Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003173

Physical Location & Seq

Genomic Coordinates Forward (+)

46210458 .. 46213279

Gene Structure 2822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019092

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCCGATAGCATGAAGCAATTCCAGAAAATCTTAATTGAGCATGAGACTCAAGCTGAACACCTCTTTCTAGCTAAACACCAGCTGGTTGAAAATGATAGGGTGAGGAATGGGAACAGAGAAGCACTTACATCTTTGAGGAAGATAGCTCGAACAACAAAAACTAGTGTTCCATCTCCTTTTGAGTCGATGATGAAGGAGATTGGAGGAGCTCAATCAAGACCTCTGGTGAAGGAGGTATGCCCCACTTGTGGCAACCATGACTCAAATGAGCGCACATGGATGATGTTCCCTGGAACTGATATCTTTGCAAGGATTCCATTTCATGCTGCCCATACCATCTTGGAGAAAGATCAAGAACAACTCGACTTTGATTCCAGAAGGCTACAGAGCACCATGAAGGAGAAATCTCTTGTGCTTTCAGAAACAGGAGCCCTTGCTGACAAGATCTGTCCTGGTGTGCTGAAATCCTTGGTGAACCTGACAGACAAACCTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.75

Weight (kDa)

7.78

Isoelectric Point (pI)

