Rorug02G0287800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003173
Physical Location & Seq
Forward (+)
31486475 .. 31489742
3268 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0287800.1

Sequence Viewer

Length: 783 bp
ATGCCGCAGGGAGATTATATAGATCTTCACAGGAAGCGATATGGGTACAGACCTGACCACTTTGAGCGCAAGCGCAAGAAGGAGGCTCGTGAGGTCCACAAACGCTCTGAAATTGCGCAAAAGGCTCTGGGTATTAAGGGCAAGATGTTTGCCAAGAAACGCTATGCAGAAAAGGCTCTAATGAAGAAAACATTGGCTATGCACGAGGAGTCATCAACTAGACACAAGGTTGATGATGATGTTCATGAAGGAGCTGTTCCAACATATCTGTTGGATCGTGACAATACAACACGAGCAAAGACTCTTAGCAATTCCATCAAGCAAAAACGGAAAGAGAAAGCTGGGAAATGGGAAGTCCCTCTGCCTAAGGTAAGGCCTGTGGCTGAAGATGAGATGTTTAAAGTGCTTAGAACGGGCAAACGCAAGACTAAGCAATGGAAGAGGATGATCACAAAAGCCACATTTGTGGGACCTGGTTTTACAAGGAAACCTCCCAAGTATGAGCGGTTTATCCGGCCCAGTGGGTTGCGATTCACTAAAGCTCACGTGACACACCCTGAACTCAAATGTACTTTTAACCTTGAGATCATTGGTGTGAAGAAAAACCCTAATGGTCAAATGTACACCTCTCTTGGTGTCTTGACCAAGGGAACCATCATTGAGGTGAATGTAAGTGAACTTGGTCTAGTCACACCTAATGGGAAAGTTGTATGGGGGAAATATGCTCAGGTGACGAATAATCCAGAGAACGATGGATGTGTAAATGCAGTTCTGCTTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

260

Amino Acids

29.84

Weight (kDa)

10.11

Isoelectric Point (pI)

