Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003173

Physical Location & Seq

Genomic Coordinates Forward (+)

28669896 .. 28671903

Gene Structure 2008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG179600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGGTTTCCAGCTGGTTGAAAATGATAGGGTGAGGAATGGGAACAGAGAAGCACTTACATCTTTGAGGAAGATAGCTCGAACAACAAAAACTAGTGTTCCATCTCCTTTTGAGTCGATGATGAAGGAGATTGGGGGAGCTCAATCAAGACCCCTGGTGAAGGAGGTATGCCCCACCTGTGGCAACCATGACTCAAATGAGCGCACATGGATGATGTTCCCTGGAACTGATGTCTTTGCTAGGATTCCATTTCATGCTGCCCATACCATCTTGGAGAAAGATCAAGAACAACTCGACTTTGATTCCAGAAGGCTACAGAGCACTATGAAGGAGAAATCTCTTGTGCTTTCAGAAACAGGTGCCCTTGCTGACAAGATCTGTCCTGGTGTGCTAAAATCCTTGGTAACCCTGACAGACAAACCTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

15.89

Weight (kDa)

8.86

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15351 AT3G15351 AT3G15351 AT3G15351 AT3G15351 AT3G15351 AT3G15351
fragaria_vesca	FvH4_7g10630 FvH4_7g10630
malus_domestica	MD01G1029500.v1.1 MD07G1111400.v1.1 MD10G1232800.v1.1
prunus_persica	Prupe.2G134800_v2.0.a1 Prupe.2G134800_v2.0.a1 Prupe.2G134800_v2.0.a1
pyrus_communis	pycom01g05780 pycom07g09620
rosa_chinensis	RchiOBHm_Chr1g0348571
rosa_laevigata	RLG00000019092 RLG00000028638
rosa_multiflora	Rmu_sc0008668.1_g000003
rosa_roxburghii	Rroxscaffold_4G00306920 Rroxscaffold_4G00306940
rosa_rugosa	Rorug01G0195200 Rorug01G0195300 Rorug01G0195400 Rorug02G0287600 Rorug02G0287700 Rorug02G0287800 Rorug02G0287900
rosa_samantha	Rh1AG213200 Rh1BG179600 Rh1CG197500 Rh1DG209700 Rh2AG339300
rosa_wichuraiana	Rw1G018030 Rw1G018050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	359
AfiI	CCNNNNNNNGG	2 cut(s)	160, 179
AgsI	TTSAA	1 cut(s)	20
AhlI	ACTAGT	1 cut(s)	92
AjnI	CCWGG	3 cut(s)	153, 220, 382
AluBI	AGCT	3 cut(s)	13, 77, 140
AluI	AGCT	3 cut(s)	13, 77, 140
Alw21I	GWGCWC	2 cut(s)	142, 323
ApeKI	GCWGC	1 cut(s)	257
AspLEI	GCGC	1 cut(s)	204
AsuHPI	GGTGA	2 cut(s)	43, 169
BaeGI	GKGCMC	1 cut(s)	364
BanI	GGYRCC	1 cut(s)	359
BanII	GRGCYC	1 cut(s)	142
Bbv12I	GWGCWC	2 cut(s)	142, 323
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	2 cut(s)	109, 275
BciT130I	CCWGG	3 cut(s)	155, 222, 384
BcuI	ACTAGT	1 cut(s)	92
BfaI	CTAG	2 cut(s)	93, 240
BfmI	CTRYAG	1 cut(s)	314
BglII	AGATCT	1 cut(s)	375
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
Bme1390I	CCNGG	3 cut(s)	155, 222, 384
BmiI	GGNNCC	1 cut(s)	361
BmrFI	CCNGG	3 cut(s)	155, 222, 384
BsaJI	CCNNGG	3 cut(s)	153, 220, 399
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 179
BseBI	CCWGG	3 cut(s)	155, 222, 384
BseDI	CCNNGG	3 cut(s)	153, 220, 399
BseGI	GGATG	1 cut(s)	216
BseLI	CCNNNNNNNGG	2 cut(s)	160, 179
BseSI	GKGCMC	1 cut(s)	364
BseXI	GCAGC	1 cut(s)	244
BshNI	GGYRCC	1 cut(s)	359
BsiHKAI	GWGCWC	2 cut(s)	142, 323
BslI	CCNNNNNNNGG	2 cut(s)	160, 179
Bsp1286I	GDGCHC	3 cut(s)	142, 323, 364
Bsp143I	GATC	2 cut(s)	280, 375
BspLI	GGNNCC	1 cut(s)	361
BspT107I	GGYRCC	1 cut(s)	359
BssECI	CCNNGG	3 cut(s)	153, 220, 399
BssMI	GATC	2 cut(s)	280, 375
BssT1I	CCWWGG	1 cut(s)	399
Bst2UI	CCWGG	3 cut(s)	155, 222, 384
BstDEI	CTNAG	1 cut(s)	423
BstEII	GGTNACC	1 cut(s)	403
BstENI	CCTNNNNNAGG	1 cut(s)	158
BstF5I	GGATG	1 cut(s)	216
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	2 cut(s)	283, 378
