Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000181.1

Orthogroup ID

OG0004898

Physical Location & Seq

Genomic Coordinates Forward (+)

12357 .. 16013

Gene Structure 3657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000181.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

atggtggtggtttgtgcggtgaatgggtttgtttgtttcaattttggtcgtgggcaccgctctggttggagtggtgacgtatggtggttggatctagatgcgattgcaagtgcacagtggtggtgcagcgacggaagggttgggctcttagtttccttcatttgttgggggttaagcacgcaatccaggggcgatatggatggtgaagaattggttgcttggcaaagattatggtgtgtgggcgatggtggtggggagatggagtttgtctgtcaggggcggtgttatcctcctttgcctgggttcactccaactttcttcctcatataccaacccaaattcccacacatctcctcctcctcgctctcaaatccccacaccttctcctcgtcgccttcaaacgagtgtcaattgaagagatgcagaagactacacctttgccaaagcactttaagacttcagatctccgactccagtgaatattactcaaatcgagggcgagatcatcaggaagccttaggactcactgtcgttacaggactcaccgtcgtcatacgcggaggtgagcaccaccggtgccaccagcaagctcaacgaggtcgacatctatgccgtaattctccgatttgttcgatggaggaggaggaagcacttgtcagggaggccatggcagcggaagctaacaagcgtagcaacaattggctaccaccttcttgggctattcttgccttggttgtcctcggatttaatgaattcagaaatcatgacagtcttaagcttccgggacttctacctttgtccactaagttggtgccaactatcataaacatgatgaagggattaccggatgaagggaaagcagctactgtggataacaatcgtcaaagaaaccctacagtagcatcaaaaggcataagcaatggagcaaatgcaggaggattccctgaagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006810 GO:0006888 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009832 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0017076 GO:0019001 GO:0022622 GO:0030029 GO:0030036 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032989 GO:0035639 GO:0036094 GO:0040007 GO:0042546 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060560 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0090558 GO:0090627 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0099402 GO:1901265 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RHD3

Protein Analysis

317

Amino Acids

35.13

Weight (kDa)

7.11

Isoelectric Point (pI)

