Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003173

Physical Location & Seq

Genomic Coordinates Forward (+)

19249882 .. 19253726

Gene Structure 3845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G134800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGATGAGACCATGCAAAGCTTAATTGAGCTTGAGACTGAAGCCGAGCATCTCCTTTTAGCCCGACACCAGCTGGTTGAAAATGACAGGGTGAGGAATGGGAATAGAGAAGCACTTACATCTCTGAGGAAGATAGCTCGGACAACCAAGACTAGTGTTCCATCTCCTTTTGAGTCGATAATGAAGGAGATTGCGGGGCCTGAATCAAGACCTTTGGTGAAGGAGGTATGCCCCACATGCGGTAACCATGACTCAAATGAGCGCACTTGGATGATGTTCCCAGGAACTGATGTCTTTGCAAGGATTCCATTCCATGCTGCCCACACCGTCTTGGAGTCAGAACAAGAACAACTTGACTTCGATTCTAGAAAGCTACAAAGCATTGTGAAGGAAAAGTCCCTTTTGATTTCAGAAAAAGGTGTCCTTGCGGACAAGGTGTCTCCGGGTGTGATGAAGTCTTTGGTAACCCTGACAGACAAACCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

18.24

Weight (kDa)

5.98

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15351 AT3G15351 AT3G15351 AT3G15351 AT3G15351 AT3G15351 AT3G15351
fragaria_vesca	FvH4_7g10630 FvH4_7g10630
malus_domestica	MD01G1029500.v1.1 MD07G1111400.v1.1 MD10G1232800.v1.1
prunus_persica	Prupe.2G134800_v2.0.a1 Prupe.2G134800_v2.0.a1 Prupe.2G134800_v2.0.a1
pyrus_communis	pycom01g05780 pycom07g09620
rosa_chinensis	RchiOBHm_Chr1g0348571
rosa_laevigata	RLG00000019092 RLG00000028638
rosa_multiflora	Rmu_sc0008668.1_g000003
rosa_roxburghii	Rroxscaffold_4G00306920 Rroxscaffold_4G00306940
rosa_rugosa	Rorug01G0195200 Rorug01G0195300 Rorug01G0195400 Rorug02G0287600 Rorug02G0287700 Rorug02G0287800 Rorug02G0287900
rosa_samantha	Rh1AG213200 Rh1BG179600 Rh1CG197500 Rh1DG209700 Rh2AG339300
rosa_wichuraiana	Rw1G018030 Rw1G018050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	194, 240, 428
AcuI	CTGAAG	1 cut(s)	60
AfiI	CCNNNNNNNGG	1 cut(s)	239
AgsI	TTSAA	1 cut(s)	80
AhdI	GACNNNNNGTC	1 cut(s)	436
AhlI	ACTAGT	1 cut(s)	152
AjnI	CCWGG	1 cut(s)	280
AluBI	AGCT	5 cut(s)	21, 31, 73, 137, 373
AluI	AGCT	5 cut(s)	21, 31, 73, 137, 373
Alw26I	GTCTC	3 cut(s)	2, 29, 444
AlwNI	CAGNNNCTG	1 cut(s)	287
AoxI	GGCC	1 cut(s)	197
ApeKI	GCWGC	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	264
AspS9I	GGNCC	1 cut(s)	197
AsuC2I	CCSGG	1 cut(s)	444
AsuHPI	GGTGA	2 cut(s)	103, 229
BbvI	GCAGC	1 cut(s)	304
BccI	CCATC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	282
BcnI	CCSGG	1 cut(s)	444
BcoDI	GTCTC	3 cut(s)	2, 29, 444
BcuI	ACTAGT	1 cut(s)	152
BfaI	CTAG	2 cut(s)	153, 366
BisI	GCNGC	1 cut(s)	318
BlsI	GCNGC	1 cut(s)	319
Bme1390I	CCNGG	2 cut(s)	282, 444
BmeRI	GACNNNNNGTC	1 cut(s)	436
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	2 cut(s)	282, 444
BmsI	GCATC	1 cut(s)	58
BpuEI	CTTGAG	1 cut(s)	53
BpuMI	CCSGG	1 cut(s)	444
BsaI	GGTCTC	1 cut(s)	2
BsaJI	CCNNGG	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	280
BseGI	GGATG	2 cut(s)	10, 276
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMII	CTCAG	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	304
BshFI	GGCC	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	443
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmAI	GTCTC	3 cut(s)	2, 29, 444
BsmFI	GGGAC	1 cut(s)	382
BsnI	GGCC	1 cut(s)	199
Bso31I	GGTCTC	1 cut(s)	2
BspACI	CCGC	3 cut(s)	194, 240, 428
BspANI	GGCC	1 cut(s)	199
BspCNI	CTCAG	1 cut(s)	117
BspLI	GGNNCC	1 cut(s)	198
BspTNI	GGTCTC	1 cut(s)	2
BssECI	CCNNGG	1 cut(s)	280
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	328
BstDEI	CTNAG	1 cut(s)	125
BstEII	GGTNACC	2 cut(s)	242, 463
BstF5I	GGATG	2 cut(s)	10, 276
BstHHI	GCGC	1 cut(s)	264
BstMAI	GTCTC	3 cut(s)	2, 29, 444
BstMWI	GCNNNNNNNGC	1 cut(s)	237
