Rorug02G0287700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003173
Physical Location & Seq
Reverse (-)
31477534 .. 31485230
7697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0287700.1

Sequence Viewer

Length: 663 bp
ATGAGAATGATGCTAAGGCCGGAGAATGATGTGGATCATAACTTTTACAAGGGAAAAGTTCTGCTCATTGTCAAAGTTGCTTCCAAATGTGGACTAACAAACTCAAACTACACGGAGCTGAATCAACTATATGAAAAGTATAAAGATCAAGTTGACAGAGATGAGAAAGTTTCTTATCGCTATTACCCTACAACTGCCACCCTTAGCCTTAAGCATCGTTTAAATACAGCTGTTGGGAGTCTCATGAAGGCTTCGATGGGGTCTCAGCACAGTCAAGCATTCTGTTCATTGCTCCTAGCTGGGTTTGATGCTTCTCGCGTCTTTAACTCTTTCCCTTCTCAAATCTCAAAGCTTTCTTCCAGTTACGCCAGCCCTACAACTTCTTTGCCTTCCTCTTCAGTAAAGATTTCATTTATAGGGTTTAGTACTTTAGTCACCTTTTTAATTTGGGGTTTAAGGTTATATGTTGATCGAAAAGATGAGAGCCCTGATAGTTACTTTTCTGGTAACAGTAGTGATTTCAATACTGGTAGTAGTCCTAGTGCTGGCACTAGCAACTCCGTTGATTCTCAATCGCTTGGTGATTATGGAGAGCAAAAGCCATCTTTATCAGAAACCTTTGGTCTTGTGTTATGTTCCCTATGTGATGTACAAGGTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

220

Amino Acids

24.19

Weight (kDa)

7.59

Isoelectric Point (pI)