47.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13870 AT3G13870
fragaria_vesca	FvH4_6g33350 FvH4_6g33350 FvH4_6g33350 FvH4_6g33350
malus_domestica	MD09G1193400.v1.1 MD17G1174200.v1.1
prunus_persica	Prupe.3G049800_v2.0.a1
pyrus_communis	pycom09g10990 pycom17g17830
rosa_chinensis	RchiOBHm_Chr2g0143201 RchiOBHm_Chr2g0169871
rosa_laevigata	RLG00000020013
rosa_multiflora	Rmu_co8092052.1_g000001 Rmu_sc0000181.1_g000004 Rmu_sc0003950.1_g000012
rosa_roxburghii	Rroxscaffold_2G00102050 Rroxscaffold_5G00359600 Rroxscaffold_7G00190950 Rroxscaffold_7G00191100
rosa_rugosa	Rorug02G0379200
rosa_samantha	Rh1BG269400 Rh2AG432000 Rh2BG440600 Rh2CG385100 Rh2CG417900 Rh2DG450800 Rh7AG446900
rosa_wichuraiana	Rw2G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	54, 576, 811
AccBSI	CCGCTC	1 cut(s)	60
AccI	GTMKAC	1 cut(s)	601
AccII	CGCG	1 cut(s)	558
AciI	CCGC	5 cut(s)	17, 58, 280, 558, 674
AclWI	GGATC	1 cut(s)	99
AcsI	RAATTY	2 cut(s)	338, 752
AcuI	CTGAAG	1 cut(s)	443
AfiI	CCNNNNNNNGG	2 cut(s)	299, 851
AflII	CTTAAG	1 cut(s)	773
AgeI	ACCGGT	1 cut(s)	573
AgsI	TTSAA	3 cut(s)	40, 399, 415
AhdI	GACNNNNNGTC	2 cut(s)	527, 545
AjnI	CCWGG	2 cut(s)	185, 298
AleI	CACNNNNGTG	1 cut(s)	118
AluBI	AGCT	4 cut(s)	590, 680, 778, 863
AluI	AGCT	4 cut(s)	590, 680, 778, 863
Alw21I	GWGCWC	2 cut(s)	115, 570
Alw44I	GTGCAC	1 cut(s)	111
AlwI	GGATC	1 cut(s)	99
AlwNI	CAGNNNCTG	1 cut(s)	866
AoxI	GGCC	1 cut(s)	663
ApaLI	GTGCAC	1 cut(s)	111
ApeKI	GCWGC	3 cut(s)	126, 671, 860
ApoI	RAATTY	2 cut(s)	338, 752
ArsI	GACNNNNNNTTYG	2 cut(s)	420, 452
AsiGI	ACCGGT	1 cut(s)	573
AsuC2I	CCSGG	1 cut(s)	783
AsuHPI	GGTGA	5 cut(s)	31, 86, 215, 535, 575
AxyI	CCTNAGG	1 cut(s)	517
BaeGI	GKGCMC	2 cut(s)	57, 115
BanI	GGYRCC	3 cut(s)	54, 576, 811
BanII	GRGCYC	1 cut(s)	147
BbsI	GAAGAC	1 cut(s)	433
Bbv12I	GWGCWC	2 cut(s)	115, 570
BbvI	GCAGC	3 cut(s)	138, 683, 872
BccI	CCATC	4 cut(s)	194, 239, 253, 628
BceAI	ACGGC	1 cut(s)	597
BcgI	CGANNNNNNTGC	2 cut(s)	591, 625
BciT130I	CCWGG	2 cut(s)	187, 300
BcnI	CCSGG	1 cut(s)	783
BfaI	CTAG	1 cut(s)	95
BfmI	CTRYAG	1 cut(s)	894
BfrI	CTTAAG	1 cut(s)	773
BglII	AGATCT	1 cut(s)	462
BisI	GCNGC	3 cut(s)	127, 672, 861
BlsI	GCNGC	3 cut(s)	128, 673, 862
Bme1390I	CCNGG	3 cut(s)	187, 300, 783
BmeRI	GACNNNNNGTC	2 cut(s)	527, 545
BmiI	GGNNCC	3 cut(s)	56, 578, 813
BmrFI	CCNGG	3 cut(s)	187, 300, 783
BmsI	GCATC	3 cut(s)	88, 410, 911
BpiI	GAAGAC	1 cut(s)	433
BpmI	CTGGAG	1 cut(s)	457
BpuMI	CCSGG	1 cut(s)	783
BsaBI	GATNNNNATC	1 cut(s)	876
