Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004898

Physical Location & Seq

Genomic Coordinates Forward (+)

48422267 .. 48423105

Gene Structure 839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0379200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGAAGCGGGTAGGGCAGGATTGCCTGTTGTCACTATAAATCATGATGGTGGTGGCGGCTCAAATGTCAAGGATCTCCATCTGGAAGGCTTCAATGTTTATGTGGGTGGACGTGGTCTAATTATGGATGGTGCAGTAACACTTGGACTTATTGGAAGAAATGCTACTGCAAAAACAACGTTTCTTAGGCACTTGGCTATGCATGACATTGATAGCATTCGCCAAGTATTGCATGTGGAGCAAGAAGTGGCAGGTGATGATACATCAGCCTTGCAATGTGTTGTTAAAACTGATATTGAAAGAACCCAGCTTTTGGAAGAAGAAGATCGTCTCCTTGCTCAACAGAGAGAACTGGAGCTGGAGAAAGAAACAAGAAAGAGCAATGGAGAAATTGACAAAGATGCCATTGGACTGAGGCTTCAGATGCCAGTGGAGAAATTCTTGATAGATGTCTTTTTCTTACTTGTTCTGGTTTTTGTATGTATATTTGTTAAATCAGAGGAGTATAGTTACGATTTTCGTAAACAAGCCTTCTTTGATTCGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006810 GO:0006888 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009832 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0017076 GO:0019001 GO:0022622 GO:0030029 GO:0030036 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032989 GO:0035639 GO:0036094 GO:0040007 GO:0042546 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060560 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0090558 GO:0090627 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0099402 GO:1901265 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RHD3

Protein Analysis

182

Amino Acids

20.39

Weight (kDa)

5.04

Isoelectric Point (pI)

