Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003173

Physical Location & Seq

Genomic Coordinates Reverse (-)

27933350 .. 27939608

Gene Structure 6259 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00306940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGACGATAGCATGAAGCAATTCCTGAAAATCTTAATTGAGCATGAGACTCAAGCTGAGCAACTCTTTCTAGCCAAACACCAGGATGGACACTTTGGGATAAGTTTTAATTTTAGGGTGAGGAATGGGAACAGAGAAGCACTCACATCTCTGAGGAAGATAGCTCGAACAACAAAAACTAGTGTTCCATCTCCTTTTGAGTCGATGATGAAGGAGATTGGGGAGCTCAATCAAGACCCCTGGATTCCATTTCATGCTGCTCATACCATCTTGGAGAAAGATCGAGAACAACTTGACTTTGATTCTAGAAGGCTGCAGAGCACTATGAAGGAGAAATCTCTTGTGCTTTCAGAAACAGGTGCTGTTGCTGACAAGATCTGTCCTGGTGTGCTGAAATCCTTGGTAACCCTGATAGACAAACCTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

16.22

Weight (kDa)

7.9

Isoelectric Point (pI)

36.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15351 AT3G15351 AT3G15351 AT3G15351 AT3G15351 AT3G15351 AT3G15351
fragaria_vesca	FvH4_7g10630 FvH4_7g10630
malus_domestica	MD01G1029500.v1.1 MD07G1111400.v1.1 MD10G1232800.v1.1
prunus_persica	Prupe.2G134800_v2.0.a1 Prupe.2G134800_v2.0.a1 Prupe.2G134800_v2.0.a1
pyrus_communis	pycom01g05780 pycom07g09620
rosa_chinensis	RchiOBHm_Chr1g0348571
rosa_laevigata	RLG00000019092 RLG00000028638
rosa_multiflora	Rmu_sc0008668.1_g000003
rosa_roxburghii	Rroxscaffold_4G00306920 Rroxscaffold_4G00306940
rosa_rugosa	Rorug01G0195200 Rorug01G0195300 Rorug01G0195400 Rorug02G0287600 Rorug02G0287700 Rorug02G0287800 Rorug02G0287900
rosa_samantha	Rh1AG213200 Rh1BG179600 Rh1CG197500 Rh1DG209700 Rh2AG339300
rosa_wichuraiana	Rw1G018030 Rw1G018050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AhlI	ACTAGT	1 cut(s)	179
AjnI	CCWGG	3 cut(s)	81, 239, 382
AluBI	AGCT	3 cut(s)	56, 164, 226
AluI	AGCT	3 cut(s)	56, 164, 226
Alw21I	GWGCWC	2 cut(s)	228, 323
Alw26I	GTCTC	1 cut(s)	41
AlwNI	CAGNNNCTG	1 cut(s)	362
ApeKI	GCWGC	2 cut(s)	257, 313
Asp700I	GAANNNNTTC	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	130
BanII	GRGCYC	1 cut(s)	228
Bbv12I	GWGCWC	2 cut(s)	228, 323
BbvI	GCAGC	2 cut(s)	244, 300
BccI	CCATC	3 cut(s)	80, 196, 275
BciT130I	CCWGG	3 cut(s)	83, 241, 384
BcoDI	GTCTC	1 cut(s)	41
BcuI	ACTAGT	1 cut(s)	179
BfaI	CTAG	3 cut(s)	71, 180, 306
BfmI	CTRYAG	1 cut(s)	314
BglII	AGATCT	1 cut(s)	375
BisI	GCNGC	2 cut(s)	258, 314
BlpI	GCTNAGC	1 cut(s)	57
BlsI	GCNGC	2 cut(s)	259, 315
Bme1390I	CCNGG	3 cut(s)	83, 241, 384
BmrFI	CCNGG	3 cut(s)	83, 241, 384
BplI	GAGNNNNNCTC	2 cut(s)	126, 158
Bpu1102I	GCTNAGC	1 cut(s)	57
BpuEI	CTTGAG	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	239, 399
BseBI	CCWGG	3 cut(s)	83, 241, 384
BseDI	CCNNGG	2 cut(s)	239, 399
BseGI	GGATG	1 cut(s)	91
BseMII	CTCAG	2 cut(s)	48, 143
BseXI	GCAGC	2 cut(s)	244, 300
BsiHKAI	GWGCWC	2 cut(s)	228, 323
BsmAI	GTCTC	1 cut(s)	41
Bsp1286I	GDGCHC	2 cut(s)	228, 323
Bsp143I	GATC	2 cut(s)	280, 375
Bsp1720I	GCTNAGC	1 cut(s)	57
BspCNI	CTCAG	2 cut(s)	49, 144
BspMAI	CTGCAG	1 cut(s)	318
BssECI	CCNNGG	2 cut(s)	239, 399
BssMI	GATC	2 cut(s)	280, 375
BssT1I	CCWWGG	1 cut(s)	399
Bst2UI	CCWGG	3 cut(s)	83, 241, 384
BstDEI	CTNAG	3 cut(s)	57, 152, 423
BstEII	GGTNACC	1 cut(s)	403
BstF5I	GGATG	1 cut(s)	91
BstKTI	GATC	2 cut(s)	283, 378
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	2 cut(s)	280, 375
BstNI	CCWGG	3 cut(s)	83, 241, 384