BsaJI	CCNNGG	5 cut(s)	186, 299, 666, 729, 739
BsaWI	WCCGGW	2 cut(s)	573, 844
BsaXI	ACNNNNNCTCC	6 cut(s)	248, 278, 338, 368, 368, 398
Bsc4I	CCNNNNNNNGG	2 cut(s)	299, 851
Bse118I	RCCGGY	1 cut(s)	573
Bse1I	ACTGG	1 cut(s)	474
Bse21I	CCTNAGG	1 cut(s)	517
Bse3DI	GCAATG	1 cut(s)	925
Bse8I	GATNNNNATC	1 cut(s)	876
BseBI	CCWGG	2 cut(s)	187, 300
BseDI	CCNNGG	5 cut(s)	186, 299, 666, 729, 739
BseGI	GGATG	2 cut(s)	205, 853
BseJI	GATNNNNATC	1 cut(s)	876
BseLI	CCNNNNNNNGG	2 cut(s)	299, 851
BseMI	GCAATG	1 cut(s)	925
BseNI	ACTGG	1 cut(s)	474
BseRI	GAGGAG	6 cut(s)	343, 346, 349, 376, 653, 656
BseSI	GKGCMC	2 cut(s)	57, 115
BseXI	GCAGC	3 cut(s)	138, 683, 872
BsgI	GTGCAG	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	558
BshFI	GGCC	1 cut(s)	665
BshNI	GGYRCC	3 cut(s)	54, 576, 811
BshTI	ACCGGT	1 cut(s)	573
BsiHKAI	GWGCWC	2 cut(s)	115, 570
BsiSI	CCGG	3 cut(s)	574, 782, 845
BslFI	GGGAC	1 cut(s)	798
BslI	CCNNNNNNNGG	2 cut(s)	299, 851
BsmFI	GGGAC	1 cut(s)	798
BsnI	GGCC	1 cut(s)	665
Bsp1286I	GDGCHC	4 cut(s)	57, 115, 147, 570
Bsp143I	GATC	3 cut(s)	91, 462, 502
Bsp19I	CCATGG	1 cut(s)	666
BspACI	CCGC	5 cut(s)	17, 58, 280, 558, 674
BspANI	GGCC	1 cut(s)	665
BspFNI	CGCG	1 cut(s)	558
BspHI	TCATGA	1 cut(s)	763
BspLI	GGNNCC	3 cut(s)	56, 578, 813
BspPI	GGATC	1 cut(s)	99
BspT107I	GGYRCC	3 cut(s)	54, 576, 811
BspTI	CTTAAG	1 cut(s)	773
BsrBI	CCGCTC	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	925
BsrFI	RCCGGY	1 cut(s)	573
BsrI	ACTGG	1 cut(s)	474
BssAI	RCCGGY	1 cut(s)	573
BssECI	CCNNGG	5 cut(s)	186, 299, 666, 729, 739
BssMI	GATC	3 cut(s)	91, 462, 502
BssT1I	CCWWGG	2 cut(s)	666, 729
Bst2UI	CCWGG	2 cut(s)	187, 300
Bst4CI	ACNGT	6 cut(s)	117, 529, 547, 770, 868, 898
Bst6I	CTCTTC	2 cut(s)	410, 942
BstAFI	CTTAAG	1 cut(s)	773
BstC8I	GCNNGC	2 cut(s)	179, 588
BstDEI	CTNAG	3 cut(s)	148, 517, 804
BstDSI	CCRYGG	1 cut(s)	666
BstF5I	GGATG	2 cut(s)	205, 853
BstFNI	CGCG	1 cut(s)	558
BstKTI	GATC	3 cut(s)	94, 465, 505
BstMBI	GATC	3 cut(s)	91, 462, 502
BstMWI	GCNNNNNNNGC	3 cut(s)	671, 677, 725
BstNI	CCWGG	2 cut(s)	187, 300
BstSCI	CCNGG	3 cut(s)	185, 298, 781
BstSFI	CTRYAG	1 cut(s)	894
BstSLI	GKGCMC	2 cut(s)	57, 115
BstUI	CGCG	1 cut(s)	558
BstV1I	GCAGC	3 cut(s)	138, 683, 872
BstV2I	GAAGAC	1 cut(s)	433
BstX2I	RGATCY	2 cut(s)	91, 462
BstXI	CCANNNNNNTGG	2 cut(s)	714, 808
BstYI	RGATCY	2 cut(s)	91, 462
Bsu36I	CCTNAGG	1 cut(s)	517
BsuRI	GGCC	1 cut(s)	665
BtgI	CCRYGG	1 cut(s)	666
BtgZI	GCGATG	1 cut(s)	258
BtsCI	GGATG	2 cut(s)	205, 853
