Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003173

Physical Location & Seq

Genomic Coordinates Forward (+)

9962534 .. 9967271

Gene Structure 4738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g10630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGACGATAGCATGAAGCAATTCCAGAAAATCTTAATTGAGCACGAGACTCAAGCTGAGCAACTCTTTCTAGCTAAACACCAGCTGGTTATGATGATTATCTTGATATTGCAGCTGGTTGAAAATGATAGGGTGAGGAACGGGAACAGAGAAGCGCTTACATCTTTGAGGAAGATAGCTCGAACAACAAAAACTAGTGTTCCATCTCCTTTTGAGTCGATGATGAAGGAGATTGGGGGAGCTCAATCAAGACCCCTGGTGAAGGAGGTATGCCCCACCTGTGGCAACCATGACTCAAATGAGCGCACATGGATGATGTTCCCTGGAACTGATGTCTTTGCTAGGATTCCATTTCATGCTGCCCATACCATCTTGGAGAAAGATCAAGAACAGCTCGACTTTGATTCCAGAAGGCTACAAAGCACTATGAAGGAGAAATCTCTTGTGCTTTCAGAAACAGGTGCCCTTGCTGACAAGATCTGTCCTGGTGTGCTGAAATCCTTGGTAACCCTGACAGACAAACCTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

177

Amino Acids

19.97

Weight (kDa)

