Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003173

Physical Location & Seq

Genomic Coordinates Forward (+)

27425772 .. 27427136

Gene Structure 1365 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0195400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGCAATGGATTTTCCTCCATACCATTTCAGATGCCCCATTTCCATGGATCTCATGAAGGACCCTGTTACCATCTCCACCGGCGTCACTTACGAACGTGTCAACATCGAGAAATGGTTCTTCACATACAAGAAGAAAACATGCCCGGCCACAATGCAAAGAATCTCAAATTTCGACACCATACCAAATCACACCCTCAAGAGGCTCATTCTTGCATGGCAAAACCAAGGGGACTCGAAATCATCTTCATCTTCGTCATGTGAGTTATTGAATTCGCATTCGGATAAACATGAGGAGATTAAAGCACTTCTCAGCACAATCATGTCGTCCCCATTCAAGGTCAGTTCCTTAAAGAAACTTCGTTCCATTATTGACATGGGTGAAGAGACGAGAAATGACTTCATTAGTTCTAATGGAGTGGAAGTTCTTGTTCAAATACTTGATCAAATCCTCACAGAGAACTCGGATTTCGTAACATTTCGGGCTTGCGAGGAGGCTCTTTGTATTCTTCACCAACTTCCCATCTCGGAAGAAGAAGGTAACACTTTTAAGTTGTTGTCAAAACAAGATTCCACCAGATCAATGGCAATCATGCTTCAGCGCGGGAGCGCTGAAGCACGCCTTCACACAATTACCATATTCAAGAAGATGGCAAAAACCAATTACGACTGGAACTTTGTGATACAAGATCAAGGTATAGATTTCTTCAAATCCTTGTTGGAGCTTGTTTCGGACGAAATATGTAGCAAAGCAAGCTCATGTGCCTTGGAAGTTCTGATAGAAATTTTGAGAGCATCAAAGAAAAACAAGCTGAGGGCAATTGAAGCAGGTGCTGTTTGTGTCCTAATAGAGCTATTGCCAGAGTCCAGCAGATCCAGATGTGAGAAAATGTTGCAAGTGATCAAGTTTCTGTGTGAATGTGCTGAGGGGAGGCAGGCCTTGGTGGAACATGGTATGGGCATTGTAGCGATTTCGAAGAAGATGATGCACGTTTCCAATGTTGCCACCAAGATTGGGGTGAAGATCATGTGGTTGGTTTGTAATTTTCACCCGACGGCGAAGGTATTGGAGGAAATGTTGATCTATGGATCGGTGAAGAAGCTTCTTGCACTGTTGCATATGGATGGCAGGTCTTCGACGAAGGATAAGGTTGTGAAGATCTTCAAGATGCATGGAAATTCATGGAAACGGTACCCTTGCTACCCTTCTGATTTGAAGGGCTACTTGGGATGTGTGAATGAACATTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

416

Amino Acids

47.12

Weight (kDa)

8.6

Isoelectric Point (pI)