BstPI	GGTNACC	1 cut(s)	403
BstSCI	CCNGG	3 cut(s)	81, 239, 382
BstSFI	CTRYAG	1 cut(s)	314
BstV1I	GCAGC	2 cut(s)	244, 300
BstX2I	RGATCY	1 cut(s)	375
BstYI	RGATCY	1 cut(s)	375
BtsCI	GGATG	1 cut(s)	91
CaiI	CAGNNNCTG	1 cut(s)	362
CviAII	CATG	3 cut(s)	13, 44, 254
CviJI	RGCY	5 cut(s)	56, 74, 164, 226, 313
CviKI_1	RGCY	5 cut(s)	56, 74, 164, 226, 313
DdeI	CTNAG	3 cut(s)	57, 152, 423
DpnI	GATC	2 cut(s)	282, 377
DpnII	GATC	2 cut(s)	280, 375
Ecl136II	GAGCTC	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	228
Eco53kI	GAGCTC	1 cut(s)	226
Eco91I	GGTNACC	1 cut(s)	403
EcoICRI	GAGCTC	1 cut(s)	226
EcoO65I	GGTNACC	1 cut(s)	403
EcoRII	CCWGG	3 cut(s)	81, 239, 382
EcoT14I	CCWWGG	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	399
FaeI	CATG	3 cut(s)	16, 47, 257
FaiI	YATR	5 cut(s)	14, 45, 255, 264, 326
FatI	CATG	3 cut(s)	12, 43, 253
Fnu4HI	GCNGC	2 cut(s)	258, 314
FokI	GGATG	1 cut(s)	98
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	2 cut(s)	258, 314
FspBI	CTAG	3 cut(s)	71, 180, 306
GluI	GCNGC	2 cut(s)	258, 314
Hin1II	CATG	3 cut(s)	16, 47, 257
HinfI	GANTC	4 cut(s)	49, 200, 244, 302
HphI	GGTGA	1 cut(s)	130
Hpy188I	TCNGA	2 cut(s)	153, 352
Hpy188III	TCNNGA	4 cut(s)	25, 233, 284, 306
HpyAV	CCTTC	3 cut(s)	205, 303, 322
HpyCH4V	TGCA	1 cut(s)	316
HpyF3I	CTNAG	3 cut(s)	57, 152, 423
Hsp92II	CATG	3 cut(s)	16, 47, 257
Kzo9I	GATC	2 cut(s)	280, 375
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	9 cut(s)	38, 68, 95, 226, 253, 342, 369, 396, 422
Lsp1109I	GCAGC	2 cut(s)	244, 300
MaeI	CTAG	3 cut(s)	71, 180, 306
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	2 cut(s)	282, 377
MboI	GATC	2 cut(s)	280, 375
MboII	GAAGA	1 cut(s)	169
MflI	RGATCY	1 cut(s)	375
MhlI	GDGCHC	2 cut(s)	228, 323
MluCI	AATT	3 cut(s)	20, 36, 109
MlyI	GAGTC	2 cut(s)	43, 209
MnlI	CCTC	2 cut(s)	114, 147
MroXI	GAANNNNTTC	1 cut(s)	20
MseI	TTAA	2 cut(s)	35, 108
MslI	CAYNNNNRTG	1 cut(s)	84
MspR9I	CCNGG	3 cut(s)	83, 241, 384
MvaI	CCWGG	3 cut(s)	83, 241, 384
NdeII	GATC	2 cut(s)	280, 375
NlaIII	CATG	3 cut(s)	16, 47, 257
PdmI	GAANNNNTTC	1 cut(s)	20
PfeI	GAWTC	2 cut(s)	244, 302
PkrI	GCNGC	2 cut(s)	259, 315
PleI	GAGTC	2 cut(s)	43, 208
PpsI	GAGTC	2 cut(s)	43, 208
Psp124BI	GAGCTC	1 cut(s)	228
Psp6I	CCWGG	3 cut(s)	81, 239, 382
PspEI	GGTNACC	1 cut(s)	403
PspGI	CCWGG	3 cut(s)	81, 239, 382
PstI	CTGCAG	1 cut(s)	318
PstNI	CAGNNNCTG	1 cut(s)	362
PsuI	RGATCY	1 cut(s)	375
RseI	CAYNNNNRTG	1 cut(s)	84
SacI	GAGCTC	1 cut(s)	228
SaqAI	TTAA	2 cut(s)	35, 108
SatI	GCNGC	2 cut(s)	258, 314
Sau3AI	GATC	2 cut(s)	280, 375
SchI	GAGTC	2 cut(s)	43, 209
ScrFI	CCNGG	3 cut(s)	83, 241, 384
SduI	GDGCHC	2 cut(s)	228, 323
SetI	ASST	5 cut(s)	58, 166, 228, 361, 424
SfcI	CTRYAG	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	51
SmoI	CTYRAG	1 cut(s)	51
SpeI	ACTAGT	1 cut(s)	179
Sse9I	AATT	3 cut(s)	20, 36, 109
SspMI	CTAG	3 cut(s)	71, 180, 306
SstI	GAGCTC	1 cut(s)	228
StyD4I	CCNGG	3 cut(s)	81, 239, 382
StyI	CCWWGG	1 cut(s)	399
TaqI	TCGA	3 cut(s)	166, 203, 283
TasI	AATT	3 cut(s)	20, 36, 109
TfiI	GAWTC	2 cut(s)	244, 302
Tru1I	TTAA	2 cut(s)	35, 108
Tru9I	TTAA	2 cut(s)	35, 108
TseI	GCWGC	2 cut(s)	257, 313
TspDTI	ATGAA	4 cut(s)	29, 224, 242, 341
XbaI	TCTAGA	1 cut(s)	305
XmnI	GAANNNNTTC	1 cut(s)	20
XspI	CTAG	3 cut(s)	71, 180, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.