7.75

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15351 AT3G15351 AT3G15351 AT3G15351 AT3G15351 AT3G15351 AT3G15351
fragaria_vesca	FvH4_7g10630 FvH4_7g10630
malus_domestica	MD01G1029500.v1.1 MD07G1111400.v1.1 MD10G1232800.v1.1
prunus_persica	Prupe.2G134800_v2.0.a1 Prupe.2G134800_v2.0.a1 Prupe.2G134800_v2.0.a1
pyrus_communis	pycom01g05780 pycom07g09620
rosa_chinensis	RchiOBHm_Chr1g0348571
rosa_laevigata	RLG00000019092 RLG00000028638
rosa_multiflora	Rmu_sc0008668.1_g000003
rosa_roxburghii	Rroxscaffold_4G00306920 Rroxscaffold_4G00306940
rosa_rugosa	Rorug01G0195200 Rorug01G0195300 Rorug01G0195400 Rorug02G0287600 Rorug02G0287700 Rorug02G0287800 Rorug02G0287900
rosa_samantha	Rh1AG213200 Rh1BG179600 Rh1CG197500 Rh1DG209700 Rh2AG339300
rosa_wichuraiana	Rw1G018030 Rw1G018050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	461
AfeI	AGCGCT	1 cut(s)	156
AfiI	CCNNNNNNNGG	2 cut(s)	262, 281
AgsI	TTSAA	1 cut(s)	122
AhlI	ACTAGT	1 cut(s)	194
AjnI	CCWGG	3 cut(s)	255, 322, 484
AluBI	AGCT	7 cut(s)	56, 74, 85, 115, 179, 242, 394
AluI	AGCT	7 cut(s)	56, 74, 85, 115, 179, 242, 394
Alw21I	GWGCWC	2 cut(s)	45, 244
Alw26I	GTCTC	1 cut(s)	41
Aor51HI	AGCGCT	1 cut(s)	156
ApeKI	GCWGC	2 cut(s)	112, 359
Asp700I	GAANNNNTTC	1 cut(s)	20
AspLEI	GCGC	2 cut(s)	157, 306
AsuHPI	GGTGA	2 cut(s)	145, 271
BaeGI	GKGCMC	1 cut(s)	466
BanI	GGYRCC	1 cut(s)	461
BanII	GRGCYC	1 cut(s)	244
BauI	CACGAG	1 cut(s)	44
Bbv12I	GWGCWC	2 cut(s)	45, 244
BbvI	GCAGC	2 cut(s)	124, 346
BccI	CCATC	2 cut(s)	211, 377
BciT130I	CCWGG	3 cut(s)	257, 324, 486
BcoDI	GTCTC	1 cut(s)	41
BcuI	ACTAGT	1 cut(s)	194
BfaI	CTAG	3 cut(s)	71, 195, 342
BfoI	RGCGCY	1 cut(s)	158
BglII	AGATCT	1 cut(s)	477
BisI	GCNGC	2 cut(s)	113, 360
BlpI	GCTNAGC	1 cut(s)	57
BlsI	GCNGC	2 cut(s)	114, 361
Bme1390I	CCNGG	3 cut(s)	257, 324, 486
BmiI	GGNNCC	1 cut(s)	463
BmrFI	CCNGG	3 cut(s)	257, 324, 486
Bpu1102I	GCTNAGC	1 cut(s)	57
BpuEI	CTTGAG	1 cut(s)	36
BsaBI	GATNNNNATC	1 cut(s)	98
BsaJI	CCNNGG	3 cut(s)	255, 322, 501
Bsc4I	CCNNNNNNNGG	2 cut(s)	262, 281
Bse8I	GATNNNNATC	1 cut(s)	98
BseBI	CCWGG	3 cut(s)	257, 324, 486
BseDI	CCNNGG	3 cut(s)	255, 322, 501
BseGI	GGATG	1 cut(s)	318
BseJI	GATNNNNATC	1 cut(s)	98
BseLI	CCNNNNNNNGG	2 cut(s)	262, 281
BseMII	CTCAG	1 cut(s)	48
BseSI	GKGCMC	1 cut(s)	466
BseXI	GCAGC	2 cut(s)	124, 346
BshNI	GGYRCC	1 cut(s)	461
BsiHKAI	GWGCWC	2 cut(s)	45, 244
BslI	CCNNNNNNNGG	2 cut(s)	262, 281
BsmAI	GTCTC	1 cut(s)	41
Bsp1286I	GDGCHC	3 cut(s)	45, 244, 466
Bsp143I	GATC	2 cut(s)	382, 477
Bsp1720I	GCTNAGC	1 cut(s)	57
BspCNI	CTCAG	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	463
BspT107I	GGYRCC	1 cut(s)	461
BssECI	CCNNGG	3 cut(s)	255, 322, 501
BssMI	GATC	2 cut(s)	382, 477
BssSI	CACGAG	1 cut(s)	44
BssT1I	CCWWGG	1 cut(s)	501
Bst2BI	CACGAG	1 cut(s)	44
Bst2UI	CCWGG	3 cut(s)	257, 324, 486
BstDEI	CTNAG	2 cut(s)	57, 525
BstEII	GGTNACC	1 cut(s)	505
BstENI	CCTNNNNNAGG	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	318
BstH2I	RGCGCY	1 cut(s)	158
BstHHI	GCGC	2 cut(s)	157, 306
BstKTI	GATC	2 cut(s)	385, 480
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	2 cut(s)	382, 477
BstNI	CCWGG	3 cut(s)	257, 324, 486
BstPI	GGTNACC	1 cut(s)	505
BstSCI	CCNGG	3 cut(s)	255, 322, 484
BstSLI	GKGCMC	1 cut(s)	466
BstV1I	GCAGC	2 cut(s)	124, 346
BstX2I	RGATCY	1 cut(s)	477
BstYI	RGATCY	1 cut(s)	477
BtsCI	GGATG	1 cut(s)	318
CfoI	GCGC	2 cut(s)	157, 306