49.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	7 - 76	3.8e-15	U-box domain
ARM_PUB	PF25598	100 - 403	4.6e-55	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15351 AT3G15351 AT3G15351 AT3G15351 AT3G15351 AT3G15351 AT3G15351
fragaria_vesca	FvH4_7g10630 FvH4_7g10630
malus_domestica	MD01G1029500.v1.1 MD07G1111400.v1.1 MD10G1232800.v1.1
prunus_persica	Prupe.2G134800_v2.0.a1 Prupe.2G134800_v2.0.a1 Prupe.2G134800_v2.0.a1
pyrus_communis	pycom01g05780 pycom07g09620
rosa_chinensis	RchiOBHm_Chr1g0348571
rosa_laevigata	RLG00000019092 RLG00000028638
rosa_multiflora	Rmu_sc0008668.1_g000003
rosa_roxburghii	Rroxscaffold_4G00306920 Rroxscaffold_4G00306940
rosa_rugosa	Rorug01G0195200 Rorug01G0195300 Rorug01G0195400 Rorug02G0287600 Rorug02G0287700 Rorug02G0287800 Rorug02G0287900
rosa_samantha	Rh1AG213200 Rh1BG179600 Rh1CG197500 Rh1DG209700 Rh2AG339300
rosa_wichuraiana	Rw1G018030 Rw1G018050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	818
Acc36I	ACCTGC	2 cut(s)	818, 1119
Acc65I	GGTACC	1 cut(s)	1191
AccB1I	GGYRCC	1 cut(s)	1191
AccII	CGCG	1 cut(s)	603
AciI	CCGC	1 cut(s)	603
AclWI	GGATC	3 cut(s)	57, 867, 1096
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	4 cut(s)	169, 271, 783, 1177
AcuI	CTGAAG	2 cut(s)	581, 633
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	1 cut(s)	1193
AfeI	AGCGCT	1 cut(s)	610
AfiI	CCNNNNNNNGG	3 cut(s)	201, 337, 1014
AflIII	ACRYGT	1 cut(s)	97
AgsI	TTSAA	8 cut(s)	271, 337, 434, 643, 709, 824, 1165, 1216
AjuI	GAANNNNNNNTTGG	2 cut(s)	1208, 1240
AloI	GAACNNNNNNTCC	2 cut(s)	408, 440
AluBI	AGCT	5 cut(s)	724, 756, 811, 853, 1102
AluI	AGCT	5 cut(s)	724, 756, 811, 853, 1102
Alw26I	GTCTC	1 cut(s)	380
AlwI	GGATC	3 cut(s)	57, 867, 1096
AlwNI	CAGNNNCTG	1 cut(s)	833
Aor51HI	AGCGCT	1 cut(s)	610
AoxI	GGCC	2 cut(s)	147, 936
ApoI	RAATTY	4 cut(s)	169, 271, 783, 1177
ArsI	GACNNNNNNTTYG	2 cut(s)	659, 691
Asp700I	GAANNNNTTC	2 cut(s)	116, 1160
Asp718I	GGTACC	1 cut(s)	1191
AspLEI	GCGC	2 cut(s)	603, 611
AspS9I	GGNCC	1 cut(s)	61
AsuC2I	CCSGG	1 cut(s)	146
AsuHPI	GGTGA	5 cut(s)	392, 503, 1030, 1040, 1105
AsuII	TTCGAA	1 cut(s)	974
AvaII	GGWCC	1 cut(s)	61
BanI	GGYRCC	1 cut(s)	1191
BbsI	GAAGAC	1 cut(s)	1125
BbvCI	CCTCAGC	2 cut(s)	812, 924
BccI	CCATC	4 cut(s)	80, 530, 643, 1118
BceAI	ACGGC	1 cut(s)	1071
BclI	TGATCA	2 cut(s)	442, 900
BcnI	CCSGG	1 cut(s)	146
BcoDI	GTCTC	1 cut(s)	380
BfoI	RGCGCY	1 cut(s)	612
