Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003173

Physical Location & Seq

Genomic Coordinates Forward (+)

31495447 .. 31497147

Gene Structure 1701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0287900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1701 bp

ATGGAGATAGTTGACAACGAAGATGTAGCTAGTTGGGTGTCTGACAGCCTCTCAGTGCAACCTAACAAGATTCCATTATACATTACTCTGGAACGCAGCTTATCAAGATCTGTAAGTGGAAGTAATCAAGGCATGAATAGTAGACCTAACCCATCTTTTCAGTATGATGATGTTGTCTCAACAATGTTCTCTACTGAGCTTGAAGATCAGAGTCCAATTGCATTGAGTTCCCCGCATGAGCCAATAGTAGTAAACTCTGGGTTGGATAATGGTGATAATGTCTCATACGAAAATAGAGAGGAAGATGAGTTTCCACATGCCAATTGGGATAATGAGAGTCCAATGGACGATGTAGAAATTGAAACTGAGCAACCTACGAATGCTAACTCTACTCCATCATCTTCTTATCTTAGCAAGAGAAGGCGCATAGAAGACTATGAGAATGTTGCATTTGTGGACACCAATGAAGATATTTTGGTAGGTCAGTTATATCCGAGTAAGAAAGCCTTGAAACAACATTTGGGCATGCTCGCAATAAGAAAGAATTACGAGTTTAAAGTGAACAAATCAGCTAGTGATCGGTTTGAAGTTAGGTGTGTGGATCATACCTGTAAGTGGCGACTCCGTGCAATAAAGCTACAAGACTTGGCCTATTTTGAAGTAAGAAAGTTTCATAATGAACATTCTTGTTCGTTGGATATTATTCATCATGATCATCGACAAGCAAGCAGCTCCCTAATTGGTATCTTTGTCAAGTCAAAGTTTGAGGGAGGAACCTCGCGTATATACAGACCTAGAGATATCATTGATGATGCGCGTGTCCAACTTGGAGTTAATATGGGCTATAATAAAGCTTGGAGGGCAAGAGAAGCAGCACTAGAAATTGCAAGGGGATCACCAGAGGAATCATTTGCTATACTTCCAACATATTGTGCTATGTTAGAGCGCAAAAATCAAGGTACAATAACACACATAGAAACTGATGAACATAATCACTTTCTATACTTTTTCATGGCAATTGGAGCCTCAATTAGAGGATTTCGTGATTCTATGAGGCCCGTGATCGCTATAGATGGTACATTTTTGAAAGGAAAGTACTTTGGAACCATGTTTGTGGCTGCATGCCAAGATGGAGAGAATCAAATATATCCTTTGGCATTTGGGGTGGTAGACTCGGAAAATGATGCCTCATGGTCATGGTTTTTGACAAAATTGAGAGGGGCCATTGGAGTTGTAGAGAACTTGGTTTTTATATCTGATCGACATGGAAGCATTGCCAAAGCTGTGGATAATGTTTTTCCTGAAGCACATCATGGAGCCTGCATCTTTCATATAGCTAACAACCTGCAATCAAAGTTTGGCAAAAAAATGAAGATCCTCAAGTTATATTACACAGCAGCAAAGAAGTACCAAGTATCCGAGTTCAATACATTGATGGATGACATTCGAAAAATAAAAGATGGAGAAGTCTGTAAATATCTTGAAGACATTGGGTGTCATAAGTGGGCACGAGCTCATTTTATGGGGTACAGATACAACATGATGACATCCAACATTGTTGAATCTATGAACTCGAAGCTTAAAGATGCTAGAAAACTACCAATTACTGCTTTAGTGGATCACCTAAGAGAGGTGCTTCAACAATGGTTTGTTGAACGACGTGATGCAGCAAGCTCCCTTAATACACACTTAACCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

566

Amino Acids

64.58

Weight (kDa)

