Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004898

Physical Location & Seq

Genomic Coordinates Forward (+)

60673481 .. 60679010

Gene Structure 5530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG446900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGAGAAAGTGTGATGAAGCTGCTGCCATGGTAGTTGAAATCAATCTGTCTCCAAAGATGATGAAACTGAGGTCAAGATACAAAACTAGAAAGACAGATATTGATTTGGATGAAGCTGCTGCCGTCTTTGTCGATGAAGCCAACAAGTGTAATAACAATTGGCTACCACCTCCTTGGGCTATTCTTGCCTTGGTTGTCCTCGGATTTAATGAATTCATGAATCATGATAGTCTTAAGAAATCCTTTGTATCTGCTGGTCATCTTCATTGGCTTTTTACTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006810 GO:0006888 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009832 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0017076 GO:0019001 GO:0022622 GO:0030029 GO:0030036 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032989 GO:0035639 GO:0036094 GO:0040007 GO:0042546 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060560 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0090558 GO:0090627 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0099402 GO:1901265 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RHD3

Protein Analysis

94

Amino Acids

10.76

Weight (kDa)

7.81

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sey1_3HB	PF20428	41 - 73	8e-09	Sey1 three-helix bundle domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13870 AT3G13870
fragaria_vesca	FvH4_6g33350 FvH4_6g33350 FvH4_6g33350 FvH4_6g33350
malus_domestica	MD09G1193400.v1.1 MD17G1174200.v1.1
prunus_persica	Prupe.3G049800_v2.0.a1
pyrus_communis	pycom09g10990 pycom17g17830
rosa_chinensis	RchiOBHm_Chr2g0143201 RchiOBHm_Chr2g0169871
rosa_laevigata	RLG00000020013
rosa_multiflora	Rmu_co8092052.1_g000001 Rmu_sc0000181.1_g000004 Rmu_sc0003950.1_g000012
rosa_roxburghii	Rroxscaffold_2G00102050 Rroxscaffold_5G00359600 Rroxscaffold_7G00190950 Rroxscaffold_7G00191100
rosa_rugosa	Rorug02G0379200
rosa_samantha	Rh1BG269400 Rh2AG432000 Rh2BG440600 Rh2CG385100 Rh2CG417900 Rh2DG450800 Rh7AG446900
rosa_wichuraiana	Rw2G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	212
AflII	CTTAAG	1 cut(s)	233
AgsI	TTSAA	1 cut(s)	38
AluBI	AGCT	2 cut(s)	20, 116
AluI	AGCT	2 cut(s)	20, 116
Alw26I	GTCTC	1 cut(s)	54
ApeKI	GCWGC	4 cut(s)	20, 23, 116, 119
ApoI	RAATTY	1 cut(s)	212
BbvI	GCAGC	4 cut(s)	7, 10, 103, 106
BceAI	ACGGC	1 cut(s)	107
BcoDI	GTCTC	1 cut(s)	54
BfaI	CTAG	1 cut(s)	87
BfrI	CTTAAG	1 cut(s)	233
BisI	GCNGC	4 cut(s)	21, 24, 117, 120
BlsI	GCNGC	4 cut(s)	22, 25, 118, 121
BsaJI	CCNNGG	4 cut(s)	27, 173, 189, 199
BseDI	CCNNGG	4 cut(s)	27, 173, 189, 199
BseGI	GGATG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	59
BseXI	GCAGC	4 cut(s)	7, 10, 103, 106
BsmAI	GTCTC	1 cut(s)	54
Bsp19I	CCATGG	1 cut(s)	27
BspCNI	CTCAG	1 cut(s)	60
BspHI	TCATGA	2 cut(s)	216, 223
BspTI	CTTAAG	1 cut(s)	233
BssECI	CCNNGG	4 cut(s)	27, 173, 189, 199
BssT1I	CCWWGG	3 cut(s)	27, 173, 189
BstAFI	CTTAAG	1 cut(s)	233
BstDEI	CTNAG	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	115
BstMAI	GTCTC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstV1I	GCAGC	4 cut(s)	7, 10, 103, 106
BstXI	CCANNNNNNTGG	1 cut(s)	174
BtgI	CCRYGG	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	115
CciI	TCATGA	2 cut(s)	216, 223
CviAII	CATG	3 cut(s)	28, 217, 224
CviJI	RGCY	6 cut(s)	20, 116, 140, 163, 179, 271
CviKI_1	RGCY	6 cut(s)	20, 116, 140, 163, 179, 271
DdeI	CTNAG	1 cut(s)	68
Eco130I	CCWWGG	3 cut(s)	27, 173, 189
EcoRI	GAATTC	1 cut(s)	212
EcoT14I	CCWWGG	3 cut(s)	27, 173, 189
ErhI	CCWWGG	3 cut(s)	27, 173, 189
FaeI	CATG	3 cut(s)	31, 220, 227
FaiI	YATR	3 cut(s)	29, 218, 225
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FatI	CATG	3 cut(s)	27, 216, 223
Fnu4HI	GCNGC	4 cut(s)	21, 24, 117, 120
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	4 cut(s)	21, 24, 117, 120
FspBI	CTAG	1 cut(s)	87
GluI	GCNGC	4 cut(s)	21, 24, 117, 120
Hin1II	CATG	3 cut(s)	31, 220, 227
HinfI	GANTC	1 cut(s)	220
Hpy188I	TCNGA	1 cut(s)	203
Hpy188III	TCNNGA	3 cut(s)	75, 217, 224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpyF3I	CTNAG	1 cut(s)	68
Hsp92II	CATG	3 cut(s)	31, 220, 227
LpnPI	CCDG	1 cut(s)	240
Lsp1109I	GCAGC	4 cut(s)	7, 10, 103, 106
MaeI	CTAG	1 cut(s)	87
MboII	GAAGA	1 cut(s)	254
MfeI	CAATTG	1 cut(s)	157
MluCI	AATT	2 cut(s)	157, 212
MnlI	CCTC	3 cut(s)	63, 180, 209
MseI	TTAA	3 cut(s)	207, 234, 283
MspCI	CTTAAG	1 cut(s)	233
MunI	CAATTG	1 cut(s)	157
MwoI	GCNNNNNNNGC	1 cut(s)	185
NcoI	CCATGG	1 cut(s)	27
NlaIII	CATG	3 cut(s)	31, 220, 227
PagI	TCATGA	2 cut(s)	216, 223
PfeI	GAWTC	1 cut(s)	220
PkrI	GCNGC	4 cut(s)	22, 25, 118, 121
SaqAI	TTAA	3 cut(s)	207, 234, 283
SatI	GCNGC	4 cut(s)	21, 24, 117, 120
SetI	ASST	4 cut(s)	22, 74, 118, 172
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	2 cut(s)	157, 212
SspMI	CTAG	1 cut(s)	87
StyI	CCWWGG	3 cut(s)	27, 173, 189
TaqI	TCGA	1 cut(s)	132
TasI	AATT	2 cut(s)	157, 212
TfiI	GAWTC	1 cut(s)	220
Tru1I	TTAA	3 cut(s)	207, 234, 283
Tru9I	TTAA	3 cut(s)	207, 234, 283
TseI	GCWGC	4 cut(s)	20, 23, 116, 119
TspDTI	ATGAA	8 cut(s)	30, 77, 126, 150, 205, 225, 233, 254
Vha464I	CTTAAG	1 cut(s)	233
XapI	RAATTY	1 cut(s)	212
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.