BfuAI	ACCTGC	2 cut(s)	818, 1119
BglII	AGATCT	1 cut(s)	1158
Bme1390I	CCNGG	1 cut(s)	146
Bme18I	GGWCC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	2 cut(s)	63, 1193
BmrFI	CCNGG	1 cut(s)	146
BmsI	GCATC	4 cut(s)	23, 803, 975, 1158
BpiI	GAAGAC	1 cut(s)	1125
Bpu10I	CCTNAGC	2 cut(s)	812, 924
Bpu14I	TTCGAA	1 cut(s)	974
BpuEI	CTTGAG	1 cut(s)	182
BpuMI	CCSGG	1 cut(s)	146
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	4 cut(s)	45, 226, 765, 939
BsaXI	ACNNNNNCTCC	4 cut(s)	408, 438, 1061, 1091
Bsc4I	CCNNNNNNNGG	3 cut(s)	201, 337, 1014
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	674
Bse3DI	GCAATG	2 cut(s)	12, 1243
BseDI	CCNNGG	4 cut(s)	45, 226, 765, 939
BseGI	GGATG	2 cut(s)	1129, 1235
BseLI	CCNNNNNNNGG	3 cut(s)	201, 337, 1014
BseMI	GCAATG	2 cut(s)	12, 1243
BseMII	CTCAG	3 cut(s)	325, 803, 915
BseNI	ACTGG	1 cut(s)	674
BseRI	GAGGAG	2 cut(s)	308, 506
Bsh1236I	CGCG	1 cut(s)	603
BshFI	GGCC	2 cut(s)	149, 938
BshNI	GGYRCC	1 cut(s)	1191
BsiSI	CCGG	2 cut(s)	81, 146
BslFI	GGGAC	2 cut(s)	245, 313
BslI	CCNNNNNNNGG	3 cut(s)	201, 337, 1014
BsmAI	GTCTC	1 cut(s)	380
BsmBI	CGTCTC	1 cut(s)	380
BsmFI	GGGAC	2 cut(s)	245, 313
BsmI	GAATGC	1 cut(s)	277
BsnI	GGCC	2 cut(s)	149, 938
Bsp119I	TTCGAA	1 cut(s)	974
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	1 cut(s)	603
BspANI	GGCC	2 cut(s)	149, 938
BspCNI	CTCAG	3 cut(s)	324, 804, 916
BspFNI	CGCG	1 cut(s)	603
BspHI	TCATGA	1 cut(s)	54
BspLI	GGNNCC	2 cut(s)	63, 1193
BspMI	ACCTGC	2 cut(s)	818, 1119
BspPI	GGATC	3 cut(s)	57, 867, 1096
BspT104I	TTCGAA	1 cut(s)	974
BspT107I	GGYRCC	1 cut(s)	1191
BsrDI	GCAATG	2 cut(s)	12, 1243
BsrFI	RCCGGY	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	674
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	4 cut(s)	45, 226, 765, 939
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	4 cut(s)	45, 226, 765, 939
Bst4CI	ACNGT	2 cut(s)	1113, 1191
Bst6I	CTCTTC	1 cut(s)	378
BstACI	GRCGYC	1 cut(s)	84
BstBI	TTCGAA	1 cut(s)	974
BstC8I	GCNNGC	4 cut(s)	487, 619, 754, 936
BstDEI	CTNAG	3 cut(s)	311, 812, 924
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	1129, 1235
BstFNI	CGCG	1 cut(s)	603
BstH2I	RGCGCY	1 cut(s)	612
BstHHI	GCGC	2 cut(s)	603, 611
BstMAI	GTCTC	1 cut(s)	380
BstMWI	GCNNNNNNNGC	2 cut(s)	753, 824
BstNSI	RCATGY	1 cut(s)	144
BstSCI	CCNGG	1 cut(s)	144
BstUI	CGCG	1 cut(s)	603
BstV2I	GAAGAC	1 cut(s)	1125
BstX2I	RGATCY	3 cut(s)	49, 872, 1158
BstXI	CCANNNNNNTGG	2 cut(s)	46, 583