41.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13870 AT3G13870
fragaria_vesca	FvH4_6g33350 FvH4_6g33350 FvH4_6g33350 FvH4_6g33350
malus_domestica	MD09G1193400.v1.1 MD17G1174200.v1.1
prunus_persica	Prupe.3G049800_v2.0.a1
pyrus_communis	pycom09g10990 pycom17g17830
rosa_chinensis	RchiOBHm_Chr2g0143201 RchiOBHm_Chr2g0169871
rosa_laevigata	RLG00000020013
rosa_multiflora	Rmu_co8092052.1_g000001 Rmu_sc0000181.1_g000004 Rmu_sc0003950.1_g000012
rosa_roxburghii	Rroxscaffold_2G00102050 Rroxscaffold_5G00359600 Rroxscaffold_7G00190950 Rroxscaffold_7G00191100
rosa_rugosa	Rorug02G0379200
rosa_samantha	Rh1BG269400 Rh2AG432000 Rh2BG440600 Rh2CG385100 Rh2CG417900 Rh2DG450800 Rh7AG446900
rosa_wichuraiana	Rw2G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	242
Acc36I	ACCTGC	1 cut(s)	242
AccB7I	CCANNNNNTGG	1 cut(s)	313
AciI	CCGC	2 cut(s)	8, 57
AclI	AACGTT	1 cut(s)	179
AclWI	GGATC	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	437
AcuI	CTGAAG	1 cut(s)	404
AfiI	CCNNNNNNNGG	1 cut(s)	313
AgsI	TTSAA	2 cut(s)	94, 299
AjiI	CACGTC	1 cut(s)	113
AluBI	AGCT	2 cut(s)	310, 358
AluI	AGCT	2 cut(s)	310, 358
Alw26I	GTCTC	1 cut(s)	335
AlwI	GGATC	1 cut(s)	81
ApoI	RAATTY	1 cut(s)	437
AsuHPI	GGTGA	1 cut(s)	266
BarI	GAAGNNNNNNTAC	2 cut(s)	148, 180
BccI	CCATC	3 cut(s)	41, 87, 122
BcoDI	GTCTC	1 cut(s)	335
BfuAI	ACCTGC	1 cut(s)	242
BisI	GCNGC	1 cut(s)	58
BlsI	GCNGC	1 cut(s)	59
BmgBI	CACGTC	1 cut(s)	113
BmsI	GCATC	2 cut(s)	391, 414
BpmI	CTGGAG	2 cut(s)	374, 380
BsaBI	GATNNNNATC	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse1I	ACTGG	2 cut(s)	357, 428
Bse3DI	GCAATG	2 cut(s)	281, 388
Bse8I	GATNNNNATC	1 cut(s)	78
BseGI	GGATG	1 cut(s)	133
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMI	GCAATG	2 cut(s)	281, 388
BseMII	CTCAG	1 cut(s)	404
BseNI	ACTGG	2 cut(s)	357, 428
BseRI	GAGGAG	1 cut(s)	515
BseYI	CCCAGC	1 cut(s)	306
BsgI	GTGCAG	1 cut(s)	153
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmAI	GTCTC	1 cut(s)	335
BsmBI	CGTCTC	1 cut(s)	335
BsmI	GAATGC	1 cut(s)	216
Bsp143I	GATC	2 cut(s)	73, 325
BspACI	CCGC	2 cut(s)	8, 57
BspCNI	CTCAG	1 cut(s)	405
BspHI	TCATGA	1 cut(s)	43
BspMI	ACCTGC	1 cut(s)	242
BspPI	GGATC	1 cut(s)	81
BsrDI	GCAATG	2 cut(s)	281, 388
BsrI	ACTGG	2 cut(s)	357, 428
BssMI	GATC	2 cut(s)	73, 325
BstDEI	CTNAG	2 cut(s)	185, 413
BstF5I	GGATG	1 cut(s)	133
BstKTI	GATC	2 cut(s)	76, 328
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	2 cut(s)	73, 325
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 238, 424
BstNSI	RCATGY	1 cut(s)	236
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BtrI	CACGTC	1 cut(s)	113
BtsCI	GGATG	1 cut(s)	133
BtsIMutI	CAGTG	1 cut(s)	435
BveI	ACCTGC	1 cut(s)	242
CciI	TCATGA	1 cut(s)	43
CviAII	CATG	3 cut(s)	44, 203, 233
CviJI	RGCY	8 cut(s)	60, 90, 197, 269, 310, 358, 418, 530
CviKI_1	RGCY	8 cut(s)	60, 90, 197, 269, 310, 358, 418, 530
DdeI	CTNAG	2 cut(s)	185, 413
DpnI	GATC	2 cut(s)	75, 327
DpnII	GATC	2 cut(s)	73, 325
Eco57I	CTGAAG	1 cut(s)	404
EcoT22I	ATGCAT	1 cut(s)	204
Esp3I	CGTCTC	1 cut(s)	335
FaeI	CATG	3 cut(s)	47, 206, 236
FatI	CATG	3 cut(s)	43, 202, 232
Fnu4HI	GCNGC	1 cut(s)	58
FokI	GGATG	1 cut(s)	140
Fsp4HI	GCNGC	1 cut(s)	58
GluI	GCNGC	1 cut(s)	58
GsaI	CCCAGC	1 cut(s)	310
GsuI	CTGGAG	2 cut(s)	374, 380
Hin1II	CATG	3 cut(s)	47, 206, 236
HinfI	GANTC	1 cut(s)	539
HphI	GGTGA	1 cut(s)	266
Hpy166II	GTNNAC	2 cut(s)	110, 524
Hpy188I	TCNGA	2 cut(s)	423, 499
Hpy188III	TCNNGA	3 cut(s)	44, 83, 442
Hpy8I	GTNNAC	2 cut(s)	110, 524
HpyAV	CCTTC	2 cut(s)	80, 541
HpyCH4IV	ACGT	2 cut(s)	112, 179
HpyCH4V	TGCA	5 cut(s)	134, 170, 202, 232, 274
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 238, 424
HpyF3I	CTNAG	2 cut(s)	185, 413
HpySE526I	ACGT	2 cut(s)	112, 179
Hsp92II	CATG	3 cut(s)	47, 206, 236
Kzo9I	GATC	2 cut(s)	73, 325
LmnI	GCTCC	2 cut(s)	238, 355
LpnPI	CCDG	9 cut(s)	3, 39, 68, 237, 320, 338, 344, 441, 455
LweI	GCATC	2 cut(s)	391, 414
MaeII	ACGT	2 cut(s)	112, 179
MaeIII	GTNAC	3 cut(s)	31, 136, 509
MalI	GATC	2 cut(s)	75, 327
MboI	GATC	2 cut(s)	73, 325
MboII	GAAGA	4 cut(s)	168, 329, 332, 335
MflI	RGATCY	1 cut(s)	73
MluCI	AATT	3 cut(s)	120, 390, 437
MnlI	CCTC	2 cut(s)	408, 493
Mph1103I	ATGCAT	1 cut(s)	204
MseI	TTAA	3 cut(s)	285, 492, 547
MslI	CAYNNNNRTG	1 cut(s)	48
Mva1269I	GAATGC	1 cut(s)	216
MwoI	GCNNNNNNNGC	3 cut(s)	14, 238, 424
NdeII	GATC	2 cut(s)	73, 325
NlaIII	CATG	3 cut(s)	47, 206, 236
NmuCI	GTSAC	1 cut(s)	31
NsiI	ATGCAT	1 cut(s)	204
NspI	RCATGY	1 cut(s)	236
PagI	TCATGA	1 cut(s)	43
PaqCI	CACCTGC	1 cut(s)	242
PctI	GAATGC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	539
PflFI	GACNNNGTC	1 cut(s)	114
PflMI	CCANNNNNTGG	1 cut(s)	313
PkrI	GCNGC	1 cut(s)	59
Psp1406I	AACGTT	1 cut(s)	179
PspFI	CCCAGC	1 cut(s)	306
PsuI	RGATCY	1 cut(s)	73
PsyI	GACNNNGTC	1 cut(s)	114
RseI	CAYNNNNRTG	1 cut(s)	48
SaqAI	TTAA	3 cut(s)	285, 492, 547
SatI	GCNGC	1 cut(s)	58
Sau3AI	GATC	2 cut(s)	73, 325
SetI	ASST	5 cut(s)	115, 182, 256, 312, 360
SfaNI	GCATC	2 cut(s)	391, 414
SmiMI	CAYNNNNRTG	1 cut(s)	48
Sse9I	AATT	3 cut(s)	120, 390, 437
SsiI	CCGC	2 cut(s)	8, 57
TaiI	ACGT	2 cut(s)	115, 182
TasI	AATT	3 cut(s)	120, 390, 437
TauI	GCSGC	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	539
Tru1I	TTAA	3 cut(s)	285, 492, 547
Tru9I	TTAA	3 cut(s)	285, 492, 547
TscAI	CASTG	1 cut(s)	435
TseFI	GTSAC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	31
TspRI	CASTG	1 cut(s)	435
Tth111I	GACNNNGTC	1 cut(s)	114
Van91I	CCANNNNNTGG	1 cut(s)	313
XapI	RAATTY	1 cut(s)	437
XceI	RCATGY	1 cut(s)	236
Zsp2I	ATGCAT	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.