AT3G15351

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003173
Physical Location & Seq
Forward (+)
5175948 .. 5177721
1774 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G15351.7

Sequence Viewer

Length: 498 bp
ATGGATTTGGATCCAAAGAAGTTTGCTGCACTATTGGACAAAATTGAAGCTGAAGCTGATGAGTTTCTATTAGCTCGAAATCAGATGGTGGAGAATGACAAGGAGAGGAATGCAAACCGAGAGGCTCTTACAGCACTAAGGAAGAGAGCTCGGACAACAAAGACTAGTGTTATGTCTCCATTTGATTCTATGATGAAGGATATCCATGGGAGCTCAACGAAACCTTTGGTCCAAGAAGTTTGCTCCACATGTGGATCCCATGACTCTAGTGAACCCACCTGGATGATGCTCCCAGGAGCTGATCTTTTTGCTGCAATTCCGTTTCATGCTGTGCATACAATGCTAGAGAAAGATGAAGAGAAAATGGAGTTTGAATCGAAGAAGTTACAGAGCTTAGTGAAGGAAAAAGCTCTGTTTATATCGGAACTAGGGGCTCTTGCTGATGGTATTTCTCCTGGCGTTATCAGATCGTTGGTGGCTTTAGAGGACAAACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.34

Weight (kDa)

5.29

Isoelectric Point (pI)

