
HpyCH4IV	ACGT	4 cut(s)	871, 1655, 1687, 2178
HpyF3I	CTNAG	9 cut(s)	30, 554, 591, 620, 1221, 1353, 1545, 1980, 1995
HpySE526I	ACGT	4 cut(s)	871, 1655, 1687, 2178
Hsp92I	GRCGYC	2 cut(s)	527, 2178
Hsp92II	CATG	6 cut(s)	397, 407, 859, 1670, 2254, 2260
HspAI	GCGC	2 cut(s)	1063, 1794
KpnI	GGTACC	2 cut(s)	303, 2243
KroI	GCCGGC	1 cut(s)	260
KroNI	GCCGGC	1 cut(s)	262
Ksp22I	TGATCA	2 cut(s)	73, 1929
Kzo9I	GATC	7 cut(s)	73, 829, 835, 1133, 1872, 1929, 2302
LguI	GCTCTTC	3 cut(s)	669, 1428, 2211
LmnI	GCTCC	3 cut(s)	688, 1433, 2420
LweI	GCATC	8 cut(s)	196, 456, 1009, 1249, 1387, 1751, 1925, 2336
MabI	ACCWGGT	1 cut(s)	733
MaeI	CTAG	8 cut(s)	699, 1274, 1427, 1509, 2174, 2270, 2358, 2431
MaeII	ACGT	4 cut(s)	871, 1655, 1687, 2178
MaeIII	GTNAC	3 cut(s)	61, 222, 2392
MalI	GATC	7 cut(s)	75, 831, 837, 1135, 1874, 1931, 2304
MboI	GATC	7 cut(s)	73, 829, 835, 1133, 1872, 1929, 2302
MflI	RGATCY	2 cut(s)	829, 1133
MhlI	GDGCHC	7 cut(s)	164, 355, 387, 796, 1506, 1516, 2206
MlyI	GAGTC	2 cut(s)	575, 1391
MmeI	TCCRAC	3 cut(s)	513, 915, 1123
Mph1103I	ATGCAT	1 cut(s)	1402
MroNI	GCCGGC	1 cut(s)	260
MroXI	GAANNNNTTC	1 cut(s)	564
MseI	TTAA	9 cut(s)	84, 170, 633, 684, 1311, 1748, 1854, 2105, 2154
MslI	CAYNNNNRTG	4 cut(s)	392, 2050, 2135, 2255
MspA1I	CMGCKG	2 cut(s)	1202, 1493
MspI	CCGG	7 cut(s)	261, 770, 954, 1474, 1500, 1698, 2211
MspR9I	CCNGG	6 cut(s)	735, 1450, 1501, 1699, 2211, 2212
MvaI	CCWGG	2 cut(s)	735, 1450
MvnI	CGCG	3 cut(s)	198, 484, 2183
NaeI	GCCGGC	1 cut(s)	262
NciI	CCSGG	4 cut(s)	1501, 1699, 2211, 2212
NdeI	CATATG	1 cut(s)	1576
NdeII	GATC	7 cut(s)	73, 829, 835, 1133, 1872, 1929, 2302
NgoMIV	GCCGGC	1 cut(s)	260
NheI	GCTAGC	1 cut(s)	698
NlaIII	CATG	6 cut(s)	397, 407, 859, 1670, 2254, 2260
NlaIV	GGNNCC	6 cut(s)	141, 301, 401, 1410, 2241, 2315
NmuCI	GTSAC	3 cut(s)	61, 222, 2392
NruI	TCGCGA	1 cut(s)	198
NsiI	ATGCAT	1 cut(s)	1402
NspI	RCATGY	1 cut(s)	397
OliI	CACNNNNGTG	1 cut(s)	2050
PagI	TCATGA	1 cut(s)	2250
PciI	ACATGT	1 cut(s)	393
PciSI	GCTCTTC	3 cut(s)	669, 1428, 2211
PdiI	GCCGGC	1 cut(s)	262
PdmI	GAANNNNTTC	1 cut(s)	564
PfeI	GAWTC	7 cut(s)	1487, 1630, 1670, 1676, 1835, 2082, 2399
Ple19I	CGATCG	1 cut(s)	1875
PleI	GAGTC	2 cut(s)	575, 1390
PmaCI	CACGTG	1 cut(s)	1688
PmlI	CACGTG	1 cut(s)	1688
PpsI	GAGTC	2 cut(s)	575, 1390
Ppu21I	YACGTR	1 cut(s)	1688
PscI	ACATGT	1 cut(s)	393
Psp1406I	AACGTT	1 cut(s)	1655
Psp6I	CCWGG	2 cut(s)	733, 1448
PspCI	CACGTG	1 cut(s)	1688
PspFI	CCCAGC	2 cut(s)	1120, 2077
PspGI	CCWGG	2 cut(s)	733, 1448