6.15

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DBD_Tnp_Mut	PF03108	159 - 221	1.9e-11	MuDR family transposase
MULE	PF10551	354 - 448	2.3e-25	MULE transposase domain
Transposase_mut	PF00872	374 - 531	2.3e-13	Transposase, Mutator family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15351 AT3G15351 AT3G15351 AT3G15351 AT3G15351 AT3G15351 AT3G15351
fragaria_vesca	FvH4_7g10630 FvH4_7g10630
malus_domestica	MD01G1029500.v1.1 MD07G1111400.v1.1 MD10G1232800.v1.1
prunus_persica	Prupe.2G134800_v2.0.a1 Prupe.2G134800_v2.0.a1 Prupe.2G134800_v2.0.a1
pyrus_communis	pycom01g05780 pycom07g09620
rosa_chinensis	RchiOBHm_Chr1g0348571
rosa_laevigata	RLG00000019092 RLG00000028638
rosa_multiflora	Rmu_sc0008668.1_g000003
rosa_roxburghii	Rroxscaffold_4G00306920 Rroxscaffold_4G00306940
rosa_rugosa	Rorug01G0195200 Rorug01G0195300 Rorug01G0195400 Rorug02G0287600 Rorug02G0287700 Rorug02G0287800 Rorug02G0287900
rosa_samantha	Rh1AG213200 Rh1BG179600 Rh1CG197500 Rh1DG209700 Rh2AG339300
rosa_wichuraiana	Rw1G018030 Rw1G018050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1353
AccI	GTMKAC	2 cut(s)	142, 1170
AccII	CGCG	2 cut(s)	781, 817
AciI	CCGC	1 cut(s)	233
AclWI	GGATC	4 cut(s)	609, 901, 1369, 1626
AcuI	CTGAAG	1 cut(s)	1323
AfaI	GTAC	5 cut(s)	961, 1078, 1097, 1409, 1529
AfiI	CCNNNNNNNGG	2 cut(s)	615, 1630
AjiI	CACGTC	1 cut(s)	1661
AjuI	GAANNNNNNNTTGG	2 cut(s)	503, 535
Alw21I	GWGCWC	1 cut(s)	1516
Alw26I	GTCTC	2 cut(s)	181, 286
AlwI	GGATC	4 cut(s)	609, 901, 1369, 1626
AoxI	GGCC	3 cut(s)	648, 1055, 1221
ApeKI	GCWGC	6 cut(s)	96, 729, 872, 1118, 1397, 1667
AspLEI	GCGC	3 cut(s)	426, 817, 948
AspS9I	GGNCC	2 cut(s)	1056, 1221
AsuHPI	GGTGA	3 cut(s)	284, 888, 1613
AsuII	TTCGAA	1 cut(s)	1447
BaeGI	GKGCMC	1 cut(s)	1510
BanII	GRGCYC	1 cut(s)	1516
BauI	CACGAG	1 cut(s)	1509
BbsI	GAAGAC	2 cut(s)	438, 1491
Bbv12I	GWGCWC	1 cut(s)	1516
BbvI	GCAGC	6 cut(s)	108, 741, 884, 1105, 1409, 1679
BccI	CCATC	6 cut(s)	160, 403, 1067, 1124, 1429, 1454
BciVI	GTATCC	1 cut(s)	1426
BclI	TGATCA	1 cut(s)	712
BcoDI	GTCTC	2 cut(s)	181, 286
BfaI	CTAG	5 cut(s)	30, 573, 795, 878, 1590
BfmI	CTRYAG	1 cut(s)	1068
BfuAI	ACCTGC	1 cut(s)	1353
BfuI	GTATCC	1 cut(s)	1426
BglII	AGATCT	1 cut(s)	107
