AT3G15605

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002843
Physical Location & Seq
Forward (+)
5287323 .. 5290971
3649 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G15605.3

Sequence Viewer

Length: 1200 bp
ATGGGGAAATGCAATGTTGTATGCACATCTGATGACCGAAGAAACCCACGACCAGGAACCAAGGAGCTGCGGAGAGCTAAATATATCTTCTCCCGCACTTTTGATACAAGACTCAGAATTATATCAGAAGACTTTGCAGATGCTATAGCCGGAATTGGAGTGGATAAACTCTTCAACATGAGAAGAGATAAACAGCCTGTAAAACGTCTAAACTCAAGCGCAGCTGCCATTACTAGGGCTTCTCCAGTTAAATCTTTTCGTCCAGATTTGGGATCAACAAAGTTAGGTAAACATGATAACAGAGATGCAAAGCTGATGAGTAGAACAAGCTCGTTAAAGAAAGTCACTTTTCTGGAGGACCGTGCTGATCATGTACATGTGAAAAGGAACCCTCCTGTCAATACTGAAACCACTACAAGAGGTCAGATACCGATACTCAAAACAAGAGCATTTGGGGAGTTATATGCTTCAGGTTCATCAGTGAATGCTAAGCCTTCTAAAAAGAGAAAGCTTATACTCAACACGCCAGAAACAGATGATTCAGATGATCAAGGCCCTCAATCAGGAGAGAAGAAATTAATTAAAAATCCTCCTCTTGTAGAAAAGGCTCCAAGTCAGAACATCGAGAAAAAAAGCTGGTACAAGAAACTGCCTTTTGAGGACGAACTAAAGCCGGCTATAGAAAAAGGTAGGGTGCTCTTAATTGAGAACCTGGAACCATCATACACATCGCTGGAGGTAGAGTTTCTTTTTAGGCAAGCATTCAAAGAAGGAGTTGATGCTAAGATGATCCCTTCAAGTCCCATGTCTAGCCCACATAGTGGTATATGCAGGGCTCTTGTGATTTTTGGAACCACAAAGGCAGCTGATTCTGCTATGTCGCGGTTAAATGAAGATTGTCTGATGTTATCTGGCCAGAGAGCTCTAACGGGTAGCAAAAATGTCCCAGTCGAAATTGGAAGATGTAGAAGCTTTACTGGCCATTTTAACATGGTGGATAGATCTCTGATGACGGCTCAGAAGGTAAGTTGTTGCATTACTCTGCGCTTATTTTCAGTTGTCATTTCACTTGTCATGGTCACACATCGAAAGCCCAACAGCCCATGCCAAATTACTGAATATTACAAATTGACCCCACTATTTAGTCTTATAATCGTAAACAGACCCCATAAATTCGTAAATTTTCAGCCACATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH RRM_1

Protein Analysis

399

Amino Acids

44.76

Weight (kDa)

9.86

Isoelectric Point (pI)

