Rorug01G0195300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0003173
Physical Location & Seq
Reverse (-)
27422634 .. 27423910
1277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0195300.1

Sequence Viewer

Length: 345 bp
ATGGAGACCTGCCTTCAATCTCTCTTGATTTCCCAGTTCAGAATCGCCTCCTCCATCATCCTCAGGTTGCAGGTGCTTCAAGATTCAACCAACTACGGTGGTGGCTTGAATGGAGTTGCCCACATTCAAGAGGCCGTGCTGCTCAAGCAGATGGAGTCTTTGCAAAAGCTCTTGCTTTCCATGAACAACACCATCTGGGTTTGTGCAGCTGAGTTAGACCGGGTTTGTGCACTTGCCGGGAAGTTCTTGGGCAGCCCAATTTCGTTGATATTCATGAAACTGTTCCCTGATATTCATAACACAAGACTCTGGCTGGATTTCAATGGCGGTGGCCATGGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.56

Weight (kDa)

6.81

Isoelectric Point (pI)

47.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CA109-like PF15011 5 - 65 2.3e-10 Ribosome biogenesis protein C1orf109-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 61
Acc36I ACCTGC 2 cut(s) 17, 61
AciI CCGC 1 cut(s) 327
AcoI YGGCCR 1 cut(s) 331
AgsI TTSAA 6 cut(s) 17, 80, 87, 109, 128, 322
AluBI AGCT 2 cut(s) 169, 209
AluI AGCT 2 cut(s) 169, 209
Alw21I GWGCWC 1 cut(s) 232
Alw44I GTGCAC 1 cut(s) 228
AoxI GGCC 3 cut(s) 132, 331, 337
ApaLI GTGCAC 1 cut(s) 228
ApeKI GCWGC 3 cut(s) 139, 206, 252
Asp700I GAANNNNTTC 1 cut(s) 281
AspS9I GGNCC 1 cut(s) 338
AsuC2I CCSGG 2 cut(s) 221, 238
AxyI CCTNAGG 1 cut(s) 62
BaeGI GKGCMC 1 cut(s) 232
BalI TGGCCA 1 cut(s) 333
Bbv12I GWGCWC 1 cut(s) 232
BbvI GCAGC 3 cut(s) 126, 218, 264
BccI CCATC 3 cut(s) 62, 145, 200
BceAI ACGGC 1 cut(s) 119
BcnI CCSGG 2 cut(s) 221, 238
BfuAI ACCTGC 2 cut(s) 17, 61
BisI GCNGC 3 cut(s) 140, 207, 253
BlsI GCNGC 3 cut(s) 141, 208, 254
Bme1390I CCNGG 2 cut(s) 221, 238
BmgT120I GGNCC 1 cut(s) 338
BmrFI CCNGG 2 cut(s) 221, 238
BmrI ACTGGG 1 cut(s) 28
BmuI ACTGGG 1 cut(s) 28
BpuEI CTTGAG 1 cut(s) 128
BpuMI CCSGG 2 cut(s) 221, 238
BsaJI CCNNGG 1 cut(s) 334
Bse1I ACTGG 1 cut(s) 34
Bse21I CCTNAGG 1 cut(s) 62
BseDI CCNNGG 1 cut(s) 334
BseGI GGATG 1 cut(s) 57
BseMII CTCAG 2 cut(s) 76, 201
BseNI ACTGG 1 cut(s) 34
BseRI GAGGAG 1 cut(s) 40
BseSI GKGCMC 1 cut(s) 232
BseXI GCAGC 3 cut(s) 126, 218, 264
BsgI GTGCAG 1 cut(s) 225
BshFI GGCC 3 cut(s) 134, 333, 339
BsiHKAI GWGCWC 1 cut(s) 232
BsiSI CCGG 2 cut(s) 220, 237
BsnI GGCC 3 cut(s) 134, 333, 339
Bsp1286I GDGCHC 1 cut(s) 232
Bsp19I CCATGG 1 cut(s) 334
BspACI CCGC 1 cut(s) 327
BspANI GGCC 3 cut(s) 134, 333, 339
BspCNI CTCAG 2 cut(s) 75, 202
BspHI TCATGA 1 cut(s) 273
BspMI ACCTGC 2 cut(s) 17, 61
BsrI ACTGG 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 334
BssT1I CCWWGG 1 cut(s) 334
Bst4CI ACNGT 2 cut(s) 98, 282
BstDEI CTNAG 2 cut(s) 62, 210
BstDSI CCRYGG 1 cut(s) 334
BstF5I GGATG 1 cut(s) 57
BstMWI GCNNNNNNNGC 1 cut(s) 145
BstSCI CCNGG 2 cut(s) 219, 236
BstSLI GKGCMC 1 cut(s) 232
