RLG00000028638

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003173
Physical Location & Seq
Reverse (-)
25501314 .. 25503604
2291 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028638

Sequence Viewer

Length: 501 bp
ATGGACGATAGCATGAAGCAATTCCAGAAAATATTAATTGAGCATGAGACTCAAGCTGAGCAACTCTTTCTAGCCAAACACCAGCTGGTTGAAAATGATAGGGTGAGGAATGGGAACAGAGAAGCACTTACATCTTTGAGGAAGATAGCTCGAACAACGAAAACTAGTGTTCCATCTCCTTTTGAGTCGATGATGAAGGAGATTGGGGGAGCTCAATCAAGACCCCTGGTGAAGGAGGTATGCCCCACCTGTGGCAACCATGACTCAAATGAGCGCTCATGGATGATGTTCCCTGGAACTGATGTCTTTGCTAGGATTCCATTTCATGCTGCCCATACCATCTTGGAGAAAGATCAAGAACAACTCGACTTCAATTCCAGAAGGCTACAGAGCACTATGAAGGAGAAATCTCTTGTGCTTTCAGAAACAGGTGCCCTTGCTGACAAGATCTGTCCTGGTGTGCTAAAATCCTTGGTAACCCTGACAGACAAACCTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.78

Weight (kDa)

8.45

Isoelectric Point (pI)