BtsIMutI	CAGTG	3 cut(s)	122, 481, 525
Cac8I	GCNNGC	2 cut(s)	179, 588
CaiI	CAGNNNCTG	1 cut(s)	866
CciI	TCATGA	1 cut(s)	763
Cfr10I	RCCGGY	1 cut(s)	573
CspAI	ACCGGT	1 cut(s)	573
CviAII	CATG	3 cut(s)	667, 764, 829
CviJI	RGCY	9 cut(s)	145, 515, 590, 665, 680, 703, 719, 778, 863
CviKI_1	RGCY	9 cut(s)	145, 515, 590, 665, 680, 703, 719, 778, 863
DdeI	CTNAG	3 cut(s)	148, 517, 804
DpnI	GATC	3 cut(s)	93, 464, 504
DpnII	GATC	3 cut(s)	91, 462, 502
DriI	GACNNNNNGTC	2 cut(s)	527, 545
Eam1104I	CTCTTC	2 cut(s)	410, 942
Eam1105I	GACNNNNNGTC	2 cut(s)	527, 545
EarI	CTCTTC	2 cut(s)	410, 942
Eco130I	CCWWGG	2 cut(s)	666, 729
Eco24I	GRGCYC	1 cut(s)	147
Eco57I	CTGAAG	1 cut(s)	443
Eco81I	CCTNAGG	1 cut(s)	517
EcoRI	GAATTC	1 cut(s)	752
EcoRII	CCWGG	2 cut(s)	185, 298
EcoT14I	CCWWGG	2 cut(s)	666, 729
EcoT38I	GRGCYC	1 cut(s)	147
ErhI	CCWWGG	2 cut(s)	666, 729
FaeI	CATG	3 cut(s)	670, 767, 832
FaqI	GGGAC	1 cut(s)	798
FatI	CATG	3 cut(s)	666, 763, 828
FblI	GTMKAC	1 cut(s)	601
Fnu4HI	GCNGC	3 cut(s)	127, 672, 861
FokI	GGATG	2 cut(s)	212, 860
FriOI	GRGCYC	1 cut(s)	147
Fsp4HI	GCNGC	3 cut(s)	127, 672, 861
FspBI	CTAG	1 cut(s)	95
GluI	GCNGC	3 cut(s)	127, 672, 861
GsuI	CTGGAG	1 cut(s)	457
HaeIII	GGCC	1 cut(s)	665
HapII	CCGG	3 cut(s)	574, 782, 845
Hin1II	CATG	3 cut(s)	670, 767, 832
HincII	GTYRAC	1 cut(s)	602
HindII	GTYRAC	1 cut(s)	602
HindIII	AAGCTT	1 cut(s)	776
HinfI	GANTC	4 cut(s)	470, 522, 540, 939
HpaII	CCGG	3 cut(s)	574, 782, 845
HphI	GGTGA	5 cut(s)	31, 86, 215, 535, 575
Hpy166II	GTNNAC	4 cut(s)	113, 306, 602, 801
Hpy188I	TCNGA	5 cut(s)	462, 469, 624, 743, 758
Hpy188III	TCNNGA	3 cut(s)	95, 509, 764
Hpy8I	GTNNAC	4 cut(s)	113, 306, 602, 801
Hpy99I	CGWCG	3 cut(s)	134, 394, 551
HpyAV	CCTTC	7 cut(s)	129, 166, 391, 405, 720, 829, 845
HpyCH4III	ACNGT	6 cut(s)	117, 529, 547, 770, 868, 898
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	5 cut(s)	107, 113, 126, 423, 932
HpyF10VI	GCNNNNNNNGC	3 cut(s)	671, 677, 725
HpyF3I	CTNAG	3 cut(s)	148, 517, 804
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	3 cut(s)	670, 767, 832
Kzo9I	GATC	3 cut(s)	91, 462, 502
LmnI	GCTCC	1 cut(s)	923
Lsp1109I	GCAGC	3 cut(s)	138, 683, 872
LweI	GCATC	3 cut(s)	88, 410, 911
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	2 cut(s)	74, 532
MalI	GATC	3 cut(s)	93, 464, 504
MbiI	CCGCTC	1 cut(s)	60
MboI	GATC	3 cut(s)	91, 462, 502
MboII	GAAGA	4 cut(s)	218, 310, 427, 438
MfeI	CAATTG	2 cut(s)	410, 697
MflI	RGATCY	2 cut(s)	91, 462
MhlI	GDGCHC	4 cut(s)	57, 115, 147, 570