BstV1I GCAGC 3 cut(s) 126, 218, 264
Bsu36I CCTNAGG 1 cut(s) 62
BsuRI GGCC 3 cut(s) 134, 333, 339
BtgI CCRYGG 1 cut(s) 334
BtsCI GGATG 1 cut(s) 57
BveI ACCTGC 2 cut(s) 17, 61
CciI TCATGA 1 cut(s) 273
Cfr13I GGNCC 1 cut(s) 338
CspCI CAANNNNNGTGG 4 cut(s) 79, 114, 310, 345
CviAII CATG 3 cut(s) 181, 274, 335
CviJI RGCY 8 cut(s) 105, 134, 169, 209, 255, 313, 333, 339
CviKI_1 RGCY 8 cut(s) 105, 134, 169, 209, 255, 313, 333, 339
DdeI CTNAG 2 cut(s) 62, 210
EaeI YGGCCR 1 cut(s) 331
Eco130I CCWWGG 1 cut(s) 334
Eco81I CCTNAGG 1 cut(s) 62
EcoT14I CCWWGG 1 cut(s) 334
ErhI CCWWGG 1 cut(s) 334
FaeI CATG 3 cut(s) 184, 277, 338
FaiI YATR 4 cut(s) 182, 275, 297, 336
FatI CATG 3 cut(s) 180, 273, 334
Fnu4HI GCNGC 3 cut(s) 140, 207, 253
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 3 cut(s) 140, 207, 253
GluI GCNGC 3 cut(s) 140, 207, 253
HaeIII GGCC 3 cut(s) 134, 333, 339
HapII CCGG 2 cut(s) 220, 237
Hin1II CATG 3 cut(s) 184, 277, 338
HinfI GANTC 4 cut(s) 42, 83, 155, 306
HpaII CCGG 2 cut(s) 220, 237
Hpy166II GTNNAC 1 cut(s) 230
Hpy188I TCNGA 1 cut(s) 41
Hpy188III TCNNGA 4 cut(s) 25, 80, 128, 274
Hpy8I GTNNAC 1 cut(s) 230
HpyAV CCTTC 1 cut(s) 23
HpyCH4III ACNGT 2 cut(s) 98, 282
HpyCH4V TGCA 4 cut(s) 70, 163, 206, 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 145
HpyF3I CTNAG 2 cut(s) 62, 210
Hsp92II CATG 3 cut(s) 184, 277, 338
Lsp1109I GCAGC 3 cut(s) 126, 218, 264
MhlI GDGCHC 1 cut(s) 232
MlsI TGGCCA 1 cut(s) 333
MluCI AATT 1 cut(s) 258
MluNI TGGCCA 1 cut(s) 333
MlyI GAGTC 2 cut(s) 164, 300
MnlI CCTC 4 cut(s) 58, 61, 71, 124
Mox20I TGGCCA 1 cut(s) 333
MroXI GAANNNNTTC 1 cut(s) 281
MscI TGGCCA 1 cut(s) 333
Msp20I TGGCCA 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 209
MspI CCGG 2 cut(s) 220, 237
MspR9I CCNGG 2 cut(s) 221, 238
MwoI GCNNNNNNNGC 1 cut(s) 145
NciI CCSGG 2 cut(s) 221, 238
NcoI CCATGG 1 cut(s) 334
NlaIII CATG 3 cut(s) 184, 277, 338
PagI TCATGA 1 cut(s) 273
PaqCI CACCTGC 1 cut(s) 61
PdmI GAANNNNTTC 1 cut(s) 281
PfeI GAWTC 2 cut(s) 42, 83
PkrI GCNGC 3 cut(s) 141, 208, 254
PleI GAGTC 2 cut(s) 163, 300
PpsI GAGTC 2 cut(s) 163, 300
PspPI GGNCC 1 cut(s) 338
PvuII CAGCTG 1 cut(s) 209
SatI GCNGC 3 cut(s) 140, 207, 253
Sau96I GGNCC 1 cut(s) 338
SchI GAGTC 2 cut(s) 164, 300
ScrFI CCNGG 2 cut(s) 221, 238
SduI GDGCHC 1 cut(s) 232
SetI ASST 5 cut(s) 11, 68, 75, 171, 211
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 1 cut(s) 258
SsiI CCGC 1 cut(s) 327
StyD4I CCNGG 2 cut(s) 219, 236
StyI CCWWGG 1 cut(s) 334
TaaI ACNGT 2 cut(s) 98, 282
TasI AATT 1 cut(s) 258
TfiI GAWTC 2 cut(s) 42, 83
TseI GCWGC 3 cut(s) 139, 206, 252
TspDTI ATGAA 4 cut(s) 197, 262, 284, 290
VneI GTGCAC 1 cut(s) 228
XmnI GAANNNNTTC 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.