CviAII	CATG	4 cut(s)	13, 290, 309, 356
CviJI	RGCY	8 cut(s)	56, 74, 85, 115, 179, 242, 394, 415
CviKI_1	RGCY	8 cut(s)	56, 74, 85, 115, 179, 242, 394, 415
DdeI	CTNAG	2 cut(s)	57, 525
DpnI	GATC	2 cut(s)	384, 479
DpnII	GATC	2 cut(s)	382, 477
Ecl136II	GAGCTC	1 cut(s)	242
Eco130I	CCWWGG	1 cut(s)	501
Eco24I	GRGCYC	1 cut(s)	244
Eco47III	AGCGCT	1 cut(s)	156
Eco53kI	GAGCTC	1 cut(s)	242
Eco91I	GGTNACC	1 cut(s)	505
EcoICRI	GAGCTC	1 cut(s)	242
EcoNI	CCTNNNNNAGG	1 cut(s)	260
EcoO65I	GGTNACC	1 cut(s)	505
EcoRII	CCWGG	3 cut(s)	255, 322, 484
EcoT14I	CCWWGG	1 cut(s)	501
EcoT38I	GRGCYC	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	501
FaeI	CATG	4 cut(s)	16, 293, 312, 359
FaiI	YATR	8 cut(s)	14, 92, 271, 291, 310, 357, 366, 428
FatI	CATG	4 cut(s)	12, 289, 308, 355
Fnu4HI	GCNGC	2 cut(s)	113, 360
FokI	GGATG	1 cut(s)	325
FriOI	GRGCYC	1 cut(s)	244
Fsp4HI	GCNGC	2 cut(s)	113, 360
FspBI	CTAG	3 cut(s)	71, 195, 342
GlaI	GCGC	2 cut(s)	156, 305
GluI	GCNGC	2 cut(s)	113, 360
HaeII	RGCGCY	1 cut(s)	158
HhaI	GCGC	2 cut(s)	157, 306
Hin1II	CATG	4 cut(s)	16, 293, 312, 359
Hin6I	GCGC	2 cut(s)	155, 304
HinP1I	GCGC	2 cut(s)	155, 304
HinfI	GANTC	5 cut(s)	49, 215, 293, 346, 404
HphI	GGTGA	2 cut(s)	145, 271
Hpy188I	TCNGA	1 cut(s)	454
Hpy188III	TCNNGA	5 cut(s)	25, 103, 249, 386, 408
HpyAV	CCTTC	4 cut(s)	220, 256, 405, 424
HpyCH4V	TGCA	1 cut(s)	112
HpyF3I	CTNAG	2 cut(s)	57, 525
Hsp92II	CATG	4 cut(s)	16, 293, 312, 359
HspAI	GCGC	2 cut(s)	155, 304
Kzo9I	GATC	2 cut(s)	382, 477
LmnI	GCTCC	1 cut(s)	239
Lsp1109I	GCAGC	2 cut(s)	124, 346
MaeI	CTAG	3 cut(s)	71, 195, 342
MaeIII	GTNAC	1 cut(s)	505
MalI	GATC	2 cut(s)	384, 479
MboI	GATC	2 cut(s)	382, 477
MboII	GAAGA	1 cut(s)	184
MflI	RGATCY	1 cut(s)	477
MhlI	GDGCHC	3 cut(s)	45, 244, 466
MluCI	AATT	2 cut(s)	20, 36
MlyI	GAGTC	3 cut(s)	43, 224, 287
MnlI	CCTC	3 cut(s)	129, 162, 259
MroXI	GAANNNNTTC	1 cut(s)	20
MseI	TTAA	1 cut(s)	35
MslI	CAYNNNNRTG	1 cut(s)	311
MspA1I	CMGCKG	2 cut(s)	85, 115
MspR9I	CCNGG	3 cut(s)	257, 324, 486
MvaI	CCWGG	3 cut(s)	257, 324, 486
NdeII	GATC	2 cut(s)	382, 477
NlaIII	CATG	4 cut(s)	16, 293, 312, 359
NlaIV	GGNNCC	1 cut(s)	463
PdmI	GAANNNNTTC	1 cut(s)	20
PfeI	GAWTC	2 cut(s)	346, 404
PkrI	GCNGC	2 cut(s)	114, 361
PleI	GAGTC	3 cut(s)	43, 223, 287
PpsI	GAGTC	3 cut(s)	43, 223, 287
Psp124BI	GAGCTC	1 cut(s)	244
Psp6I	CCWGG	3 cut(s)	255, 322, 484
PspEI	GGTNACC	1 cut(s)	505
PspGI	CCWGG	3 cut(s)	255, 322, 484
PspN4I	GGNNCC	1 cut(s)	463
PsuI	RGATCY	1 cut(s)	477
PvuII	CAGCTG	2 cut(s)	85, 115
RseI	CAYNNNNRTG	1 cut(s)	311
SacI	GAGCTC	1 cut(s)	244
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	2 cut(s)	113, 360
Sau3AI	GATC	2 cut(s)	382, 477
SchI	GAGTC	3 cut(s)	43, 224, 287
ScrFI	CCNGG	3 cut(s)	257, 324, 486
SduI	GDGCHC	3 cut(s)	45, 244, 466
SmiMI	CAYNNNNRTG	1 cut(s)	311
SmlI	CTYRAG	1 cut(s)	51
SmoI	CTYRAG	1 cut(s)	51
SpeI	ACTAGT	1 cut(s)	194
Sse9I	AATT	2 cut(s)	20, 36
SspMI	CTAG	3 cut(s)	71, 195, 342
SstI	GAGCTC	1 cut(s)	244
StyD4I	CCNGG	3 cut(s)	255, 322, 484
StyI	CCWWGG	1 cut(s)	501
TaqI	TCGA	3 cut(s)	181, 218, 396
TasI	AATT	2 cut(s)	20, 36
TfiI	GAWTC	2 cut(s)	346, 404
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TseI	GCWGC	2 cut(s)	112, 359
TspDTI	ATGAA	4 cut(s)	29, 239, 344, 443
XagI	CCTNNNNNAGG	1 cut(s)	260
XmnI	GAANNNNTTC	1 cut(s)	20
XspI	CTAG	3 cut(s)	71, 195, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.