PspN4I	GGNNCC	6 cut(s)	141, 301, 401, 1410, 2241, 2315
PspPI	GGNCC	4 cut(s)	140, 956, 1549, 1695
PstI	CTGCAG	1 cut(s)	2296
PstNI	CAGNNNCTG	4 cut(s)	1205, 1262, 1979, 2402
PsuI	RGATCY	2 cut(s)	829, 1133
PvuI	CGATCG	1 cut(s)	1875
PvuII	CAGCTG	1 cut(s)	1493
RruI	TCGCGA	1 cut(s)	198
RsaI	GTAC	6 cut(s)	52, 301, 870, 1141, 1985, 2241
RsaNI	GTAC	6 cut(s)	51, 300, 869, 1140, 1984, 2240
RseI	CAYNNNNRTG	4 cut(s)	392, 2050, 2135, 2255
SalI	GTCGAC	1 cut(s)	2227
SapI	GCTCTTC	3 cut(s)	669, 1428, 2211
SaqAI	TTAA	9 cut(s)	84, 170, 633, 684, 1311, 1748, 1854, 2105, 2154
Sau3AI	GATC	7 cut(s)	73, 829, 835, 1133, 1872, 1929, 2302
Sau96I	GGNCC	4 cut(s)	140, 956, 1549, 1695
SchI	GAGTC	2 cut(s)	575, 1391
ScrFI	CCNGG	6 cut(s)	735, 1450, 1501, 1699, 2211, 2212
SduI	GDGCHC	7 cut(s)	164, 355, 387, 796, 1506, 1516, 2206
SexAI	ACCWGGT	1 cut(s)	733
SfaNI	GCATC	8 cut(s)	196, 456, 1009, 1249, 1387, 1751, 1925, 2336
SfcI	CTRYAG	1 cut(s)	2292
SinI	GGWCC	3 cut(s)	140, 956, 1695
SmaI	CCCGGG	1 cut(s)	2212
SmiMI	CAYNNNNRTG	4 cut(s)	392, 2050, 2135, 2255
SmlI	CTYRAG	1 cut(s)	703
SmoI	CTYRAG	1 cut(s)	703
SsiI	CCGC	7 cut(s)	482, 1202, 1770, 1914, 1960, 2183, 2194
SspI	AATATT	1 cut(s)	1804
SspMI	CTAG	8 cut(s)	699, 1274, 1427, 1509, 2174, 2270, 2358, 2431
StyD4I	CCNGG	6 cut(s)	733, 1448, 1499, 1697, 2209, 2210
StyI	CCWWGG	2 cut(s)	1827, 2232
TaaI	ACNGT	3 cut(s)	451, 868, 1988
TaiI	ACGT	4 cut(s)	874, 1658, 1690, 2181
TaqI	TCGA	2 cut(s)	1074, 2228
TaqII	GACCGA	1 cut(s)	768
TatI	WGTACW	1 cut(s)	1983
TauI	GCSGC	3 cut(s)	1205, 1772, 1963
TfiI	GAWTC	7 cut(s)	1487, 1630, 1670, 1676, 1835, 2082, 2399
Tru1I	TTAA	9 cut(s)	84, 170, 633, 684, 1311, 1748, 1854, 2105, 2154
Tru9I	TTAA	9 cut(s)	84, 170, 633, 684, 1311, 1748, 1854, 2105, 2154
TscAI	CASTG	6 cut(s)	70, 555, 1890, 1949, 1993, 2368
TseFI	GTSAC	3 cut(s)	61, 222, 2392
Tsp45I	GTSAC	3 cut(s)	61, 222, 2392
TspDTI	ATGAA	8 cut(s)	678, 1260, 1551, 1652, 2103, 2267, 2276, 2361
TspGWI	ACGGA	3 cut(s)	500, 1766, 2040
TspMI	CCCGGG	1 cut(s)	2210
TspRI	CASTG	6 cut(s)	70, 555, 1890, 1949, 1993, 2368
VneI	GTGCAC	2 cut(s)	792, 1512
VpaK11BI	GGWCC	3 cut(s)	140, 956, 1695
XapI	RAATTY	6 cut(s)	538, 626, 2090, 2189, 2353, 2367
XbaI	TCTAGA	1 cut(s)	1426
XceI	RCATGY	1 cut(s)	397
XmaI	CCCGGG	1 cut(s)	2210
XmiI	GTMKAC	1 cut(s)	2228
XmnI	GAANNNNTTC	1 cut(s)	564
XspI	CTAG	8 cut(s)	699, 1274, 1427, 1509, 2174, 2270, 2358, 2431
ZraI	GACGTC	1 cut(s)	2179
Zsp2I	ATGCAT	1 cut(s)	1402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.