Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003173

Physical Location & Seq

Genomic Coordinates Reverse (-)

27904357 .. 27909120

Gene Structure 4764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00306920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGACGACAGCATGAAGCAATTTCAGAAAATCTTAATTGAGCATGAGACTCAAGCTGAGCAACTCTTTCTAGCCAAACACCAGCTGGTTGAAAATGATAGGGTGAGGAATGGGAACAGAGAAGCACTTACATCTTTGAGGAAGATAGCTCGAACAACGAAAACTAGTGTTCCATCTCCTTTTGAGTCGATGATGAAGGAGATTGGGGAGCTCAATCAAGACCCCTGGATTCCATTTCATGCTGCCCATACCATCTTGGAGAAAGATCAAGAACAACTCGACTTTGATTCCAGAAGGCTACAGAGCACTATGAAGGAGAAATCTCTTGTGCTTTCAGAAACAGGTGCCCTTGCTGACAAGATCTGTCCTGGTGTGCTAAAATCCTTGGTAACCCTGACAGACAAACCTAAGTATAAACTCTTAAATGGGATTGTTGATATGAGCTTGAATTTGGAGGAAGCAGTTGAAAATAGTATTCAAAACAACGAAACCATAAATGTTGGCTTTTGTCTGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

19.54

Weight (kDa)

5.43

Isoelectric Point (pI)