BstYI	RGATCY	3 cut(s)	49, 872, 1158
BsuRI	GGCC	2 cut(s)	149, 938
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	1129, 1235
BtsIMutI	CAGTG	1 cut(s)	1109
BveI	ACCTGC	2 cut(s)	818, 1119
Cac8I	GCNNGC	4 cut(s)	487, 619, 754, 936
CaiI	CAGNNNCTG	1 cut(s)	833
CciI	TCATGA	1 cut(s)	54
CfoI	GCGC	2 cut(s)	603, 611
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	61
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	1192
CspCI	CAANNNNNGTGG	2 cut(s)	994, 1029
CviQI	GTAC	1 cut(s)	1192
DdeI	CTNAG	3 cut(s)	311, 812, 924
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco130I	CCWWGG	4 cut(s)	45, 226, 765, 939
Eco147I	AGGCCT	1 cut(s)	938
Eco47I	GGWCC	1 cut(s)	61
Eco47III	AGCGCT	1 cut(s)	610
Eco57I	CTGAAG	2 cut(s)	581, 633
EcoO109I	RGGNCCY	1 cut(s)	61
EcoRI	GAATTC	1 cut(s)	271
EcoT14I	CCWWGG	4 cut(s)	45, 226, 765, 939
EcoT22I	ATGCAT	1 cut(s)	1173
ErhI	CCWWGG	4 cut(s)	45, 226, 765, 939
Esp3I	CGTCTC	1 cut(s)	380
FalI	AAGNNNNNCTT	4 cut(s)	606, 638, 1208, 1240
FaqI	GGGAC	2 cut(s)	245, 313
FauI	CCCGC	1 cut(s)	596
FauNDI	CATATG	1 cut(s)	1119
FbaI	TGATCA	2 cut(s)	442, 900
FokI	GGATG	2 cut(s)	1136, 1242
GlaI	GCGC	2 cut(s)	602, 610
HaeII	RGCGCY	1 cut(s)	612
HaeIII	GGCC	2 cut(s)	149, 938
HapII	CCGG	2 cut(s)	81, 146
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	2 cut(s)	603, 611
Hin1I	GRCGYC	1 cut(s)	84
Hin6I	GCGC	2 cut(s)	601, 609
HinP1I	GCGC	2 cut(s)	601, 609
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HindIII	AAGCTT	1 cut(s)	1100
HinfI	GANTC	4 cut(s)	162, 233, 569, 863
HpaII	CCGG	2 cut(s)	81, 146
HphI	GGTGA	5 cut(s)	392, 503, 1030, 1040, 1105
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	7 cut(s)	32, 283, 466, 529, 733, 777, 1210
Hpy188III	TCNNGA	6 cut(s)	55, 109, 199, 643, 876, 1165
Hpy8I	GTNNAC	1 cut(s)	103
Hpy99I	CGWCG	2 cut(s)	1057, 1141
HpyAV	CCTTC	7 cut(s)	52, 530, 632, 1054, 1135, 1210, 1215
HpyCH4III	ACNGT	2 cut(s)	1113, 1191
HpyCH4IV	ACGT	2 cut(s)	97, 990
HpyCH4V	TGCA	7 cut(s)	157, 215, 895, 988, 1109, 1117, 1171
HpyF10VI	GCNNNNNNNGC	2 cut(s)	753, 824
HpyF3I	CTNAG	3 cut(s)	311, 812, 924
HpySE526I	ACGT	2 cut(s)	97, 990
Hsp92I	GRCGYC	1 cut(s)	84
HspAI	GCGC	2 cut(s)	601, 609
KpnI	GGTACC	1 cut(s)	1195
Ksp22I	TGATCA	2 cut(s)	442, 900
LmnI	GCTCC	2 cut(s)	606, 721
LweI	GCATC	4 cut(s)	23, 803, 975, 1158
MaeII	ACGT	2 cut(s)	97, 990
MaeIII	GTNAC	4 cut(s)	67, 85, 472, 539
MfeI	CAATTG	1 cut(s)	819