44.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 5, 18, 249, 262
AcuI CTGAAG 1 cut(s) 72
AflIII ACRYGT 1 cut(s) 248
AgsI TTSAA 2 cut(s) 47, 374
AhlI ACTAGT 1 cut(s) 164
AjnI CCWGG 3 cut(s) 278, 292, 454
AluBI AGCT 8 cut(s) 50, 56, 74, 149, 213, 299, 393, 410
AluI AGCT 8 cut(s) 50, 56, 74, 149, 213, 299, 393, 410
Alw21I GWGCWC 2 cut(s) 151, 215
Alw26I GTCTC 1 cut(s) 180
AlwI GGATC 4 cut(s) 5, 18, 249, 262
AlwNI CAGNNNCTG 1 cut(s) 299
ApeKI GCWGC 2 cut(s) 26, 311
AspS9I GGNCC 1 cut(s) 229
AvaII GGWCC 1 cut(s) 229
BamHI GGATCC 2 cut(s) 10, 254
BanII GRGCYC 3 cut(s) 151, 215, 436
Bbv12I GWGCWC 2 cut(s) 151, 215
BbvI GCAGC 2 cut(s) 13, 298
BccI CCATC 2 cut(s) 79, 437
BciT130I CCWGG 3 cut(s) 280, 294, 456
BcoDI GTCTC 1 cut(s) 180
BcuI ACTAGT 1 cut(s) 164
BfaI CTAG 4 cut(s) 165, 267, 344, 428
BisI GCNGC 2 cut(s) 27, 312
BlsI GCNGC 2 cut(s) 28, 313
Bme1390I CCNGG 3 cut(s) 280, 294, 456
Bme18I GGWCC 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 229
BmiI GGNNCC 2 cut(s) 12, 256
BmrFI CCNGG 3 cut(s) 280, 294, 456
BmsI GCATC 1 cut(s) 276
BsaBI GATNNNNATC 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 205, 292
Bse8I GATNNNNATC 1 cut(s) 9
BseBI CCWGG 3 cut(s) 280, 294, 456
BseDI CCNNGG 2 cut(s) 205, 292
BseGI GGATG 1 cut(s) 288
BseJI GATNNNNATC 1 cut(s) 9
BseXI GCAGC 2 cut(s) 13, 298
BsgI GTGCAG 1 cut(s) 12
BsiHKAI GWGCWC 2 cut(s) 151, 215
BsmAI GTCTC 1 cut(s) 180
BsmI GAATGC 1 cut(s) 115
Bsp1286I GDGCHC 3 cut(s) 151, 215, 436
Bsp143I GATC 4 cut(s) 10, 254, 301, 467
Bsp19I CCATGG 1 cut(s) 205
BspLI GGNNCC 2 cut(s) 12, 256
BspPI GGATC 4 cut(s) 5, 18, 249, 262
BssECI CCNNGG 2 cut(s) 205, 292
BssMI GATC 4 cut(s) 10, 254, 301, 467
BssT1I CCWWGG 1 cut(s) 205
Bst2UI CCWGG 3 cut(s) 280, 294, 456
Bst6I CTCTTC 2 cut(s) 137, 351
BstAPI GCANNNNNTGC 1 cut(s) 340
BstDEI CTNAG 2 cut(s) 137, 394
BstDSI CCRYGG 1 cut(s) 205
BstF5I GGATG 1 cut(s) 288
BstKTI GATC 4 cut(s) 13, 257, 304, 470
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 4 cut(s) 10, 254, 301, 467
BstMWI GCNNNNNNNGC 2 cut(s) 131, 340
BstNI CCWGG 3 cut(s) 280, 294, 456
BstNSI RCATGY 1 cut(s) 252
BstSCI CCNGG 3 cut(s) 278, 292, 454
BstV1I GCAGC 2 cut(s) 13, 298
BstX2I RGATCY 2 cut(s) 10, 254
BstYI RGATCY 2 cut(s) 10, 254
BtgI CCRYGG 1 cut(s) 205
BtsCI GGATG 1 cut(s) 288
CaiI CAGNNNCTG 1 cut(s) 299
Cfr13I GGNCC 1 cut(s) 229
CviAII CATG 4 cut(s) 206, 249, 260, 326
DdeI CTNAG 2 cut(s) 137, 394
DpnI GATC 4 cut(s) 12, 256, 303, 469
DpnII GATC 4 cut(s) 10, 254, 301, 467
Eam1104I CTCTTC 2 cut(s) 137, 351
EarI CTCTTC 2 cut(s) 137, 351
Ecl136II GAGCTC 2 cut(s) 149, 213
Eco130I CCWWGG 1 cut(s) 205
Eco24I GRGCYC 3 cut(s) 151, 215, 436
Eco32I GATATC 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 229
Eco53kI GAGCTC 2 cut(s) 149, 213
Eco57I CTGAAG 1 cut(s) 72
EcoICRI GAGCTC 2 cut(s) 149, 213
EcoRII CCWGG 3 cut(s) 278, 292, 454
EcoRV GATATC 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 205
