Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004898

Physical Location & Seq

Genomic Coordinates Forward (+)

31589857 .. 31592916

Gene Structure 3060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00191100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGCCTTGGGACTCACGGTCGTTACGGGAATCACCATTGTCATACGTGGAGGTGAGCACCACCGACGTCACTAGTAAGCTCAACGAGGTCGACATCGAGTCCGGCGAGGAAGCTAACAAGCGGAGTAACAATTGGCTACCACCTTCTTGGGCTATTCTTGGCTTGGTTGTCCTCGGATTTAATGAATTTAGAAATCATGACAGTCTTAAGTTGGTGCCAACTATCATGAACATGATGAAGAGATTACTGGATGAAGGGGAAGCAGCTATTGTGGATAACAATCCTCAAAGAAACCCTGCAGTAGCATCAAAAGGCATAAGCAATGGAGCAAATGCAGGAGGATTCCCCGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006810 GO:0006888 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009832 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0017076 GO:0019001 GO:0022622 GO:0030029 GO:0030036 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032989 GO:0035639 GO:0036094 GO:0040007 GO:0042546 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060560 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0090558 GO:0090627 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0099402 GO:1901265 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RHD3

Protein Analysis

118

Amino Acids

12.98

Weight (kDa)

4.76

Isoelectric Point (pI)