BisI	GCNGC	6 cut(s)	97, 730, 873, 1119, 1398, 1668
BlsI	GCNGC	6 cut(s)	98, 731, 874, 1120, 1399, 1669
BmcAI	AGTACT	1 cut(s)	1097
BmgBI	CACGTC	1 cut(s)	1661
BmgT120I	GGNCC	2 cut(s)	1056, 1221
BmiI	GGNNCC	5 cut(s)	775, 1024, 1105, 1222, 1318
BmsI	GCATC	5 cut(s)	802, 1174, 1332, 1576, 1654
BpiI	GAAGAC	2 cut(s)	438, 1491
Bpu14I	TTCGAA	1 cut(s)	1447
BpuEI	CTTGAG	1 cut(s)	1364
Bsc4I	CCNNNNNNNGG	2 cut(s)	615, 1630
Bse3DI	GCAATG	1 cut(s)	1272
BseGI	GGATG	2 cut(s)	1444, 1547
BseLI	CCNNNNNNNGG	2 cut(s)	615, 1630
BseMI	GCAATG	1 cut(s)	1272
BseMII	CTCAG	3 cut(s)	66, 186, 357
BseSI	GKGCMC	1 cut(s)	1510
BseXI	GCAGC	6 cut(s)	108, 741, 884, 1105, 1409, 1679
Bsh1236I	CGCG	2 cut(s)	781, 817
BshFI	GGCC	3 cut(s)	650, 1057, 1223
BsiHKAI	GWGCWC	1 cut(s)	1516
BslI	CCNNNNNNNGG	2 cut(s)	615, 1630
BsmAI	GTCTC	2 cut(s)	181, 286
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	3 cut(s)	650, 1057, 1223
Bsp119I	TTCGAA	1 cut(s)	1447
Bsp1286I	GDGCHC	2 cut(s)	1510, 1516
BspACI	CCGC	1 cut(s)	233
BspANI	GGCC	3 cut(s)	650, 1057, 1223
BspCNI	CTCAG	3 cut(s)	65, 187, 358
BspFNI	CGCG	2 cut(s)	781, 817
BspHI	TCATGA	1 cut(s)	709
BspLI	GGNNCC	5 cut(s)	775, 1024, 1105, 1222, 1318
BspMI	ACCTGC	1 cut(s)	1353
BspPI	GGATC	4 cut(s)	609, 901, 1369, 1626
BspT104I	TTCGAA	1 cut(s)	1447
BsrDI	GCAATG	1 cut(s)	1272
BssSI	CACGAG	1 cut(s)	1509
Bst2BI	CACGAG	1 cut(s)	1509
BstBI	TTCGAA	1 cut(s)	1447
BstC8I	GCNNGC	6 cut(s)	527, 531, 727, 1123, 1321, 1672
BstDEI	CTNAG	5 cut(s)	52, 195, 366, 410, 1625
BstENI	CCTNNNNNAGG	1 cut(s)	1628
BstF5I	GGATG	2 cut(s)	1444, 1547
BstFNI	CGCG	2 cut(s)	781, 817
BstHHI	GCGC	3 cut(s)	426, 817, 948
BstMAI	GTCTC	2 cut(s)	181, 286
BstMWI	GCNNNNNNNGC	3 cut(s)	860, 869, 1022
BstNSI	RCATGY	3 cut(s)	320, 529, 1125
BstSFI	CTRYAG	1 cut(s)	1068
BstSLI	GKGCMC	1 cut(s)	1510
BstUI	CGCG	2 cut(s)	781, 817
BstV1I	GCAGC	6 cut(s)	108, 741, 884, 1105, 1409, 1679
BstV2I	GAAGAC	2 cut(s)	438, 1491
BstX2I	RGATCY	2 cut(s)	107, 1374
BstXI	CCANNNNNNTGG	2 cut(s)	1114, 1285
BstYI	RGATCY	2 cut(s)	107, 1374
BsuI	GTATCC	1 cut(s)	1426
BsuRI	GGCC	3 cut(s)	650, 1057, 1223
BtrI	CACGTC	1 cut(s)	1661
BtsCI	GGATG	2 cut(s)	1444, 1547
BtsIMutI	CAGTG	1 cut(s)	60
BveI	ACCTGC	1 cut(s)	1353
Cac8I	GCNNGC	6 cut(s)	527, 531, 727, 1123, 1321, 1672