MflI	RGATCY	3 cut(s)	49, 872, 1158
MluCI	AATT	8 cut(s)	169, 271, 630, 661, 783, 819, 1042, 1177
MlyI	GAGTC	2 cut(s)	227, 872
MmeI	TCCRAC	1 cut(s)	699
Mph1103I	ATGCAT	1 cut(s)	1173
MroXI	GAANNNNTTC	2 cut(s)	116, 1160
MseI	TTAA	3 cut(s)	300, 350, 549
MslI	CAYNNNNRTG	3 cut(s)	44, 320, 1122
MspI	CCGG	2 cut(s)	81, 146
MspR9I	CCNGG	1 cut(s)	146
MunI	CAATTG	1 cut(s)	819
Mva1269I	GAATGC	1 cut(s)	277
MvnI	CGCG	1 cut(s)	603
MwoI	GCNNNNNNNGC	2 cut(s)	753, 824
NciI	CCSGG	1 cut(s)	146
NcoI	CCATGG	1 cut(s)	45
NdeI	CATATG	1 cut(s)	1119
NlaIV	GGNNCC	2 cut(s)	63, 1193
NmuCI	GTSAC	1 cut(s)	85
NsiI	ATGCAT	1 cut(s)	1173
NspI	RCATGY	1 cut(s)	144
NspV	TTCGAA	1 cut(s)	974
PagI	TCATGA	1 cut(s)	54
PaqCI	CACCTGC	1 cut(s)	818
PceI	AGGCCT	1 cut(s)	938
PctI	GAATGC	1 cut(s)	277
PdmI	GAANNNNTTC	2 cut(s)	116, 1160
PfeI	GAWTC	2 cut(s)	162, 569
PleI	GAGTC	2 cut(s)	227, 871
PpsI	GAGTC	2 cut(s)	227, 871
PpuMI	RGGWCCY	1 cut(s)	61
Psp5II	RGGWCCY	1 cut(s)	61
PspN4I	GGNNCC	2 cut(s)	63, 1193
PspPI	GGNCC	1 cut(s)	61
PspPPI	RGGWCCY	1 cut(s)	61
PstNI	CAGNNNCTG	1 cut(s)	833
PsuI	RGATCY	3 cut(s)	49, 872, 1158
RsaI	GTAC	1 cut(s)	1193
RsaNI	GTAC	1 cut(s)	1192
RseI	CAYNNNNRTG	3 cut(s)	44, 320, 1122
SaqAI	TTAA	3 cut(s)	300, 350, 549
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	2 cut(s)	227, 872
ScrFI	CCNGG	1 cut(s)	146
SfaNI	GCATC	4 cut(s)	23, 803, 975, 1158
SfuI	TTCGAA	1 cut(s)	974
SgrAI	CRCCGGYG	1 cut(s)	80
SinI	GGWCC	1 cut(s)	61
SmiMI	CAYNNNNRTG	3 cut(s)	44, 320, 1122
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	8 cut(s)	169, 271, 630, 661, 783, 819, 1042, 1177
SseBI	AGGCCT	1 cut(s)	938
SsiI	CCGC	1 cut(s)	603
StuI	AGGCCT	1 cut(s)	938
StyD4I	CCNGG	1 cut(s)	144
StyI	CCWWGG	4 cut(s)	45, 226, 765, 939
TaaI	ACNGT	2 cut(s)	1113, 1191
TaiI	ACGT	2 cut(s)	100, 993
TaqI	TCGA	5 cut(s)	108, 174, 236, 974, 1136
TasI	AATT	8 cut(s)	169, 271, 630, 661, 783, 819, 1042, 1177
TfiI	GAWTC	2 cut(s)	162, 569
Tru1I	TTAA	3 cut(s)	300, 350, 549
Tru9I	TTAA	3 cut(s)	300, 350, 549
TscAI	CASTG	1 cut(s)	1116
TseFI	GTSAC	1 cut(s)	85
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	4 cut(s)	71, 237, 391, 1170
TspRI	CASTG	1 cut(s)	1116
VpaK11BI	GGWCC	1 cut(s)	61
XapI	RAATTY	4 cut(s)	169, 271, 783, 1177
XceI	RCATGY	1 cut(s)	144
XcmI	CCANNNNNNNNNTGG	2 cut(s)	373, 580
XmnI	GAANNNNTTC	2 cut(s)	116, 1160
Zsp2I	ATGCAT	1 cut(s)	1173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.