BstMBI	GATC	2 cut(s)	280, 375
BstNI	CCWGG	3 cut(s)	155, 222, 384
BstPI	GGTNACC	1 cut(s)	403
BstSCI	CCNGG	3 cut(s)	153, 220, 382
BstSFI	CTRYAG	1 cut(s)	314
BstSLI	GKGCMC	1 cut(s)	364
BstV1I	GCAGC	1 cut(s)	244
BstX2I	RGATCY	1 cut(s)	375
BstYI	RGATCY	1 cut(s)	375
BtsCI	GGATG	1 cut(s)	216
CfoI	GCGC	1 cut(s)	204
CviAII	CATG	3 cut(s)	188, 207, 254
CviJI	RGCY	4 cut(s)	13, 77, 140, 313
CviKI_1	RGCY	4 cut(s)	13, 77, 140, 313
DdeI	CTNAG	1 cut(s)	423
DpnI	GATC	2 cut(s)	282, 377
DpnII	GATC	2 cut(s)	280, 375
Ecl136II	GAGCTC	1 cut(s)	140
Eco130I	CCWWGG	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	142
Eco53kI	GAGCTC	1 cut(s)	140
Eco91I	GGTNACC	1 cut(s)	403
EcoICRI	GAGCTC	1 cut(s)	140
EcoNI	CCTNNNNNAGG	1 cut(s)	158
EcoO65I	GGTNACC	1 cut(s)	403
EcoRII	CCWGG	3 cut(s)	153, 220, 382
EcoT14I	CCWWGG	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	142
ErhI	CCWWGG	1 cut(s)	399
FaeI	CATG	3 cut(s)	191, 210, 257
FaiI	YATR	6 cut(s)	169, 189, 208, 255, 264, 326
FatI	CATG	3 cut(s)	187, 206, 253
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	1 cut(s)	223
FriOI	GRGCYC	1 cut(s)	142
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	2 cut(s)	93, 240
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	1 cut(s)	258
HhaI	GCGC	1 cut(s)	204
Hin1II	CATG	3 cut(s)	191, 210, 257
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HinfI	GANTC	4 cut(s)	113, 191, 244, 302
HphI	GGTGA	2 cut(s)	43, 169
Hpy188I	TCNGA	1 cut(s)	352
Hpy188III	TCNNGA	3 cut(s)	147, 284, 306
HpyAV	CCTTC	4 cut(s)	118, 154, 303, 322
HpyF3I	CTNAG	1 cut(s)	423
Hsp92II	CATG	3 cut(s)	191, 210, 257
HspAI	GCGC	1 cut(s)	202
Kzo9I	GATC	2 cut(s)	280, 375
LmnI	GCTCC	1 cut(s)	137
Lsp1109I	GCAGC	1 cut(s)	244
MaeI	CTAG	2 cut(s)	93, 240
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	2 cut(s)	282, 377
MboI	GATC	2 cut(s)	280, 375
MboII	GAAGA	1 cut(s)	82
MflI	RGATCY	1 cut(s)	375
MhlI	GDGCHC	3 cut(s)	142, 323, 364
MlyI	GAGTC	2 cut(s)	122, 185
MnlI	CCTC	3 cut(s)	27, 60, 157
MslI	CAYNNNNRTG	1 cut(s)	209
MspA1I	CMGCKG	1 cut(s)	13
MspR9I	CCNGG	3 cut(s)	155, 222, 384
MvaI	CCWGG	3 cut(s)	155, 222, 384
NdeII	GATC	2 cut(s)	280, 375
NlaIII	CATG	3 cut(s)	191, 210, 257
NlaIV	GGNNCC	1 cut(s)	361
PfeI	GAWTC	2 cut(s)	244, 302
PkrI	GCNGC	1 cut(s)	259
PleI	GAGTC	2 cut(s)	121, 185
PpsI	GAGTC	2 cut(s)	121, 185
Psp124BI	GAGCTC	1 cut(s)	142
Psp6I	CCWGG	3 cut(s)	153, 220, 382
PspEI	GGTNACC	1 cut(s)	403
PspGI	CCWGG	3 cut(s)	153, 220, 382
PspN4I	GGNNCC	1 cut(s)	361
PsuI	RGATCY	1 cut(s)	375
PvuII	CAGCTG	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	209
SacI	GAGCTC	1 cut(s)	142
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	2 cut(s)	280, 375
SchI	GAGTC	2 cut(s)	122, 185
ScrFI	CCNGG	3 cut(s)	155, 222, 384
SduI	GDGCHC	3 cut(s)	142, 323, 364
SetI	ASST	7 cut(s)	15, 79, 142, 168, 179, 361, 424
SfcI	CTRYAG	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	209
SpeI	ACTAGT	1 cut(s)	92
SspMI	CTAG	2 cut(s)	93, 240
SstI	GAGCTC	1 cut(s)	142
StyD4I	CCNGG	3 cut(s)	153, 220, 382
StyI	CCWWGG	1 cut(s)	399
TaqI	TCGA	3 cut(s)	79, 116, 294
TfiI	GAWTC	2 cut(s)	244, 302
TseI	GCWGC	1 cut(s)	257
TspDTI	ATGAA	3 cut(s)	137, 242, 341
XagI	CCTNNNNNAGG	1 cut(s)	158
XspI	CTAG	2 cut(s)	93, 240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.