37.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8e PF01201 35 - 259 3.7e-41 Ribosomal protein S8e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 117
AccBSI CCGCTC 1 cut(s) 505
AciI CCGC 2 cut(s) 5, 505
AclWI GGATC 1 cut(s) 282
AcuI CTGAAG 1 cut(s) 405
AcvI CACGTG 1 cut(s) 547
AfaI GTAC 3 cut(s) 47, 571, 623
AjnI CCWGG 1 cut(s) 472
AjuI GAANNNNNNNTTGG 2 cut(s) 176, 208
AleI CACNNNNGTG 1 cut(s) 464
AluBI AGCT 3 cut(s) 254, 341, 542
AluI AGCT 3 cut(s) 254, 341, 542
AlwI GGATC 1 cut(s) 282
AoxI GGCC 2 cut(s) 374, 515
AspLEI GCGC 3 cut(s) 69, 75, 118
AspS9I GGNCC 3 cut(s) 94, 470, 516
AsuHPI GGTGA 2 cut(s) 676, 742
AvaII GGWCC 2 cut(s) 94, 470
AxyI CCTNAGG 1 cut(s) 366
BauI CACGAG 3 cut(s) 87, 203, 291
BbrPI CACGTG 1 cut(s) 547
BccI CCATC 3 cut(s) 323, 662, 746
BciT130I CCWGG 1 cut(s) 474
BclI TGATCA 1 cut(s) 447
BfaI CTAG 2 cut(s) 219, 686
BglII AGATCT 1 cut(s) 22
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 474
Bme18I GGWCC 2 cut(s) 94, 470
BmgT120I GGNCC 3 cut(s) 94, 470, 516
BmiI GGNNCC 2 cut(s) 471, 652
BmrFI CCNGG 1 cut(s) 474
BmrI ACTGGG 1 cut(s) 513
BmuI ACTGGG 1 cut(s) 513
Bpu10I CCTNAGC 1 cut(s) 726
BpuEI CTTGAG 1 cut(s) 602
BsaAI YACGTR 1 cut(s) 547
BsaJI CCNNGG 1 cut(s) 645
Bse1I ACTGG 1 cut(s) 519
Bse21I CCTNAGG 1 cut(s) 366
Bse3DI GCAATG 1 cut(s) 440
BseBI CCWGG 1 cut(s) 474
BseDI CCNNGG 1 cut(s) 645
BseGI GGATG 2 cut(s) 450, 761
BseMI GCAATG 1 cut(s) 440
BseMII CTCAG 1 cut(s) 740
BseNI ACTGG 1 cut(s) 519
BseRI GAGGAG 1 cut(s) 221
BseYI CCCAGC 1 cut(s) 341
BshFI GGCC 2 cut(s) 376, 517
BsiSI CCGG 1 cut(s) 514
BslFI GGGAC 2 cut(s) 341, 483
BsmFI GGGAC 2 cut(s) 341, 483
BsnI GGCC 2 cut(s) 376, 517
Bsp1407I TGTACA 1 cut(s) 621
Bsp143I GATC 4 cut(s) 22, 274, 447, 585
BspACI CCGC 2 cut(s) 5, 505
BspANI GGCC 2 cut(s) 376, 517
BspCNI CTCAG 1 cut(s) 739
BspHI TCATGA 1 cut(s) 244
BspLI GGNNCC 2 cut(s) 471, 652
BspPI GGATC 1 cut(s) 282
BsrBI CCGCTC 1 cut(s) 505
BsrDI GCAATG 1 cut(s) 440
BsrGI TGTACA 1 cut(s) 621
BsrI ACTGG 1 cut(s) 519
BssECI CCNNGG 1 cut(s) 645
BssMI GATC 4 cut(s) 22, 274, 447, 585
BssSI CACGAG 3 cut(s) 87, 203, 291
BssT1I CCWWGG 1 cut(s) 645
Bst2BI CACGAG 3 cut(s) 87, 203, 291
Bst2UI CCWGG 1 cut(s) 474
Bst6I CTCTTC 1 cut(s) 434
BstAUI TGTACA 1 cut(s) 621
BstBAI YACGTR 1 cut(s) 547
BstC8I GCNNGC 1 cut(s) 71
BstDEI CTNAG 5 cut(s) 305, 366, 407, 429, 726
BstF5I GGATG 2 cut(s) 450, 761
BstHHI GCGC 3 cut(s) 69, 75, 118
BstKTI GATC 4 cut(s) 25, 277, 450, 588
BstMBI GATC 4 cut(s) 22, 274, 447, 585
BstMWI GCNNNNNNNGC 2 cut(s) 122, 173
BstNI CCWGG 1 cut(s) 474
BstSCI CCNGG 1 cut(s) 472
BstX2I RGATCY 1 cut(s) 22
BstXI CCANNNNNNTGG 1 cut(s) 466
BstYI RGATCY 1 cut(s) 22
Bsu36I CCTNAGG 1 cut(s) 366
BsuRI GGCC 2 cut(s) 376, 517
BtsCI GGATG 2 cut(s) 450, 761
BtsIMutI CAGTG 1 cut(s) 526
Cac8I GCNNGC 1 cut(s) 71
CciI TCATGA 1 cut(s) 244
CfoI GCGC 3 cut(s) 69, 75, 118
Cfr13I GGNCC 3 cut(s) 94, 470, 516
CsiI ACCWGGT 1 cut(s) 472
Csp6I GTAC 3 cut(s) 46, 570, 622
CviAII CATG 1 cut(s) 245
CviQI GTAC 3 cut(s) 46, 570, 622
DdeI CTNAG 5 cut(s) 305, 366, 407, 429, 726
DpnI GATC 4 cut(s) 24, 276, 449, 587
DpnII GATC 4 cut(s) 22, 274, 447, 585
DraI TTTAAA 1 cut(s) 400
Eam1104I CTCTTC 1 cut(s) 434
EarI CTCTTC 1 cut(s) 434
Eco130I CCWWGG 1 cut(s) 645
Eco147I AGGCCT 1 cut(s) 376
Eco47I GGWCC 2 cut(s) 94, 470
Eco57I CTGAAG 1 cut(s) 405
Eco72I CACGTG 1 cut(s) 547
Eco81I CCTNAGG 1 cut(s) 366
EcoO109I RGGNCCY 1 cut(s) 470
EcoRII CCWGG 1 cut(s) 472
EcoT14I CCWWGG 1 cut(s) 645
ErhI CCWWGG 1 cut(s) 645
FaeI CATG 1 cut(s) 248
FaqI GGGAC 2 cut(s) 341, 483
FatI CATG 1 cut(s) 244
FbaI TGATCA 1 cut(s) 447