44.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 431
AfeI AGCGCT 1 cut(s) 275
AfiI CCNNNNNNNGG 2 cut(s) 232, 251
AgsI TTSAA 2 cut(s) 92, 373
AhlI ACTAGT 1 cut(s) 164
AjnI CCWGG 3 cut(s) 225, 292, 454
AluBI AGCT 4 cut(s) 56, 85, 149, 212
AluI AGCT 4 cut(s) 56, 85, 149, 212
Alw21I GWGCWC 2 cut(s) 214, 395
Alw26I GTCTC 1 cut(s) 41
Aor51HI AGCGCT 1 cut(s) 275
ApeKI GCWGC 1 cut(s) 329
AseI ATTAAT 1 cut(s) 35
Asp700I GAANNNNTTC 1 cut(s) 20
AspLEI GCGC 1 cut(s) 276
AsuHPI GGTGA 2 cut(s) 115, 241
BaeGI GKGCMC 1 cut(s) 436
BanI GGYRCC 1 cut(s) 431
BanII GRGCYC 1 cut(s) 214
Bbv12I GWGCWC 2 cut(s) 214, 395
BbvI GCAGC 1 cut(s) 316
BccI CCATC 2 cut(s) 181, 347
BciT130I CCWGG 3 cut(s) 227, 294, 456
BcoDI GTCTC 1 cut(s) 41
BcuI ACTAGT 1 cut(s) 164
BfaI CTAG 3 cut(s) 71, 165, 312
BfmI CTRYAG 1 cut(s) 386
BfoI RGCGCY 1 cut(s) 277
BglII AGATCT 1 cut(s) 447
BisI GCNGC 1 cut(s) 330
BlpI GCTNAGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 331
Bme1390I CCNGG 3 cut(s) 227, 294, 456
BmiI GGNNCC 1 cut(s) 433
BmrFI CCNGG 3 cut(s) 227, 294, 456
Bpu1102I GCTNAGC 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 36
BsaJI CCNNGG 3 cut(s) 225, 292, 471
Bsc4I CCNNNNNNNGG 2 cut(s) 232, 251
BseBI CCWGG 3 cut(s) 227, 294, 456
BseDI CCNNGG 3 cut(s) 225, 292, 471
BseGI GGATG 1 cut(s) 288
BseLI CCNNNNNNNGG 2 cut(s) 232, 251
BseMII CTCAG 1 cut(s) 48
BseSI GKGCMC 1 cut(s) 436
BseXI GCAGC 1 cut(s) 316
BshNI GGYRCC 1 cut(s) 431
BsiHKAI GWGCWC 2 cut(s) 214, 395
BslI CCNNNNNNNGG 2 cut(s) 232, 251
BsmAI GTCTC 1 cut(s) 41
Bsp1286I GDGCHC 3 cut(s) 214, 395, 436
Bsp143I GATC 2 cut(s) 352, 447
Bsp1720I GCTNAGC 1 cut(s) 57
BspCNI CTCAG 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 433
BspT107I GGYRCC 1 cut(s) 431
BssECI CCNNGG 3 cut(s) 225, 292, 471
BssMI GATC 2 cut(s) 352, 447
BssT1I CCWWGG 1 cut(s) 471
Bst2UI CCWGG 3 cut(s) 227, 294, 456
BstDEI CTNAG 2 cut(s) 57, 495
BstEII GGTNACC 1 cut(s) 475
BstENI CCTNNNNNAGG 1 cut(s) 230
BstF5I GGATG 1 cut(s) 288
BstH2I RGCGCY 1 cut(s) 277
BstHHI GCGC 1 cut(s) 276
BstKTI GATC 2 cut(s) 355, 450
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 2 cut(s) 352, 447
BstNI CCWGG 3 cut(s) 227, 294, 456
BstPI GGTNACC 1 cut(s) 475
BstSCI CCNGG 3 cut(s) 225, 292, 454
BstSFI CTRYAG 1 cut(s) 386
BstSLI GKGCMC 1 cut(s) 436
BstV1I GCAGC 1 cut(s) 316
BstX2I RGATCY 1 cut(s) 447
BstYI RGATCY 1 cut(s) 447
BtsCI GGATG 1 cut(s) 288
CfoI GCGC 1 cut(s) 276
CviAII CATG 5 cut(s) 13, 44, 260, 279, 326
CviJI RGCY 6 cut(s) 56, 74, 85, 149, 212, 385
CviKI_1 RGCY 6 cut(s) 56, 74, 85, 149, 212, 385
DdeI CTNAG 2 cut(s) 57, 495
DpnI GATC 2 cut(s) 354, 449
DpnII GATC 2 cut(s) 352, 447
Ecl136II GAGCTC 1 cut(s) 212
Eco130I CCWWGG 1 cut(s) 471
Eco24I GRGCYC 1 cut(s) 214
Eco47III AGCGCT 1 cut(s) 275
Eco53kI GAGCTC 1 cut(s) 212
Eco91I GGTNACC 1 cut(s) 475
EcoICRI GAGCTC 1 cut(s) 212
EcoNI CCTNNNNNAGG 1 cut(s) 230