56.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sey1_3HB	PF20428	34 - 63	9.2e-06	Sey1 three-helix bundle domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13870 AT3G13870
fragaria_vesca	FvH4_6g33350 FvH4_6g33350 FvH4_6g33350 FvH4_6g33350
malus_domestica	MD09G1193400.v1.1 MD17G1174200.v1.1
prunus_persica	Prupe.3G049800_v2.0.a1
pyrus_communis	pycom09g10990 pycom17g17830
rosa_chinensis	RchiOBHm_Chr2g0143201 RchiOBHm_Chr2g0169871
rosa_laevigata	RLG00000020013
rosa_multiflora	Rmu_co8092052.1_g000001 Rmu_sc0000181.1_g000004 Rmu_sc0003950.1_g000012
rosa_roxburghii	Rroxscaffold_2G00102050 Rroxscaffold_5G00359600 Rroxscaffold_7G00190950 Rroxscaffold_7G00191100
rosa_rugosa	Rorug02G0379200
rosa_samantha	Rh1BG269400 Rh2AG432000 Rh2BG440600 Rh2CG385100 Rh2CG417900 Rh2DG450800 Rh7AG446900
rosa_wichuraiana	Rw2G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	69
AccB1I	GGYRCC	1 cut(s)	214
AccI	GTMKAC	1 cut(s)	90
AciI	CCGC	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	185
AcyI	GRCGYC	1 cut(s)	66
AflII	CTTAAG	1 cut(s)	206
AhdI	GACNNNNNGTC	2 cut(s)	16, 97
AhlI	ACTAGT	1 cut(s)	71
AluBI	AGCT	3 cut(s)	79, 113, 266
AluI	AGCT	3 cut(s)	79, 113, 266
Alw21I	GWGCWC	1 cut(s)	59
ApeKI	GCWGC	1 cut(s)	263
ApoI	RAATTY	1 cut(s)	185
AsuHPI	GGTGA	2 cut(s)	24, 64
BanI	GGYRCC	1 cut(s)	214
Bbv12I	GWGCWC	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	275
BcuI	ACTAGT	1 cut(s)	71
BfaI	CTAG	1 cut(s)	72
BfmI	CTRYAG	1 cut(s)	297
BfrI	CTTAAG	1 cut(s)	206
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
BmeRI	GACNNNNNGTC	2 cut(s)	16, 97
BmiI	GGNNCC	1 cut(s)	216
BmsI	GCATC	1 cut(s)	314
BsaAI	YACGTR	1 cut(s)	46
BsaBI	GATNNNNATC	1 cut(s)	279
BsaHI	GRCGYC	1 cut(s)	66
BsaJI	CCNNGG	2 cut(s)	5, 172
Bse1I	ACTGG	1 cut(s)	252
Bse3DI	GCAATG	1 cut(s)	328
Bse8I	GATNNNNATC	1 cut(s)	279
BseDI	CCNNGG	2 cut(s)	5, 172
BseGI	GGATG	1 cut(s)	256
BseJI	GATNNNNATC	1 cut(s)	279
BseMI	GCAATG	1 cut(s)	328
BseNI	ACTGG	1 cut(s)	252
BseXI	GCAGC	1 cut(s)	275
Bsh1285I	CGRYCG	1 cut(s)	20
BshNI	GGYRCC	1 cut(s)	214
BsiEI	CGRYCG	1 cut(s)	20
BsiHKAI	GWGCWC	1 cut(s)	59
BsiSI	CCGG	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	59
BspACI	CCGC	1 cut(s)	121
BspHI	TCATGA	2 cut(s)	196, 225
BspLI	GGNNCC	1 cut(s)	216
BspMAI	CTGCAG	1 cut(s)	301
BspT107I	GGYRCC	1 cut(s)	214
BspTI	CTTAAG	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	328
BsrI	ACTGG	1 cut(s)	252
BssECI	CCNNGG	2 cut(s)	5, 172
BssNI	GRCGYC	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	5
Bst4CI	ACNGT	2 cut(s)	18, 203
Bst6I	CTCTTC	2 cut(s)	233, 345
BstACI	GRCGYC	1 cut(s)	66
BstAFI	CTTAAG	1 cut(s)	206
BstBAI	YACGTR	1 cut(s)	46
BstF5I	GGATG	1 cut(s)	256
BstMCI	CGRYCG	1 cut(s)	20
BstSFI	CTRYAG	1 cut(s)	297
BstV1I	GCAGC	1 cut(s)	275
BstXI	CCANNNNNNTGG	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	256
CciI	TCATGA	2 cut(s)	196, 225
CviAII	CATG	3 cut(s)	197, 226, 232
CviJI	RGCY	6 cut(s)	79, 113, 136, 152, 162, 266
CviKI_1	RGCY	6 cut(s)	79, 113, 136, 152, 162, 266
DriI	GACNNNNNGTC	2 cut(s)	16, 97
Eam1104I	CTCTTC	2 cut(s)	233, 345
Eam1105I	GACNNNNNGTC	2 cut(s)	16, 97
EarI	CTCTTC	2 cut(s)	233, 345
Eco130I	CCWWGG	1 cut(s)	5
EcoT14I	CCWWGG	1 cut(s)	5
ErhI	CCWWGG	1 cut(s)	5
FaeI	CATG	3 cut(s)	200, 229, 235
FaiI	YATR	5 cut(s)	43, 198, 227, 233, 317
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	3 cut(s)	196, 225, 231
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	1 cut(s)	264
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	1 cut(s)	72
GluI	GCNGC	1 cut(s)	264
HapII	CCGG	1 cut(s)	102
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	3 cut(s)	200, 229, 235
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	4 cut(s)	11, 29, 98, 342
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	2 cut(s)	24, 64
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	176
Hpy188III	TCNNGA	2 cut(s)	197, 226
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	2 cut(s)	153, 248
HpyCH4III	ACNGT	2 cut(s)	18, 203
HpyCH4IV	ACGT	2 cut(s)	45, 66
HpyCH4V	TGCA	2 cut(s)	299, 335
HpySE526I	ACGT	2 cut(s)	45, 66
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	3 cut(s)	200, 229, 235
LmnI	GCTCC	1 cut(s)	326
LpnPI	CCDG	4 cut(s)	115, 233, 309, 321
Lsp1109I	GCAGC	1 cut(s)	275
LweI	GCATC	1 cut(s)	314
MaeI	CTAG	1 cut(s)	72
MaeII	ACGT	2 cut(s)	45, 66
MaeIII	GTNAC	3 cut(s)	21, 67, 125
MboII	GAAGA	1 cut(s)	250
MfeI	CAATTG	1 cut(s)	130
MhlI	GDGCHC	1 cut(s)	59
MluCI	AATT	2 cut(s)	130, 185
MlyI	GAGTC	2 cut(s)	5, 107
MnlI	CCTC	6 cut(s)	43, 79, 100, 182, 294, 332
MseI	TTAA	2 cut(s)	180, 207
MslI	CAYNNNNRTG	1 cut(s)	230
MspCI	CTTAAG	1 cut(s)	206
MspI	CCGG	1 cut(s)	102
MunI	CAATTG	1 cut(s)	130
NlaIII	CATG	3 cut(s)	200, 229, 235
NlaIV	GGNNCC	1 cut(s)	216
NmuCI	GTSAC	1 cut(s)	67
PagI	TCATGA	2 cut(s)	196, 225
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	29, 342
PkrI	GCNGC	1 cut(s)	265
PleI	GAGTC	2 cut(s)	5, 106
PpsI	GAGTC	2 cut(s)	5, 106
Ppu21I	YACGTR	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	216
PstI	CTGCAG	1 cut(s)	301
RseI	CAYNNNNRTG	1 cut(s)	230
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	2 cut(s)	180, 207
SatI	GCNGC	1 cut(s)	264
SchI	GAGTC	2 cut(s)	5, 107
SduI	GDGCHC	1 cut(s)	59
SetI	ASST	8 cut(s)	48, 54, 69, 81, 90, 115, 145, 268
SfaNI	GCATC	1 cut(s)	314
SfcI	CTRYAG	1 cut(s)	297
SmiMI	CAYNNNNRTG	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
SpeI	ACTAGT	1 cut(s)	71
Sse9I	AATT	2 cut(s)	130, 185
SsiI	CCGC	1 cut(s)	121
SspMI	CTAG	1 cut(s)	72
StyI	CCWWGG	1 cut(s)	5
TaaI	ACNGT	2 cut(s)	18, 203
TaiI	ACGT	2 cut(s)	48, 69
TaqI	TCGA	2 cut(s)	90, 96
TasI	AATT	2 cut(s)	130, 185
TfiI	GAWTC	2 cut(s)	29, 342
Tru1I	TTAA	2 cut(s)	180, 207
Tru9I	TTAA	2 cut(s)	180, 207
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	1 cut(s)	263
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	4 cut(s)	198, 242, 251, 267
Vha464I	CTTAAG	1 cut(s)	206
XapI	RAATTY	1 cut(s)	185
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	1 cut(s)	72
ZraI	GACGTC	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.