32.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GSHPx PF00255 9 - 50 1.2e-10 Glutathione peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 318
AclWI GGATC 1 cut(s) 42
AcuI CTGAAG 1 cut(s) 381
AfaI GTAC 2 cut(s) 427, 651
AfiI CCNNNNNNNGG 1 cut(s) 545
AflII CTTAAG 1 cut(s) 209
AgsI TTSAA 1 cut(s) 523
AluBI AGCT 4 cut(s) 118, 230, 299, 352
AluI AGCT 4 cut(s) 118, 230, 299, 352
Alw26I GTCTC 2 cut(s) 245, 267
AlwI GGATC 1 cut(s) 42
AoxI GGCC 1 cut(s) 17
AsuHPI GGTGA 2 cut(s) 427, 593
BanII GRGCYC 1 cut(s) 488
BccI CCATC 2 cut(s) 250, 610
BcoDI GTCTC 2 cut(s) 245, 267
BfaI CTAG 4 cut(s) 296, 540, 552, 661
BfrI CTTAAG 1 cut(s) 209
BmcAI AGTACT 1 cut(s) 427
BmsI GCATC 2 cut(s) 223, 298
Bpu10I CCTNAGC 2 cut(s) 14, 203
BsaBI GATNNNNATC 1 cut(s) 33
BsaI GGTCTC 1 cut(s) 267
Bsc4I CCNNNNNNNGG 1 cut(s) 545
Bse1I ACTGG 2 cut(s) 360, 532
Bse3DI GCAATG 1 cut(s) 287
Bse8I GATNNNNATC 1 cut(s) 33
BseJI GATNNNNATC 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 545
BseMI GCAATG 1 cut(s) 287
BseMII CTCAG 1 cut(s) 278
BseNI ACTGG 2 cut(s) 360, 532
BseYI CCCAGC 1 cut(s) 299
Bsh1236I CGCG 1 cut(s) 318
BshFI GGCC 1 cut(s) 19
BsiSI CCGG 1 cut(s) 20
BslI CCNNNNNNNGG 1 cut(s) 545
BsmAI GTCTC 2 cut(s) 245, 267
BsmI GAATGC 1 cut(s) 278
BsnI GGCC 1 cut(s) 19
Bso31I GGTCTC 1 cut(s) 267
Bsp1286I GDGCHC 1 cut(s) 488
Bsp1407I TGTACA 1 cut(s) 649
Bsp143I GATC 3 cut(s) 34, 145, 469
BspANI GGCC 1 cut(s) 19
BspCNI CTCAG 1 cut(s) 277
BspFNI CGCG 1 cut(s) 318
BspHI TCATGA 1 cut(s) 243
BspPI GGATC 1 cut(s) 42
BspTI CTTAAG 1 cut(s) 209
BspTNI GGTCTC 1 cut(s) 267
BsrDI GCAATG 1 cut(s) 287
BsrGI TGTACA 1 cut(s) 649
BsrI ACTGG 2 cut(s) 360, 532
BssMI GATC 3 cut(s) 34, 145, 469
Bst4CI ACNGT 2 cut(s) 272, 512
Bst6I CTCTTC 1 cut(s) 400
BstAFI CTTAAG 1 cut(s) 209
BstAUI TGTACA 1 cut(s) 649
BstC8I GCNNGC 2 cut(s) 370, 547
BstDEI CTNAG 3 cut(s) 14, 203, 264
BstFNI CGCG 1 cut(s) 318
BstKTI GATC 3 cut(s) 37, 148, 472
BstMAI GTCTC 2 cut(s) 245, 267
BstMBI GATC 3 cut(s) 34, 145, 469
BstUI CGCG 1 cut(s) 318
BsuRI GGCC 1 cut(s) 19
Cac8I GCNNGC 2 cut(s) 370, 547
CciI TCATGA 1 cut(s) 243
CseI GACGC 1 cut(s) 307
Csp6I GTAC 2 cut(s) 426, 650
CviAII CATG 1 cut(s) 244
CviQI GTAC 2 cut(s) 426, 650
DdeI CTNAG 3 cut(s) 14, 203, 264
DpnI GATC 3 cut(s) 36, 147, 471
DpnII GATC 3 cut(s) 34, 145, 469
DraI TTTAAA 1 cut(s) 222
Eam1104I CTCTTC 1 cut(s) 400
EarI CTCTTC 1 cut(s) 400
Eco24I GRGCYC 1 cut(s) 488
Eco31I GGTCTC 1 cut(s) 267
Eco57I CTGAAG 1 cut(s) 381
EcoT38I GRGCYC 1 cut(s) 488
FaeI CATG 1 cut(s) 247
FatI CATG 1 cut(s) 243
FriOI GRGCYC 1 cut(s) 488
FspBI CTAG 4 cut(s) 296, 540, 552, 661
GsaI CCCAGC 1 cut(s) 303
HaeIII GGCC 1 cut(s) 19
HapII CCGG 1 cut(s) 20
HgaI GACGC 1 cut(s) 307
Hin1II CATG 1 cut(s) 247
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 3 cut(s) 121, 238, 566
HpaII CCGG 1 cut(s) 20
HphI GGTGA 2 cut(s) 427, 593
Hpy166II GTNNAC 2 cut(s) 92, 154
Hpy188I TCNGA 1 cut(s) 613
Hpy188III TCNNGA 1 cut(s) 244
Hpy8I GTNNAC 2 cut(s) 92, 154
HpyAV CCTTC 3 cut(s) 241, 345, 399
HpyCH4III ACNGT 2 cut(s) 272, 512
HpyF3I CTNAG 3 cut(s) 14, 203, 264
Hsp92II CATG 1 cut(s) 247
Kzo9I GATC 3 cut(s) 34, 145, 469
LmnI GCTCC 2 cut(s) 115, 297
LpnPI CCDG 8 cut(s) 33, 285, 373, 382, 489, 501, 513, 531
LweI GCATC 2 cut(s) 223, 298
MaeI CTAG 4 cut(s) 296, 540, 552, 661
MaeIII GTNAC 4 cut(s) 362, 433, 494, 506
MalI GATC 3 cut(s) 36, 147, 471
MboI GATC 3 cut(s) 34, 145, 469
MboII GAAGA 2 cut(s) 348, 387
MhlI GDGCHC 1 cut(s) 488
MluCI AATT 1 cut(s) 444
MlyI GAGTC 1 cut(s) 247
MnlI CCTC 1 cut(s) 403
MseI TTAA 5 cut(s) 210, 221, 324, 443, 455
MspA1I CMGCKG 1 cut(s) 230
MspCI CTTAAG 1 cut(s) 209
MspI CCGG 1 cut(s) 20
Mva1269I GAATGC 1 cut(s) 278
MvnI CGCG 1 cut(s) 318
NdeII GATC 3 cut(s) 34, 145, 469
NlaIII CATG 1 cut(s) 247
NmuCI GTSAC 1 cut(s) 433
PagI TCATGA 1 cut(s) 243
PctI GAATGC 1 cut(s) 278
PfeI GAWTC 2 cut(s) 121, 566
PleI GAGTC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 299
PvuII CAGCTG 1 cut(s) 230
RsaI GTAC 2 cut(s) 427, 651
RsaNI GTAC 2 cut(s) 426, 650
SaqAI TTAA 5 cut(s) 210, 221, 324, 443, 455
Sau3AI GATC 3 cut(s) 34, 145, 469
ScaI AGTACT 1 cut(s) 427
SchI GAGTC 1 cut(s) 247
SduI GDGCHC 1 cut(s) 488
SetI ASST 8 cut(s) 120, 232, 301, 354, 440, 461, 620, 658
SfaNI GCATC 2 cut(s) 223, 298
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 1 cut(s) 444
SspMI CTAG 4 cut(s) 296, 540, 552, 661
TaaI ACNGT 2 cut(s) 272, 512
TaqI TCGA 2 cut(s) 254, 472
TasI AATT 1 cut(s) 444
TatI WGTACW 2 cut(s) 425, 649
TfiI GAWTC 2 cut(s) 121, 566
Tru1I TTAA 5 cut(s) 210, 221, 324, 443, 455
Tru9I TTAA 5 cut(s) 210, 221, 324, 443, 455
TseFI GTSAC 1 cut(s) 433
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 4 cut(s) 147, 260, 276, 399
TspGWI ACGGA 2 cut(s) 128, 550
Vha464I CTTAAG 1 cut(s) 209
XspI CTAG 4 cut(s) 296, 540, 552, 661
ZrmI AGTACT 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.