EcoT38I GRGCYC 3 cut(s) 151, 215, 436
ErhI CCWWGG 1 cut(s) 205
FaeI CATG 4 cut(s) 209, 252, 263, 329
FaiI YATR 8 cut(s) 173, 191, 207, 250, 261, 327, 336, 419
FatI CATG 4 cut(s) 205, 248, 259, 325
Fnu4HI GCNGC 2 cut(s) 27, 312
FokI GGATG 1 cut(s) 295
FriOI GRGCYC 3 cut(s) 151, 215, 436
Fsp4HI GCNGC 2 cut(s) 27, 312
FspBI CTAG 4 cut(s) 165, 267, 344, 428
GluI GCNGC 2 cut(s) 27, 312
Hin1II CATG 4 cut(s) 209, 252, 263, 329
HinfI GANTC 3 cut(s) 185, 263, 374
Hpy166II GTNNAC 1 cut(s) 272
Hpy188I TCNGA 4 cut(s) 84, 153, 424, 467
Hpy8I GTNNAC 1 cut(s) 272
HpyAV CCTTC 2 cut(s) 190, 394
HpyCH4V TGCA 4 cut(s) 29, 113, 314, 334
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 340
HpyF3I CTNAG 2 cut(s) 137, 394
Hsp92II CATG 4 cut(s) 209, 252, 263, 329
Kzo9I GATC 4 cut(s) 10, 254, 301, 467
LmnI GCTCC 4 cut(s) 210, 248, 294, 296
LpnPI CCDG 6 cut(s) 265, 279, 292, 306, 441, 468
Lsp1109I GCAGC 2 cut(s) 13, 298
LweI GCATC 1 cut(s) 276
MaeI CTAG 4 cut(s) 165, 267, 344, 428
MaeIII GTNAC 1 cut(s) 384
MalI GATC 4 cut(s) 12, 256, 303, 469
MboI GATC 4 cut(s) 10, 254, 301, 467
MboII GAAGA 3 cut(s) 154, 368, 391
MflI RGATCY 2 cut(s) 10, 254
MhlI GDGCHC 3 cut(s) 151, 215, 436
MluCI AATT 2 cut(s) 42, 315
MlyI GAGTC 1 cut(s) 257
MnlI CCTC 3 cut(s) 99, 115, 478
MseI TTAA 1 cut(s) 496
MslI CAYNNNNRTG 1 cut(s) 281
MspR9I CCNGG 3 cut(s) 280, 294, 456
Mva1269I GAATGC 1 cut(s) 115
MvaI CCWGG 3 cut(s) 280, 294, 456
MwoI GCNNNNNNNGC 2 cut(s) 131, 340
NcoI CCATGG 1 cut(s) 205
NdeII GATC 4 cut(s) 10, 254, 301, 467
NlaIII CATG 4 cut(s) 209, 252, 263, 329
NlaIV GGNNCC 2 cut(s) 12, 256
NspI RCATGY 1 cut(s) 252
PciI ACATGT 1 cut(s) 248
PctI GAATGC 1 cut(s) 115
PfeI GAWTC 2 cut(s) 185, 374
PkrI GCNGC 2 cut(s) 28, 313
PleI GAGTC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 257
PscI ACATGT 1 cut(s) 248
Psp124BI GAGCTC 2 cut(s) 151, 215
Psp6I CCWGG 3 cut(s) 278, 292, 454
PspGI CCWGG 3 cut(s) 278, 292, 454
PspN4I GGNNCC 2 cut(s) 12, 256
PspPI GGNCC 1 cut(s) 229
PstNI CAGNNNCTG 1 cut(s) 299
PsuI RGATCY 2 cut(s) 10, 254
RseI CAYNNNNRTG 1 cut(s) 281
SacI GAGCTC 2 cut(s) 151, 215
SaqAI TTAA 1 cut(s) 496
SatI GCNGC 2 cut(s) 27, 312
Sau3AI GATC 4 cut(s) 10, 254, 301, 467
Sau96I GGNCC 1 cut(s) 229
SchI GAGTC 1 cut(s) 257
ScrFI CCNGG 3 cut(s) 280, 294, 456
SduI GDGCHC 3 cut(s) 151, 215, 436
SfaNI GCATC 1 cut(s) 276
SinI GGWCC 1 cut(s) 229
SmiMI CAYNNNNRTG 1 cut(s) 281
SpeI ACTAGT 1 cut(s) 164
Sse9I AATT 2 cut(s) 42, 315
SspMI CTAG 4 cut(s) 165, 267, 344, 428
SstI GAGCTC 2 cut(s) 151, 215
StyD4I CCNGG 3 cut(s) 278, 292, 454
StyI CCWWGG 1 cut(s) 205
TaqI TCGA 2 cut(s) 76, 377
TasI AATT 2 cut(s) 42, 315
TfiI GAWTC 2 cut(s) 185, 374
Tru1I TTAA 1 cut(s) 496
Tru9I TTAA 1 cut(s) 496
TseI GCWGC 2 cut(s) 26, 311
TspDTI ATGAA 3 cut(s) 209, 314, 369
TspGWI ACGGA 1 cut(s) 309
VpaK11BI GGWCC 1 cut(s) 229
XceI RCATGY 1 cut(s) 252
XspI CTAG 4 cut(s) 165, 267, 344, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.