MluCI	AATT	7 cut(s)	40, 209, 338, 410, 616, 697, 752
MlyI	GAGTC	3 cut(s)	464, 516, 534
MmeI	TCCRAC	4 cut(s)	47, 69, 335, 492
MseI	TTAA	4 cut(s)	173, 452, 747, 774
MslI	CAYNNNNRTG	2 cut(s)	118, 827
MspA1I	CMGCKG	1 cut(s)	674
MspCI	CTTAAG	1 cut(s)	773
MspI	CCGG	3 cut(s)	574, 782, 845
MspR9I	CCNGG	3 cut(s)	187, 300, 783
MunI	CAATTG	2 cut(s)	410, 697
MvaI	CCWGG	2 cut(s)	187, 300
MvnI	CGCG	1 cut(s)	558
MwoI	GCNNNNNNNGC	3 cut(s)	671, 677, 725
NciI	CCSGG	1 cut(s)	783
NcoI	CCATGG	1 cut(s)	666
NdeII	GATC	3 cut(s)	91, 462, 502
NlaIII	CATG	3 cut(s)	670, 767, 832
NlaIV	GGNNCC	3 cut(s)	56, 578, 813
NmuCI	GTSAC	1 cut(s)	74
OliI	CACNNNNGTG	1 cut(s)	118
PagI	TCATGA	1 cut(s)	763
PfeI	GAWTC	1 cut(s)	939
PfoI	TCCNGGA	1 cut(s)	781
PinAI	ACCGGT	1 cut(s)	573
PkrI	GCNGC	3 cut(s)	128, 673, 862
PleI	GAGTC	3 cut(s)	464, 516, 534
PpsI	GAGTC	3 cut(s)	464, 516, 534
Psp6I	CCWGG	2 cut(s)	185, 298
PspGI	CCWGG	2 cut(s)	185, 298
PspN4I	GGNNCC	3 cut(s)	56, 578, 813
PstNI	CAGNNNCTG	1 cut(s)	866
PsuI	RGATCY	2 cut(s)	91, 462
RseI	CAYNNNNRTG	2 cut(s)	118, 827
SalI	GTCGAC	1 cut(s)	600
SaqAI	TTAA	4 cut(s)	173, 452, 747, 774
SatI	GCNGC	3 cut(s)	127, 672, 861
Sau3AI	GATC	3 cut(s)	91, 462, 502
SchI	GAGTC	3 cut(s)	464, 516, 534
ScrFI	CCNGG	3 cut(s)	187, 300, 783
SduI	GDGCHC	4 cut(s)	57, 115, 147, 570
SfaNI	GCATC	3 cut(s)	88, 410, 911
SfcI	CTRYAG	1 cut(s)	894
SgrAI	CRCCGGYG	1 cut(s)	573
SmiMI	CAYNNNNRTG	2 cut(s)	118, 827
SmlI	CTYRAG	1 cut(s)	773
SmoI	CTYRAG	1 cut(s)	773
Sse9I	AATT	7 cut(s)	40, 209, 338, 410, 616, 697, 752
SsiI	CCGC	5 cut(s)	17, 58, 280, 558, 674
SspI	AATATT	1 cut(s)	482
SspMI	CTAG	1 cut(s)	95
StyD4I	CCNGG	3 cut(s)	185, 298, 781
StyI	CCWWGG	2 cut(s)	666, 729
TaaI	ACNGT	6 cut(s)	117, 529, 547, 770, 868, 898
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	3 cut(s)	493, 601, 632
TasI	AATT	7 cut(s)	40, 209, 338, 410, 616, 697, 752
TfiI	GAWTC	1 cut(s)	939
Tru1I	TTAA	4 cut(s)	173, 452, 747, 774
Tru9I	TTAA	4 cut(s)	173, 452, 747, 774
TscAI	CASTG	3 cut(s)	122, 481, 532
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	3 cut(s)	126, 671, 860
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	4 cut(s)	148, 765, 848, 864
TspGWI	ACGGA	1 cut(s)	147
TspRI	CASTG	3 cut(s)	122, 481, 532
Vha464I	CTTAAG	1 cut(s)	773
VneI	GTGCAC	1 cut(s)	111
XapI	RAATTY	2 cut(s)	338, 752
XbaI	TCTAGA	1 cut(s)	94
XcmI	CCANNNNNNNNNTGG	1 cut(s)	193
XmiI	GTMKAC	1 cut(s)	601
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.