Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003173

Physical Location & Seq

Genomic Coordinates Forward (+)

49274236 .. 49279026

Gene Structure 4791 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG339300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGATGTTTATCTTGAAATTGCAGCTGGTTGAAAATGATAGGGTGAGGAATGGGAACAGAGAAGCACTTACATCTTTGAGGAAGATAGCTCGAACAACAAAAACTAGTGTTCCATCTCCTTTTGAGTCAATGATGAAGGAGATTGGAGGAGCTCAATCAAGACCTCTGGTGAAGGAGGTATGCCCCACTTGTGGCAACCATGACTCAAATGAGCGCACATGGATGATGTTCCCTGGAACTGATGTCTTTGCAAGGATTCCATTTCATGCTGCCCATACCATCTTGGAGAAAGATCAAGAACAACTCAACTTTGATTCCAGAAGGCTACAGAGCACCATGAAGGAGAAATCTCTTGTGCTTTCAGAAACAGGAGCCCTTGCTGACAAGATCTGTCCTGGTGTGCTGAAATCCTTGGTGAACCTGACAGACAAACCTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

16.4

Weight (kDa)

9.12

Isoelectric Point (pI)

44.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15351 AT3G15351 AT3G15351 AT3G15351 AT3G15351 AT3G15351 AT3G15351
fragaria_vesca	FvH4_7g10630 FvH4_7g10630
malus_domestica	MD01G1029500.v1.1 MD07G1111400.v1.1 MD10G1232800.v1.1
prunus_persica	Prupe.2G134800_v2.0.a1 Prupe.2G134800_v2.0.a1 Prupe.2G134800_v2.0.a1
pyrus_communis	pycom01g05780 pycom07g09620
rosa_chinensis	RchiOBHm_Chr1g0348571
rosa_laevigata	RLG00000019092 RLG00000028638
rosa_multiflora	Rmu_sc0008668.1_g000003
rosa_roxburghii	Rroxscaffold_4G00306920 Rroxscaffold_4G00306940
rosa_rugosa	Rorug01G0195200 Rorug01G0195300 Rorug01G0195400 Rorug02G0287600 Rorug02G0287700 Rorug02G0287800 Rorug02G0287900
rosa_samantha	Rh1AG213200 Rh1BG179600 Rh1CG197500 Rh1DG209700 Rh2AG339300
rosa_wichuraiana	Rw1G018030 Rw1G018050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgsI	TTSAA	2 cut(s)	16, 32
AhlI	ACTAGT	1 cut(s)	104
AjnI	CCWGG	2 cut(s)	232, 394
AluBI	AGCT	4 cut(s)	25, 89, 152, 438
AluI	AGCT	4 cut(s)	25, 89, 152, 438
Alw21I	GWGCWC	2 cut(s)	154, 335
ApeKI	GCWGC	2 cut(s)	22, 269
AspLEI	GCGC	1 cut(s)	216
AsuHPI	GGTGA	3 cut(s)	55, 181, 427
BanII	GRGCYC	2 cut(s)	154, 376
Bbv12I	GWGCWC	2 cut(s)	154, 335
BbvI	GCAGC	2 cut(s)	34, 256
BccI	CCATC	2 cut(s)	121, 287
BciT130I	CCWGG	2 cut(s)	234, 396
BcuI	ACTAGT	1 cut(s)	104
BfaI	CTAG	2 cut(s)	105, 435
BfmI	CTRYAG	1 cut(s)	326
BglII	AGATCT	1 cut(s)	387
BisI	GCNGC	2 cut(s)	23, 270
BlsI	GCNGC	2 cut(s)	24, 271
Bme1390I	CCNGG	2 cut(s)	234, 396
BmiI	GGNNCC	1 cut(s)	373
BmrFI	CCNGG	2 cut(s)	234, 396
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	2 cut(s)	232, 411
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	2 cut(s)	234, 396
BseDI	CCNNGG	2 cut(s)	232, 411
BseGI	GGATG	1 cut(s)	228
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseRI	GAGGAG	1 cut(s)	162
BseXI	GCAGC	2 cut(s)	34, 256
BsiHKAI	GWGCWC	2 cut(s)	154, 335
BslI	CCNNNNNNNGG	1 cut(s)	191
Bsp1286I	GDGCHC	3 cut(s)	154, 335, 376
Bsp143I	GATC	2 cut(s)	292, 387
BspLI	GGNNCC	1 cut(s)	373
BssECI	CCNNGG	2 cut(s)	232, 411
BssMI	GATC	2 cut(s)	292, 387
BssT1I	CCWWGG	1 cut(s)	411
Bst2UI	CCWGG	2 cut(s)	234, 396
BstF5I	GGATG	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	2 cut(s)	295, 390
BstMBI	GATC	2 cut(s)	292, 387
BstNI	CCWGG	2 cut(s)	234, 396
BstSCI	CCNGG	2 cut(s)	232, 394