37.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15351 AT3G15351 AT3G15351 AT3G15351 AT3G15351 AT3G15351 AT3G15351
fragaria_vesca	FvH4_7g10630 FvH4_7g10630
malus_domestica	MD01G1029500.v1.1 MD07G1111400.v1.1 MD10G1232800.v1.1
prunus_persica	Prupe.2G134800_v2.0.a1 Prupe.2G134800_v2.0.a1 Prupe.2G134800_v2.0.a1
pyrus_communis	pycom01g05780 pycom07g09620
rosa_chinensis	RchiOBHm_Chr1g0348571
rosa_laevigata	RLG00000019092 RLG00000028638
rosa_multiflora	Rmu_sc0008668.1_g000003
rosa_roxburghii	Rroxscaffold_4G00306920 Rroxscaffold_4G00306940
rosa_rugosa	Rorug01G0195200 Rorug01G0195300 Rorug01G0195400 Rorug02G0287600 Rorug02G0287700 Rorug02G0287800 Rorug02G0287900
rosa_samantha	Rh1AG213200 Rh1BG179600 Rh1CG197500 Rh1DG209700 Rh2AG339300
rosa_wichuraiana	Rw1G018030 Rw1G018050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	344
AcsI	RAATTY	1 cut(s)	448
AgsI	TTSAA	4 cut(s)	92, 448, 467, 479
AhlI	ACTAGT	1 cut(s)	164
AjnI	CCWGG	2 cut(s)	224, 367
AluBI	AGCT	5 cut(s)	56, 85, 149, 211, 444
AluI	AGCT	5 cut(s)	56, 85, 149, 211, 444
Alw21I	GWGCWC	2 cut(s)	213, 308
Alw26I	GTCTC	1 cut(s)	41
ApeKI	GCWGC	1 cut(s)	242
ApoI	RAATTY	1 cut(s)	448
AsuHPI	GGTGA	1 cut(s)	115
BaeGI	GKGCMC	1 cut(s)	349
BanI	GGYRCC	1 cut(s)	344
BanII	GRGCYC	1 cut(s)	213
Bbv12I	GWGCWC	2 cut(s)	213, 308
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	2 cut(s)	181, 260
BciT130I	CCWGG	2 cut(s)	226, 369
BcoDI	GTCTC	1 cut(s)	41
BcuI	ACTAGT	1 cut(s)	164
BfaI	CTAG	2 cut(s)	71, 165
BfmI	CTRYAG	1 cut(s)	299
BglII	AGATCT	1 cut(s)	360
BisI	GCNGC	1 cut(s)	243
BlpI	GCTNAGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	244
Bme1390I	CCNGG	2 cut(s)	226, 369
BmiI	GGNNCC	1 cut(s)	346
BmrFI	CCNGG	2 cut(s)	226, 369
Bpu1102I	GCTNAGC	1 cut(s)	57
BpuEI	CTTGAG	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	224, 384
BseBI	CCWGG	2 cut(s)	226, 369
BseDI	CCNNGG	2 cut(s)	224, 384
BseMII	CTCAG	1 cut(s)	48
BseSI	GKGCMC	1 cut(s)	349
BseXI	GCAGC	1 cut(s)	229
BshNI	GGYRCC	1 cut(s)	344
BsiHKAI	GWGCWC	2 cut(s)	213, 308
BsmAI	GTCTC	1 cut(s)	41
Bsp1286I	GDGCHC	3 cut(s)	213, 308, 349
Bsp143I	GATC	2 cut(s)	265, 360
Bsp1720I	GCTNAGC	1 cut(s)	57
BspCNI	CTCAG	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	346
BspT107I	GGYRCC	1 cut(s)	344
BssECI	CCNNGG	2 cut(s)	224, 384
BssMI	GATC	2 cut(s)	265, 360
BssT1I	CCWWGG	1 cut(s)	384
Bst2UI	CCWGG	2 cut(s)	226, 369
BstDEI	CTNAG	2 cut(s)	57, 408
BstEII	GGTNACC	1 cut(s)	388
BstKTI	GATC	2 cut(s)	268, 363
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	2 cut(s)	265, 360
BstNI	CCWGG	2 cut(s)	226, 369
BstPI	GGTNACC	1 cut(s)	388
BstSCI	CCNGG	2 cut(s)	224, 367
BstSFI	CTRYAG	1 cut(s)	299
BstSLI	GKGCMC	1 cut(s)	349
BstV1I	GCAGC	1 cut(s)	229
BstX2I	RGATCY	1 cut(s)	360
BstYI	RGATCY	1 cut(s)	360
CviAII	CATG	3 cut(s)	13, 44, 239
CviJI	RGCY	8 cut(s)	56, 74, 85, 149, 211, 298, 444, 504
CviKI_1	RGCY	8 cut(s)	56, 74, 85, 149, 211, 298, 444, 504
DdeI	CTNAG	2 cut(s)	57, 408
DpnI	GATC	2 cut(s)	267, 362
DpnII	GATC	2 cut(s)	265, 360
Ecl136II	GAGCTC	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	384
Eco24I	GRGCYC	1 cut(s)	213
Eco53kI	GAGCTC	1 cut(s)	211
Eco91I	GGTNACC	1 cut(s)	388
EcoICRI	GAGCTC	1 cut(s)	211
EcoO65I	GGTNACC	1 cut(s)	388
EcoRII	CCWGG	2 cut(s)	224, 367
EcoT14I	CCWWGG	1 cut(s)	384
EcoT38I	GRGCYC	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	3 cut(s)	16, 47, 242
FaiI	YATR	8 cut(s)	14, 45, 240, 249, 311, 414, 440, 494
FatI	CATG	3 cut(s)	12, 43, 238
Fnu4HI	GCNGC	1 cut(s)	243
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	2 cut(s)	71, 165
GluI	GCNGC	1 cut(s)	243
Hin1II	CATG	3 cut(s)	16, 47, 242
HinfI	GANTC	4 cut(s)	49, 185, 229, 287
HphI	GGTGA	1 cut(s)	115
Hpy188I	TCNGA	2 cut(s)	27, 337
Hpy188III	TCNNGA	3 cut(s)	218, 269, 291
HpyAV	CCTTC	3 cut(s)	190, 288, 307
HpyF3I	CTNAG	2 cut(s)	57, 408
Hsp92II	CATG	3 cut(s)	16, 47, 242
Kzo9I	GATC	2 cut(s)	265, 360
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	9 cut(s)	71, 95, 211, 238, 304, 327, 354, 381, 407
Lsp1109I	GCAGC	1 cut(s)	229
MaeI	CTAG	2 cut(s)	71, 165
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	2 cut(s)	267, 362
MboI	GATC	2 cut(s)	265, 360
MboII	GAAGA	1 cut(s)	154
MflI	RGATCY	1 cut(s)	360
MhlI	GDGCHC	3 cut(s)	213, 308, 349
MluCI	AATT	3 cut(s)	20, 36, 448
MlyI	GAGTC	2 cut(s)	43, 194
MnlI	CCTC	3 cut(s)	99, 132, 448
MseI	TTAA	3 cut(s)	35, 422, 517
MspA1I	CMGCKG	1 cut(s)	85
MspR9I	CCNGG	2 cut(s)	226, 369
MvaI	CCWGG	2 cut(s)	226, 369
NdeII	GATC	2 cut(s)	265, 360
NlaIII	CATG	3 cut(s)	16, 47, 242
NlaIV	GGNNCC	1 cut(s)	346
PfeI	GAWTC	2 cut(s)	229, 287
PkrI	GCNGC	1 cut(s)	244
PleI	GAGTC	2 cut(s)	43, 193
PpsI	GAGTC	2 cut(s)	43, 193
Psp124BI	GAGCTC	1 cut(s)	213
Psp6I	CCWGG	2 cut(s)	224, 367
PspEI	GGTNACC	1 cut(s)	388
PspGI	CCWGG	2 cut(s)	224, 367
PspN4I	GGNNCC	1 cut(s)	346
PsuI	RGATCY	1 cut(s)	360
PvuII	CAGCTG	1 cut(s)	85
SacI	GAGCTC	1 cut(s)	213
SaqAI	TTAA	3 cut(s)	35, 422, 517
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	2 cut(s)	265, 360
SchI	GAGTC	2 cut(s)	43, 194
ScrFI	CCNGG	2 cut(s)	226, 369
SduI	GDGCHC	3 cut(s)	213, 308, 349
SetI	ASST	7 cut(s)	58, 87, 151, 213, 346, 409, 446
SfcI	CTRYAG	1 cut(s)	299
SmlI	CTYRAG	1 cut(s)	51
SmoI	CTYRAG	1 cut(s)	51
SpeI	ACTAGT	1 cut(s)	164
Sse9I	AATT	3 cut(s)	20, 36, 448
SspMI	CTAG	2 cut(s)	71, 165
SstI	GAGCTC	1 cut(s)	213
StyD4I	CCNGG	2 cut(s)	224, 367
StyI	CCWWGG	1 cut(s)	384
TaqI	TCGA	3 cut(s)	151, 188, 279
TasI	AATT	3 cut(s)	20, 36, 448
TfiI	GAWTC	2 cut(s)	229, 287
Tru1I	TTAA	3 cut(s)	35, 422, 517
Tru9I	TTAA	3 cut(s)	35, 422, 517
TseI	GCWGC	1 cut(s)	242
TspDTI	ATGAA	4 cut(s)	29, 209, 227, 326
XapI	RAATTY	1 cut(s)	448
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82
XspI	CTAG	2 cut(s)	71, 165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.