48.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1151
AccB7I CCANNNNNTGG 1 cut(s) 821
AccII CGCG 1 cut(s) 883
AciI CCGC 3 cut(s) 70, 94, 883
AclWI GGATC 2 cut(s) 280, 784
AcoI YGGCCR 2 cut(s) 913, 979
AcsI RAATTY 2 cut(s) 1172, 1180
AcuI CTGAAG 1 cut(s) 453
AdeI CACNNNGTG 1 cut(s) 821
AfaI GTAC 2 cut(s) 375, 641
AfiI CCNNNNNNNGG 5 cut(s) 53, 234, 269, 563, 821
AflIII ACRYGT 1 cut(s) 376
AgsI TTSAA 3 cut(s) 175, 766, 798
AjnI CCWGG 2 cut(s) 52, 711
Alw21I GWGCWC 2 cut(s) 699, 925
AlwI GGATC 2 cut(s) 280, 784
AoxI GGCC 3 cut(s) 553, 913, 979
ApeKI GCWGC 4 cut(s) 67, 221, 224, 863
ApoI RAATTY 2 cut(s) 1172, 1180
AseI ATTAAT 1 cut(s) 578
AspLEI GCGC 2 cut(s) 221, 1047
AspS9I GGNCC 2 cut(s) 358, 554
AvaII GGWCC 1 cut(s) 358
BalI TGGCCA 2 cut(s) 915, 981
BanII GRGCYC 2 cut(s) 838, 925
BbsI GAAGAC 1 cut(s) 135
Bbv12I GWGCWC 2 cut(s) 699, 925
BbvI GCAGC 4 cut(s) 54, 211, 233, 875
BccI CCATC 1 cut(s) 727
BceAI ACGGC 1 cut(s) 1029
BciT130I CCWGG 2 cut(s) 54, 713
BclI TGATCA 2 cut(s) 367, 547
BfaI CTAG 2 cut(s) 234, 810
BfmI CTRYAG 2 cut(s) 144, 678
BglII AGATCT 1 cut(s) 1001
BisI GCNGC 4 cut(s) 68, 222, 225, 864
BlpI GCTNAGC 1 cut(s) 489
BlsI GCNGC 4 cut(s) 69, 223, 226, 865
Bme1390I CCNGG 2 cut(s) 54, 713
Bme18I GGWCC 1 cut(s) 358
BmgT120I GGNCC 2 cut(s) 358, 554
BmiI GGNNCC 5 cut(s) 58, 389, 609, 717, 853
BmrFI CCNGG 2 cut(s) 54, 713
BmrI ACTGGG 1 cut(s) 941
BmsI GCATC 3 cut(s) 130, 295, 769
BmuI ACTGGG 1 cut(s) 941
BpiI GAAGAC 1 cut(s) 135
BpmI CTGGAG 3 cut(s) 228, 374, 755
Bpu1102I GCTNAGC 1 cut(s) 489
BpuEI CTTGAG 1 cut(s) 199
BsaJI CCNNGG 1 cut(s) 60
BsaXI ACNNNNNCTCC 2 cut(s) 728, 758
Bsc4I CCNNNNNNNGG 5 cut(s) 53, 234, 269, 563, 821
Bse118I RCCGGY 1 cut(s) 673
Bse1I ACTGG 3 cut(s) 245, 947, 982
Bse3DI GCAATG 1 cut(s) 19
BseBI CCWGG 2 cut(s) 54, 713
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 1192
BseLI CCNNNNNNNGG 5 cut(s) 53, 234, 269, 563, 821
BseMI GCAATG 1 cut(s) 19
BseMII CTCAG 2 cut(s) 127, 1031
BseNI ACTGG 3 cut(s) 245, 947, 982
BseRI GAGGAG 1 cut(s) 582
BseXI GCAGC 4 cut(s) 54, 211, 233, 875
Bsh1236I CGCG 1 cut(s) 883
BshFI GGCC 3 cut(s) 555, 915, 981
BsiHKAI GWGCWC 2 cut(s) 699, 925
BsiSI CCGG 2 cut(s) 150, 674
BslFI GGGAC 2 cut(s) 786, 929
BslI CCNNNNNNNGG 5 cut(s) 53, 234, 269, 563, 821
BsmFI GGGAC 2 cut(s) 786, 929
BsmI GAATGC 2 cut(s) 490, 761
BsnI GGCC 3 cut(s) 555, 915, 981
Bsp1286I GDGCHC 3 cut(s) 699, 838, 925
Bsp1407I TGTACA 1 cut(s) 373
Bsp143I GATC 5 cut(s) 272, 367, 547, 789, 1001
Bsp1720I GCTNAGC 1 cut(s) 489
BspACI CCGC 3 cut(s) 70, 94, 883
BspANI GGCC 3 cut(s) 555, 915, 981
BspCNI CTCAG 2 cut(s) 126, 1030
BspFNI CGCG 1 cut(s) 883