43.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15351 AT3G15351 AT3G15351 AT3G15351 AT3G15351 AT3G15351 AT3G15351
fragaria_vesca	FvH4_7g10630 FvH4_7g10630
malus_domestica	MD01G1029500.v1.1 MD07G1111400.v1.1 MD10G1232800.v1.1
prunus_persica	Prupe.2G134800_v2.0.a1 Prupe.2G134800_v2.0.a1 Prupe.2G134800_v2.0.a1
pyrus_communis	pycom01g05780 pycom07g09620
rosa_chinensis	RchiOBHm_Chr1g0348571
rosa_laevigata	RLG00000019092 RLG00000028638
rosa_multiflora	Rmu_sc0008668.1_g000003
rosa_roxburghii	Rroxscaffold_4G00306920 Rroxscaffold_4G00306940
rosa_rugosa	Rorug01G0195200 Rorug01G0195300 Rorug01G0195400 Rorug02G0287600 Rorug02G0287700 Rorug02G0287800 Rorug02G0287900
rosa_samantha	Rh1AG213200 Rh1BG179600 Rh1CG197500 Rh1DG209700 Rh2AG339300
rosa_wichuraiana	Rw1G018030 Rw1G018050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	3
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	1 cut(s)	92
AhlI	ACTAGT	1 cut(s)	164
AjnI	CCWGG	2 cut(s)	292, 454
AluBI	AGCT	6 cut(s)	56, 74, 85, 149, 212, 498
AluI	AGCT	6 cut(s)	56, 74, 85, 149, 212, 498
Alw21I	GWGCWC	2 cut(s)	214, 395
Alw26I	GTCTC	1 cut(s)	41
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	329
Asp700I	GAANNNNTTC	1 cut(s)	20
AspLEI	GCGC	1 cut(s)	276
AsuHPI	GGTGA	3 cut(s)	115, 241, 487
BanII	GRGCYC	2 cut(s)	214, 436
Bbv12I	GWGCWC	2 cut(s)	214, 395
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	2 cut(s)	181, 347
BciT130I	CCWGG	2 cut(s)	294, 456
BcoDI	GTCTC	1 cut(s)	41
BcuI	ACTAGT	1 cut(s)	164
BfaI	CTAG	3 cut(s)	71, 165, 495
BfmI	CTRYAG	1 cut(s)	386
BglII	AGATCT	1 cut(s)	447
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
Bme1390I	CCNGG	2 cut(s)	294, 456
BmiI	GGNNCC	1 cut(s)	433
BmrFI	CCNGG	2 cut(s)	294, 456
BpuEI	CTTGAG	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	292, 471
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
BseBI	CCWGG	2 cut(s)	294, 456
BseDI	CCNNGG	2 cut(s)	292, 471
BseGI	GGATG	1 cut(s)	288
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseRI	GAGGAG	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	316
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	2 cut(s)	214, 395
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	41
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	3 cut(s)	214, 395, 436
Bsp143I	GATC	2 cut(s)	352, 447
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	433
BssECI	CCNNGG	2 cut(s)	292, 471
BssMI	GATC	2 cut(s)	352, 447
BssT1I	CCWWGG	1 cut(s)	471
Bst2UI	CCWGG	2 cut(s)	294, 456
BstF5I	GGATG	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	276
BstKTI	GATC	2 cut(s)	355, 450
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	2 cut(s)	352, 447
BstNI	CCWGG	2 cut(s)	294, 456
BstSCI	CCNGG	2 cut(s)	292, 454
BstSFI	CTRYAG	1 cut(s)	386
BstV1I	GCAGC	1 cut(s)	316
BstX2I	RGATCY	1 cut(s)	447
BstYI	RGATCY	1 cut(s)	447
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	288
CfoI	GCGC	1 cut(s)	276
CviAII	CATG	6 cut(s)	13, 44, 260, 279, 326, 397
CviJI	RGCY	9 cut(s)	5, 56, 74, 85, 149, 212, 385, 434, 498
CviKI_1	RGCY	9 cut(s)	5, 56, 74, 85, 149, 212, 385, 434, 498
DpnI	GATC	2 cut(s)	354, 449
DpnII	GATC	2 cut(s)	352, 447
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	471
Eco24I	GRGCYC	2 cut(s)	214, 436
Eco32I	GATATC	1 cut(s)	304
Eco53kI	GAGCTC	1 cut(s)	212
EcoICRI	GAGCTC	1 cut(s)	212
EcoRII	CCWGG	2 cut(s)	292, 454
EcoRV	GATATC	1 cut(s)	304
EcoT14I	CCWWGG	1 cut(s)	471
EcoT38I	GRGCYC	2 cut(s)	214, 436
ErhI	CCWWGG	1 cut(s)	471
FaeI	CATG	6 cut(s)	16, 47, 263, 282, 329, 400
FaiI	YATR	8 cut(s)	14, 45, 241, 261, 280, 327, 336, 398
FatI	CATG	6 cut(s)	12, 43, 259, 278, 325, 396
Fnu4HI	GCNGC	1 cut(s)	330
FokI	GGATG	1 cut(s)	295
FriOI	GRGCYC	2 cut(s)	214, 436
Fsp4HI	GCNGC	1 cut(s)	330
FspBI	CTAG	3 cut(s)	71, 165, 495
GlaI	GCGC	1 cut(s)	275
GluI	GCNGC	1 cut(s)	330
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	276
Hin1II	CATG	6 cut(s)	16, 47, 263, 282, 329, 400
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HinfI	GANTC	5 cut(s)	49, 185, 263, 316, 374
HphI	GGTGA	3 cut(s)	115, 241, 487
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188I	TCNGA	1 cut(s)	424
Hpy188III	TCNNGA	4 cut(s)	25, 219, 356, 378
Hpy8I	GTNNAC	1 cut(s)	478
HpyAV	CCTTC	4 cut(s)	190, 226, 375, 394
HpyCH4V	TGCA	1 cut(s)	311
Hsp92II	CATG	6 cut(s)	16, 47, 263, 282, 329, 400
HspAI	GCGC	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	352, 447
LmnI	GCTCC	2 cut(s)	209, 431
Lsp1109I	GCAGC	1 cut(s)	316
MaeI	CTAG	3 cut(s)	71, 165, 495
MalI	GATC	2 cut(s)	354, 449
MboI	GATC	2 cut(s)	352, 447
MboII	GAAGA	1 cut(s)	154
MflI	RGATCY	1 cut(s)	447
MhlI	GDGCHC	3 cut(s)	214, 395, 436
MluCI	AATT	2 cut(s)	20, 36
MlyI	GAGTC	3 cut(s)	43, 194, 257
MnlI	CCTC	6 cut(s)	74, 99, 132, 200, 229, 234
MroXI	GAANNNNTTC	1 cut(s)	20
MseI	TTAA	1 cut(s)	35
MslI	CAYNNNNRTG	1 cut(s)	281
MspA1I	CMGCKG	1 cut(s)	85
MspR9I	CCNGG	2 cut(s)	294, 456
MvaI	CCWGG	2 cut(s)	294, 456
NdeII	GATC	2 cut(s)	352, 447
NlaIII	CATG	6 cut(s)	16, 47, 263, 282, 329, 400
NlaIV	GGNNCC	1 cut(s)	433
PdmI	GAANNNNTTC	1 cut(s)	20
PfeI	GAWTC	2 cut(s)	316, 374
PkrI	GCNGC	1 cut(s)	331
PleI	GAGTC	3 cut(s)	43, 193, 257
PpsI	GAGTC	3 cut(s)	43, 193, 257
Psp124BI	GAGCTC	1 cut(s)	214
Psp6I	CCWGG	2 cut(s)	292, 454
PspGI	CCWGG	2 cut(s)	292, 454
PspN4I	GGNNCC	1 cut(s)	433
PsuI	RGATCY	1 cut(s)	447
PvuII	CAGCTG	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	281
SacI	GAGCTC	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	2 cut(s)	352, 447
SchI	GAGTC	3 cut(s)	43, 194, 257
ScrFI	CCNGG	2 cut(s)	294, 456
SduI	GDGCHC	3 cut(s)	214, 395, 436
SfcI	CTRYAG	1 cut(s)	386
SmiMI	CAYNNNNRTG	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	51
SmoI	CTYRAG	1 cut(s)	51
SpeI	ACTAGT	1 cut(s)	164
Sse9I	AATT	2 cut(s)	20, 36
SspMI	CTAG	3 cut(s)	71, 165, 495
SstI	GAGCTC	1 cut(s)	214
StyD4I	CCNGG	2 cut(s)	292, 454
StyI	CCWWGG	1 cut(s)	471
TaqI	TCGA	3 cut(s)	151, 188, 366
TasI	AATT	2 cut(s)	20, 36
TfiI	GAWTC	2 cut(s)	316, 374
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TseI	GCWGC	1 cut(s)	329
TspDTI	ATGAA	4 cut(s)	29, 209, 314, 413
XmnI	GAANNNNTTC	1 cut(s)	20
XspI	CTAG	3 cut(s)	71, 165, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.