CciI	TCATGA	1 cut(s)	709
CfoI	GCGC	3 cut(s)	426, 817, 948
Cfr13I	GGNCC	2 cut(s)	1056, 1221
Csp6I	GTAC	5 cut(s)	960, 1077, 1096, 1408, 1528
CviQI	GTAC	5 cut(s)	960, 1077, 1096, 1408, 1528
DdeI	CTNAG	5 cut(s)	52, 195, 366, 410, 1625
DraI	TTTAAA	1 cut(s)	556
Ecl136II	GAGCTC	1 cut(s)	1514
Eco24I	GRGCYC	1 cut(s)	1516
Eco32I	GATATC	1 cut(s)	802
Eco53kI	GAGCTC	1 cut(s)	1514
Eco57I	CTGAAG	1 cut(s)	1323
EcoICRI	GAGCTC	1 cut(s)	1514
EcoNI	CCTNNNNNAGG	1 cut(s)	1628
EcoRV	GATATC	1 cut(s)	802
EcoT38I	GRGCYC	1 cut(s)	1516
FalI	AAGNNNNNCTT	2 cut(s)	491, 523
FauI	CCCGC	1 cut(s)	240
FbaI	TGATCA	1 cut(s)	712
FblI	GTMKAC	2 cut(s)	142, 1170
Fnu4HI	GCNGC	6 cut(s)	97, 730, 873, 1119, 1398, 1668
FokI	GGATG	2 cut(s)	1451, 1534
FriOI	GRGCYC	1 cut(s)	1516
Fsp4HI	GCNGC	6 cut(s)	97, 730, 873, 1119, 1398, 1668
FspBI	CTAG	5 cut(s)	30, 573, 795, 878, 1590
GlaI	GCGC	3 cut(s)	425, 816, 947
GluI	GCNGC	6 cut(s)	97, 730, 873, 1119, 1398, 1668
HaeIII	GGCC	3 cut(s)	650, 1057, 1223
HhaI	GCGC	3 cut(s)	426, 817, 948
Hin6I	GCGC	3 cut(s)	424, 815, 946
HinP1I	GCGC	3 cut(s)	424, 815, 946
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HindIII	AAGCTT	2 cut(s)	852, 1577
HinfI	GANTC	9 cut(s)	70, 211, 337, 621, 905, 1046, 1138, 1172, 1562
HphI	GGTGA	3 cut(s)	284, 888, 1613
Hpy166II	GTNNAC	6 cut(s)	13, 143, 253, 457, 562, 1171
Hpy188I	TCNGA	6 cut(s)	43, 210, 495, 1177, 1258, 1420
Hpy188III	TCNNGA	6 cut(s)	89, 105, 710, 1043, 1301, 1481
Hpy8I	GTNNAC	6 cut(s)	13, 143, 253, 457, 562, 1171
Hpy99I	CGWCG	1 cut(s)	1662
HpyAV	CCTTC	1 cut(s)	414
HpyCH4IV	ACGT	1 cut(s)	1660
HpyCH4V	TGCA	9 cut(s)	58, 221, 449, 629, 887, 1121, 1323, 1348, 1667
HpyF10VI	GCNNNNNNNGC	3 cut(s)	860, 869, 1022
HpyF3I	CTNAG	5 cut(s)	52, 195, 366, 410, 1625
HpySE526I	ACGT	1 cut(s)	1660
HspAI	GCGC	3 cut(s)	424, 815, 946
Ksp22I	TGATCA	1 cut(s)	712
LmnI	GCTCC	4 cut(s)	737, 1022, 1316, 1679
LpnPI	CCDG	7 cut(s)	74, 243, 622, 912, 1314, 1333, 1358
Lsp1109I	GCAGC	6 cut(s)	108, 741, 884, 1105, 1409, 1679
LweI	GCATC	5 cut(s)	802, 1174, 1332, 1576, 1654
MaeI	CTAG	5 cut(s)	30, 573, 795, 878, 1590
MaeII	ACGT	1 cut(s)	1660
MboII	GAAGA	8 cut(s)	32, 215, 314, 393, 443, 479, 1384, 1496
MfeI	CAATTG	3 cut(s)	216, 322, 1017