BstNI	CCWGG	1 cut(s)	282
BstNSI	RCATGY	1 cut(s)	240
BstPI	GGTNACC	2 cut(s)	242, 463
BstSCI	CCNGG	2 cut(s)	280, 442
BstV1I	GCAGC	1 cut(s)	304
BsuRI	GGCC	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	10, 276
CaiI	CAGNNNCTG	1 cut(s)	287
CfoI	GCGC	1 cut(s)	264
Cfr13I	GGNCC	1 cut(s)	197
CviAII	CATG	4 cut(s)	13, 237, 248, 314
CviJI	RGCY	8 cut(s)	21, 31, 44, 62, 73, 137, 199, 373
CviKI_1	RGCY	8 cut(s)	21, 31, 44, 62, 73, 137, 199, 373
DdeI	CTNAG	1 cut(s)	125
DriI	GACNNNNNGTC	1 cut(s)	436
Eam1105I	GACNNNNNGTC	1 cut(s)	436
Eco31I	GGTCTC	1 cut(s)	2
Eco57I	CTGAAG	1 cut(s)	60
Eco91I	GGTNACC	2 cut(s)	242, 463
EcoO109I	RGGNCCY	1 cut(s)	197
EcoO65I	GGTNACC	2 cut(s)	242, 463
EcoRII	CCWGG	1 cut(s)	280
FaeI	CATG	4 cut(s)	16, 240, 251, 317
FaiI	YATR	5 cut(s)	14, 229, 238, 249, 315
FalI	AAGNNNNNCTT	4 cut(s)	336, 368, 408, 440
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	4 cut(s)	12, 236, 247, 313
FauI	CCCGC	1 cut(s)	187
Fnu4HI	GCNGC	1 cut(s)	318
FokI	GGATG	2 cut(s)	17, 283
Fsp4HI	GCNGC	1 cut(s)	318
FspBI	CTAG	2 cut(s)	153, 366
GlaI	GCGC	1 cut(s)	263
GluI	GCNGC	1 cut(s)	318
HaeIII	GGCC	1 cut(s)	199
HapII	CCGG	1 cut(s)	443
HhaI	GCGC	1 cut(s)	264
Hin1II	CATG	4 cut(s)	16, 240, 251, 317
Hin6I	GCGC	1 cut(s)	262
HinP1I	GCGC	1 cut(s)	262
HindIII	AAGCTT	1 cut(s)	19
HinfI	GANTC	6 cut(s)	173, 203, 251, 304, 335, 362
HpaII	CCGG	1 cut(s)	443
HphI	GGTGA	2 cut(s)	103, 229
Hpy188I	TCNGA	4 cut(s)	126, 141, 340, 412
Hpy188III	TCNNGA	2 cut(s)	207, 366
HpyAV	CCTTC	3 cut(s)	178, 214, 382
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4V	TGCA	2 cut(s)	16, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	237
HpyF3I	CTNAG	1 cut(s)	125
Hsp92II	CATG	4 cut(s)	16, 240, 251, 317
HspAI	GCGC	1 cut(s)	262
LpnPI	CCDG	8 cut(s)	59, 73, 83, 213, 267, 294, 456, 482
Lsp1109I	GCAGC	1 cut(s)	304
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	2 cut(s)	153, 366
MaeIII	GTNAC	2 cut(s)	242, 463
MboII	GAAGA	1 cut(s)	142
MluCI	AATT	1 cut(s)	24
MlyI	GAGTC	3 cut(s)	182, 245, 344
MnlI	CCTC	3 cut(s)	87, 120, 217
MseI	TTAA	1 cut(s)	23
MslI	CAYNNNNRTG	1 cut(s)	269
MspA1I	CMGCKG	1 cut(s)	73
MspI	CCGG	1 cut(s)	443
MspR9I	CCNGG	2 cut(s)	282, 444
MvaI	CCWGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	1 cut(s)	237
NciI	CCSGG	1 cut(s)	444
NlaIII	CATG	4 cut(s)	16, 240, 251, 317
NlaIV	GGNNCC	1 cut(s)	198
NmeAIII	GCCGAG	1 cut(s)	70
NspI	RCATGY	1 cut(s)	240
PfeI	GAWTC	3 cut(s)	203, 304, 362
PkrI	GCNGC	1 cut(s)	319
PleI	GAGTC	3 cut(s)	181, 245, 343
PpsI	GAGTC	3 cut(s)	181, 245, 343
Psp6I	CCWGG	1 cut(s)	280
PspEI	GGTNACC	2 cut(s)	242, 463
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	197
PstNI	CAGNNNCTG	1 cut(s)	287
PvuII	CAGCTG	1 cut(s)	73
RseI	CAYNNNNRTG	1 cut(s)	269
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	1 cut(s)	318
Sau96I	GGNCC	1 cut(s)	197
SchI	GAGTC	3 cut(s)	182, 245, 344
ScrFI	CCNGG	2 cut(s)	282, 444
SetI	ASST	9 cut(s)	23, 33, 75, 139, 214, 228, 375, 421, 438
SfaNI	GCATC	1 cut(s)	58
SmiMI	CAYNNNNRTG	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
SpeI	ACTAGT	1 cut(s)	152
Sse9I	AATT	1 cut(s)	24
SsiI	CCGC	3 cut(s)	194, 240, 428
SspMI	CTAG	2 cut(s)	153, 366
StyD4I	CCNGG	2 cut(s)	280, 442
TaaI	ACNGT	1 cut(s)	328
TaqI	TCGA	2 cut(s)	176, 360
TasI	AATT	1 cut(s)	24
TfiI	GAWTC	3 cut(s)	203, 304, 362
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TseI	GCWGC	1 cut(s)	317
TspDTI	ATGAA	2 cut(s)	197, 467
XbaI	TCTAGA	1 cut(s)	365
XceI	RCATGY	1 cut(s)	240
XspI	CTAG	2 cut(s)	153, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.