BstSFI	CTRYAG	1 cut(s)	326
BstV1I	GCAGC	2 cut(s)	34, 256
BstX2I	RGATCY	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	387
BtsCI	GGATG	1 cut(s)	228
CfoI	GCGC	1 cut(s)	216
CviAII	CATG	4 cut(s)	200, 219, 266, 337
CviJI	RGCY	6 cut(s)	25, 89, 152, 325, 374, 438
CviKI_1	RGCY	6 cut(s)	25, 89, 152, 325, 374, 438
DpnI	GATC	2 cut(s)	294, 389
DpnII	GATC	2 cut(s)	292, 387
Ecl136II	GAGCTC	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	411
Eco24I	GRGCYC	2 cut(s)	154, 376
Eco53kI	GAGCTC	1 cut(s)	152
EcoICRI	GAGCTC	1 cut(s)	152
EcoRII	CCWGG	2 cut(s)	232, 394
EcoT14I	CCWWGG	1 cut(s)	411
EcoT38I	GRGCYC	2 cut(s)	154, 376
ErhI	CCWWGG	1 cut(s)	411
FaeI	CATG	4 cut(s)	203, 222, 269, 340
FaiI	YATR	6 cut(s)	181, 201, 220, 267, 276, 338
FatI	CATG	4 cut(s)	199, 218, 265, 336
Fnu4HI	GCNGC	2 cut(s)	23, 270
FokI	GGATG	1 cut(s)	235
FriOI	GRGCYC	2 cut(s)	154, 376
Fsp4HI	GCNGC	2 cut(s)	23, 270
FspBI	CTAG	2 cut(s)	105, 435
GlaI	GCGC	1 cut(s)	215
GluI	GCNGC	2 cut(s)	23, 270
HhaI	GCGC	1 cut(s)	216
Hin1II	CATG	4 cut(s)	203, 222, 269, 340
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HinfI	GANTC	4 cut(s)	125, 203, 256, 314
HphI	GGTGA	3 cut(s)	55, 181, 427
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	1 cut(s)	364
Hpy188III	TCNNGA	4 cut(s)	13, 159, 296, 318
Hpy8I	GTNNAC	1 cut(s)	418
HpyAV	CCTTC	4 cut(s)	130, 166, 315, 334
HpyCH4V	TGCA	2 cut(s)	22, 251
Hsp92II	CATG	4 cut(s)	203, 222, 269, 340
HspAI	GCGC	1 cut(s)	214
Kzo9I	GATC	2 cut(s)	292, 387
LmnI	GCTCC	2 cut(s)	149, 371
LpnPI	CCDG	9 cut(s)	11, 152, 219, 246, 331, 354, 381, 408, 434
Lsp1109I	GCAGC	2 cut(s)	34, 256
MaeI	CTAG	2 cut(s)	105, 435
MalI	GATC	2 cut(s)	294, 389
MboI	GATC	2 cut(s)	292, 387
MboII	GAAGA	1 cut(s)	94
MflI	RGATCY	1 cut(s)	387
MhlI	GDGCHC	3 cut(s)	154, 335, 376
MluCI	AATT	1 cut(s)	17
MlyI	GAGTC	2 cut(s)	134, 197
MnlI	CCTC	5 cut(s)	39, 72, 140, 169, 174
MslI	CAYNNNNRTG	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	25
MspR9I	CCNGG	2 cut(s)	234, 396
MvaI	CCWGG	2 cut(s)	234, 396
NdeII	GATC	2 cut(s)	292, 387
NlaIII	CATG	4 cut(s)	203, 222, 269, 340
NlaIV	GGNNCC	1 cut(s)	373
PfeI	GAWTC	2 cut(s)	256, 314
PkrI	GCNGC	2 cut(s)	24, 271
PleI	GAGTC	2 cut(s)	133, 197
PpsI	GAGTC	2 cut(s)	133, 197
Psp124BI	GAGCTC	1 cut(s)	154
Psp6I	CCWGG	2 cut(s)	232, 394
PspGI	CCWGG	2 cut(s)	232, 394
PspN4I	GGNNCC	1 cut(s)	373
PsuI	RGATCY	1 cut(s)	387
PvuII	CAGCTG	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	221
SacI	GAGCTC	1 cut(s)	154
SatI	GCNGC	2 cut(s)	23, 270
Sau3AI	GATC	2 cut(s)	292, 387
SchI	GAGTC	2 cut(s)	134, 197
ScrFI	CCNGG	2 cut(s)	234, 396
SduI	GDGCHC	3 cut(s)	154, 335, 376
SetI	ASST	8 cut(s)	27, 91, 154, 166, 180, 423, 436, 440
SfcI	CTRYAG	1 cut(s)	326
SmiMI	CAYNNNNRTG	1 cut(s)	221
SpeI	ACTAGT	1 cut(s)	104
Sse9I	AATT	1 cut(s)	17
SspMI	CTAG	2 cut(s)	105, 435
SstI	GAGCTC	1 cut(s)	154
StyD4I	CCNGG	2 cut(s)	232, 394
StyI	CCWWGG	1 cut(s)	411
TaqI	TCGA	1 cut(s)	91
TasI	AATT	1 cut(s)	17
TfiI	GAWTC	2 cut(s)	256, 314
TseI	GCWGC	2 cut(s)	22, 269
TspDTI	ATGAA	3 cut(s)	149, 254, 353
XspI	CTAG	2 cut(s)	105, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.