MflI	RGATCY	2 cut(s)	107, 1374
MhlI	GDGCHC	2 cut(s)	1510, 1516
MlyI	GAGTC	4 cut(s)	220, 346, 615, 1166
MmeI	TCCRAC	5 cut(s)	243, 675, 847, 947, 1575
MseI	TTAA	5 cut(s)	555, 834, 1581, 1680, 1691
MslI	CAYNNNNRTG	2 cut(s)	1112, 1195
MunI	CAATTG	3 cut(s)	216, 322, 1017
Mva1269I	GAATGC	1 cut(s)	385
MvnI	CGCG	2 cut(s)	781, 817
MwoI	GCNNNNNNNGC	3 cut(s)	860, 869, 1022
NlaIV	GGNNCC	5 cut(s)	775, 1024, 1105, 1222, 1318
NspI	RCATGY	3 cut(s)	320, 529, 1125
NspV	TTCGAA	1 cut(s)	1447
PaeI	GCATGC	2 cut(s)	529, 1125
PagI	TCATGA	1 cut(s)	709
PctI	GAATGC	1 cut(s)	385
PfeI	GAWTC	5 cut(s)	70, 905, 1046, 1138, 1562
PkrI	GCNGC	6 cut(s)	98, 731, 874, 1120, 1399, 1669
PleI	GAGTC	4 cut(s)	219, 345, 615, 1166
PpsI	GAGTC	4 cut(s)	219, 345, 615, 1166
Psp124BI	GAGCTC	1 cut(s)	1516
PspN4I	GGNNCC	5 cut(s)	775, 1024, 1105, 1222, 1318
PspPI	GGNCC	2 cut(s)	1056, 1221
PsuI	RGATCY	2 cut(s)	107, 1374
RsaI	GTAC	5 cut(s)	961, 1078, 1097, 1409, 1529
RsaNI	GTAC	5 cut(s)	960, 1077, 1096, 1408, 1528
RseI	CAYNNNNRTG	2 cut(s)	1112, 1195
SacI	GAGCTC	1 cut(s)	1516
SaqAI	TTAA	5 cut(s)	555, 834, 1581, 1680, 1691
SatI	GCNGC	6 cut(s)	97, 730, 873, 1119, 1398, 1668
Sau96I	GGNCC	2 cut(s)	1056, 1221
ScaI	AGTACT	1 cut(s)	1097
SchI	GAGTC	4 cut(s)	220, 346, 615, 1166
SduI	GDGCHC	2 cut(s)	1510, 1516
SfaNI	GCATC	5 cut(s)	802, 1174, 1332, 1576, 1654
SfcI	CTRYAG	1 cut(s)	1068
SfuI	TTCGAA	1 cut(s)	1447
SmiMI	CAYNNNNRTG	2 cut(s)	1112, 1195
SmlI	CTYRAG	1 cut(s)	1379
SmoI	CTYRAG	1 cut(s)	1379
SphI	GCATGC	2 cut(s)	529, 1125
SsiI	CCGC	1 cut(s)	233
SspMI	CTAG	5 cut(s)	30, 573, 795, 878, 1590
SstI	GAGCTC	1 cut(s)	1516
TaiI	ACGT	1 cut(s)	1663
TaqI	TCGA	4 cut(s)	718, 1261, 1447, 1574
TatI	WGTACW	1 cut(s)	1095
TfiI	GAWTC	5 cut(s)	70, 905, 1046, 1138, 1562
Tru1I	TTAA	5 cut(s)	555, 834, 1581, 1680, 1691
Tru9I	TTAA	5 cut(s)	555, 834, 1581, 1680, 1691
TscAI	CASTG	1 cut(s)	60
TseI	GCWGC	6 cut(s)	96, 729, 872, 1118, 1397, 1667
TspGWI	ACGGA	1 cut(s)	614
TspRI	CASTG	1 cut(s)	60
XagI	CCTNNNNNAGG	1 cut(s)	1628
XceI	RCATGY	3 cut(s)	320, 529, 1125
XcmI	CCANNNNNNNNNTGG	1 cut(s)	321
XmiI	GTMKAC	2 cut(s)	142, 1170
XspI	CTAG	5 cut(s)	30, 573, 795, 878, 1590
ZrmI	AGTACT	1 cut(s)	1097

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.