EcoO65I GGTNACC 1 cut(s) 475
EcoRII CCWGG 3 cut(s) 225, 292, 454
EcoT14I CCWWGG 1 cut(s) 471
EcoT38I GRGCYC 1 cut(s) 214
ErhI CCWWGG 1 cut(s) 471
FaeI CATG 5 cut(s) 16, 47, 263, 282, 329
FaiI YATR 8 cut(s) 14, 45, 241, 261, 280, 327, 336, 398
FatI CATG 5 cut(s) 12, 43, 259, 278, 325
Fnu4HI GCNGC 1 cut(s) 330
FokI GGATG 1 cut(s) 295
FriOI GRGCYC 1 cut(s) 214
Fsp4HI GCNGC 1 cut(s) 330
FspBI CTAG 3 cut(s) 71, 165, 312
GlaI GCGC 1 cut(s) 275
GluI GCNGC 1 cut(s) 330
HaeII RGCGCY 1 cut(s) 277
HhaI GCGC 1 cut(s) 276
Hin1II CATG 5 cut(s) 16, 47, 263, 282, 329
Hin6I GCGC 1 cut(s) 274
HinP1I GCGC 1 cut(s) 274
HinfI GANTC 4 cut(s) 49, 185, 263, 316
HphI GGTGA 2 cut(s) 115, 241
Hpy188I TCNGA 1 cut(s) 424
Hpy188III TCNNGA 4 cut(s) 25, 219, 356, 378
HpyAV CCTTC 4 cut(s) 190, 226, 375, 394
HpyF3I CTNAG 2 cut(s) 57, 495
Hsp92II CATG 5 cut(s) 16, 47, 263, 282, 329
HspAI GCGC 1 cut(s) 274
Kzo9I GATC 2 cut(s) 352, 447
LmnI GCTCC 1 cut(s) 209
Lsp1109I GCAGC 1 cut(s) 316
MaeI CTAG 3 cut(s) 71, 165, 312
MaeIII GTNAC 1 cut(s) 475
MalI GATC 2 cut(s) 354, 449
MboI GATC 2 cut(s) 352, 447
MboII GAAGA 1 cut(s) 154
MflI RGATCY 1 cut(s) 447
MhlI GDGCHC 3 cut(s) 214, 395, 436
MluCI AATT 3 cut(s) 20, 36, 373
MlyI GAGTC 3 cut(s) 43, 194, 257
MnlI CCTC 3 cut(s) 99, 132, 229
MroXI GAANNNNTTC 1 cut(s) 20
MseI TTAA 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 85
MspR9I CCNGG 3 cut(s) 227, 294, 456
MvaI CCWGG 3 cut(s) 227, 294, 456
NdeII GATC 2 cut(s) 352, 447
NlaIII CATG 5 cut(s) 16, 47, 263, 282, 329
NlaIV GGNNCC 1 cut(s) 433
PdmI GAANNNNTTC 1 cut(s) 20
PfeI GAWTC 1 cut(s) 316
PkrI GCNGC 1 cut(s) 331
PleI GAGTC 3 cut(s) 43, 193, 257
PpsI GAGTC 3 cut(s) 43, 193, 257
PshBI ATTAAT 1 cut(s) 35
Psp124BI GAGCTC 1 cut(s) 214
Psp6I CCWGG 3 cut(s) 225, 292, 454
PspEI GGTNACC 1 cut(s) 475
PspGI CCWGG 3 cut(s) 225, 292, 454
PspN4I GGNNCC 1 cut(s) 433
PsuI RGATCY 1 cut(s) 447
PvuII CAGCTG 1 cut(s) 85
SacI GAGCTC 1 cut(s) 214
SaqAI TTAA 1 cut(s) 35
SatI GCNGC 1 cut(s) 330
Sau3AI GATC 2 cut(s) 352, 447
SchI GAGTC 3 cut(s) 43, 194, 257
ScrFI CCNGG 3 cut(s) 227, 294, 456
SduI GDGCHC 3 cut(s) 214, 395, 436
SetI ASST 8 cut(s) 58, 87, 151, 214, 240, 251, 433, 496
SfcI CTRYAG 1 cut(s) 386
SmlI CTYRAG 1 cut(s) 51
SmoI CTYRAG 1 cut(s) 51
SpeI ACTAGT 1 cut(s) 164
Sse9I AATT 3 cut(s) 20, 36, 373
SspI AATATT 1 cut(s) 33
SspMI CTAG 3 cut(s) 71, 165, 312
SstI GAGCTC 1 cut(s) 214
StyD4I CCNGG 3 cut(s) 225, 292, 454
StyI CCWWGG 1 cut(s) 471
TaqI TCGA 3 cut(s) 151, 188, 366
TasI AATT 3 cut(s) 20, 36, 373
TfiI GAWTC 1 cut(s) 316
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TseI GCWGC 1 cut(s) 329
TspDTI ATGAA 4 cut(s) 29, 209, 314, 413
VspI ATTAAT 1 cut(s) 35
XagI CCTNNNNNAGG 1 cut(s) 230
XcmI CCANNNNNNNNNTGG 1 cut(s) 82
XmnI GAANNNNTTC 1 cut(s) 20
XspI CTAG 3 cut(s) 71, 165, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.