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 2 cut(s) 457, 768
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 2 cut(s) 219, 686
FspI TGCGCA 1 cut(s) 117
GlaI GCGC 3 cut(s) 68, 74, 117
GluI GCNGC 1 cut(s) 5
GsaI CCCAGC 1 cut(s) 345
HaeIII GGCC 2 cut(s) 376, 517
HapII CCGG 1 cut(s) 514
HhaI GCGC 3 cut(s) 69, 75, 118
Hin1II CATG 1 cut(s) 248
Hin6I GCGC 3 cut(s) 67, 73, 116
HinP1I GCGC 3 cut(s) 67, 73, 116
HinfI GANTC 3 cut(s) 209, 301, 531
HpaII CCGG 1 cut(s) 514
HphI GGTGA 2 cut(s) 676, 742
Hpy166II GTNNAC 3 cut(s) 97, 624, 677
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 5 cut(s) 89, 245, 278, 640, 743
Hpy8I GTNNAC 3 cut(s) 97, 624, 677
HpyAV CCTTC 2 cut(s) 73, 242
HpyCH4IV ACGT 1 cut(s) 546
HpyCH4V TGCA 3 cut(s) 167, 202, 767
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 173
HpyF3I CTNAG 5 cut(s) 305, 366, 407, 429, 726
HpySE526I ACGT 1 cut(s) 546
Hsp92II CATG 1 cut(s) 248
HspAI GCGC 3 cut(s) 67, 73, 116
Ksp22I TGATCA 1 cut(s) 447
Kzo9I GATC 4 cut(s) 22, 274, 447, 585
LmnI GCTCC 1 cut(s) 251
MabI ACCWGGT 1 cut(s) 472
MaeI CTAG 2 cut(s) 219, 686
MaeII ACGT 1 cut(s) 546
MaeIII GTNAC 4 cut(s) 278, 547, 688, 730
MalI GATC 4 cut(s) 24, 276, 449, 587
MbiI CCGCTC 1 cut(s) 505
MboI GATC 4 cut(s) 22, 274, 447, 585
MboII GAAGA 5 cut(s) 17, 196, 398, 451, 610
MflI RGATCY 1 cut(s) 22
MluCI AATT 2 cut(s) 111, 310
MlyI GAGTC 2 cut(s) 218, 295
MmeI TCCRAC 2 cut(s) 252, 284
MnlI CCTC 8 cut(s) 76, 85, 199, 369, 435, 501, 637, 655
MseI TTAA 3 cut(s) 135, 399, 576
MslI CAYNNNNRTG 3 cut(s) 464, 593, 662
MspI CCGG 1 cut(s) 514
MspR9I CCNGG 1 cut(s) 474
MvaI CCWGG 1 cut(s) 474
MwoI GCNNNNNNNGC 2 cut(s) 122, 173
NdeII GATC 4 cut(s) 22, 274, 447, 585
NlaIII CATG 1 cut(s) 248
NlaIV GGNNCC 2 cut(s) 471, 652
NmuCI GTSAC 4 cut(s) 278, 547, 688, 730
NsbI TGCGCA 1 cut(s) 117
OliI CACNNNNGTG 1 cut(s) 464
PagI TCATGA 1 cut(s) 244
PceI AGGCCT 1 cut(s) 376
PfeI GAWTC 1 cut(s) 531
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 2 cut(s) 217, 295
PmaCI CACGTG 1 cut(s) 547
PmlI CACGTG 1 cut(s) 547
PpsI GAGTC 2 cut(s) 217, 295
Ppu21I YACGTR 1 cut(s) 547
PpuMI RGGWCCY 1 cut(s) 470
Psp5II RGGWCCY 1 cut(s) 470
Psp6I CCWGG 1 cut(s) 472
PspCI CACGTG 1 cut(s) 547
PspFI CCCAGC 1 cut(s) 341
PspGI CCWGG 1 cut(s) 472
PspN4I GGNNCC 2 cut(s) 471, 652
PspPI GGNCC 3 cut(s) 94, 470, 516
PspPPI RGGWCCY 1 cut(s) 470
PsrI GAACNNNNNNTAC 1 cut(s) 753
PsuI RGATCY 1 cut(s) 22
RsaI GTAC 3 cut(s) 47, 571, 623
RsaNI GTAC 3 cut(s) 46, 570, 622
RseI CAYNNNNRTG 3 cut(s) 464, 593, 662
SaqAI TTAA 3 cut(s) 135, 399, 576
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 4 cut(s) 22, 274, 447, 585
Sau96I GGNCC 3 cut(s) 94, 470, 516
SchI GAGTC 2 cut(s) 218, 295
ScrFI CCNGG 1 cut(s) 474
SexAI ACCWGGT 1 cut(s) 472
SinI GGWCC 2 cut(s) 94, 470
SmiMI CAYNNNNRTG 3 cut(s) 464, 593, 662
SmlI CTYRAG 1 cut(s) 581
SmoI CTYRAG 1 cut(s) 581
Sse9I AATT 2 cut(s) 111, 310
SseBI AGGCCT 1 cut(s) 376
SsiI CCGC 2 cut(s) 5, 505
SspMI CTAG 2 cut(s) 219, 686
StuI AGGCCT 1 cut(s) 376
StyD4I CCNGG 1 cut(s) 472
StyI CCWWGG 1 cut(s) 645
TaiI ACGT 1 cut(s) 549
TasI AATT 2 cut(s) 111, 310
TatI WGTACW 2 cut(s) 569, 621
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 1 cut(s) 531
Tru1I TTAA 3 cut(s) 135, 399, 576
Tru9I TTAA 3 cut(s) 135, 399, 576
TscAI CASTG 1 cut(s) 526
TseFI GTSAC 4 cut(s) 278, 547, 688, 730
Tsp45I GTSAC 4 cut(s) 278, 547, 688, 730
TspDTI ATGAA 3 cut(s) 197, 233, 261
TspGWI ACGGA 1 cut(s) 343
TspRI CASTG 1 cut(s) 526
VpaK11BI GGWCC 2 cut(s) 94, 470
XspI CTAG 2 cut(s) 219, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.