BspLI GGNNCC 5 cut(s) 58, 389, 609, 717, 853
BspPI GGATC 2 cut(s) 280, 784
BsrDI GCAATG 1 cut(s) 19
BsrFI RCCGGY 1 cut(s) 673
BsrGI TGTACA 1 cut(s) 373
BsrI ACTGG 3 cut(s) 245, 947, 982
BssAI RCCGGY 1 cut(s) 673
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 5 cut(s) 272, 367, 547, 789, 1001
BssT1I CCWWGG 1 cut(s) 60
Bst2UI CCWGG 2 cut(s) 54, 713
Bst4CI ACNGT 1 cut(s) 362
Bst6I CTCTTC 2 cut(s) 176, 178
BstAUI TGTACA 1 cut(s) 373
BstC8I GCNNGC 2 cut(s) 675, 759
BstDEI CTNAG 4 cut(s) 113, 489, 783, 1017
BstENI CCTNNNNNAGG 1 cut(s) 561
BstF5I GGATG 1 cut(s) 1192
BstFNI CGCG 1 cut(s) 883
BstHHI GCGC 2 cut(s) 221, 1047
BstKTI GATC 5 cut(s) 275, 370, 550, 792, 1004
BstMBI GATC 5 cut(s) 272, 367, 547, 789, 1001
BstMWI GCNNNNNNNGC 2 cut(s) 872, 978
BstNI CCWGG 2 cut(s) 54, 713
BstNSI RCATGY 1 cut(s) 380
BstSCI CCNGG 2 cut(s) 52, 711
BstSFI CTRYAG 2 cut(s) 144, 678
BstUI CGCG 1 cut(s) 883
BstV1I GCAGC 4 cut(s) 54, 211, 233, 875
BstV2I GAAGAC 1 cut(s) 135
BstX2I RGATCY 1 cut(s) 1001
BstYI RGATCY 1 cut(s) 1001
BsuRI GGCC 3 cut(s) 555, 915, 981
BtgZI GCGATG 1 cut(s) 714
BtsCI GGATG 1 cut(s) 1192
BtsIMutI CAGTG 1 cut(s) 486
Cac8I GCNNGC 2 cut(s) 675, 759
CfoI GCGC 2 cut(s) 221, 1047
Cfr10I RCCGGY 1 cut(s) 673
Cfr13I GGNCC 2 cut(s) 358, 554
Csp6I GTAC 2 cut(s) 374, 640
CviAII CATG 8 cut(s) 178, 293, 371, 377, 805, 991, 1075, 1104
CviQI GTAC 2 cut(s) 374, 640
DdeI CTNAG 4 cut(s) 113, 489, 783, 1017
DpnI GATC 5 cut(s) 274, 369, 549, 791, 1003
DpnII GATC 5 cut(s) 272, 367, 547, 789, 1001
DraIII CACNNNGTG 1 cut(s) 821
EaeI YGGCCR 2 cut(s) 913, 979
Eam1104I CTCTTC 2 cut(s) 176, 178
EarI CTCTTC 2 cut(s) 176, 178
Ecl136II GAGCTC 1 cut(s) 923
Eco130I CCWWGG 1 cut(s) 60
Eco24I GRGCYC 2 cut(s) 838, 925
Eco47I GGWCC 1 cut(s) 358
Eco53kI GAGCTC 1 cut(s) 923
Eco57I CTGAAG 1 cut(s) 453
EcoICRI GAGCTC 1 cut(s) 923
EcoNI CCTNNNNNAGG 1 cut(s) 561
EcoO109I RGGNCCY 1 cut(s) 554
EcoRII CCWGG 2 cut(s) 52, 711
EcoT14I CCWWGG 1 cut(s) 60
EcoT38I GRGCYC 2 cut(s) 838, 925
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 8 cut(s) 181, 296, 374, 380, 808, 994, 1078, 1107
FaqI GGGAC 2 cut(s) 786, 929
FatI CATG 8 cut(s) 177, 292, 370, 376, 804, 990, 1074, 1103
FauI CCCGC 1 cut(s) 101
FbaI TGATCA 2 cut(s) 367, 547
Fnu4HI GCNGC 4 cut(s) 68, 222, 225, 864
FokI GGATG 1 cut(s) 1179
FriOI GRGCYC 2 cut(s) 838, 925
Fsp4HI GCNGC 4 cut(s) 68, 222, 225, 864
FspBI CTAG 2 cut(s) 234, 810
GlaI GCGC 2 cut(s) 220, 1046
GluI GCNGC 4 cut(s) 68, 222, 225, 864
GsuI CTGGAG 3 cut(s) 228, 374, 755
HaeIII GGCC 3 cut(s) 555, 915, 981
HapII CCGG 2 cut(s) 150, 674
HhaI GCGC 2 cut(s) 221, 1047
Hin1II CATG 8 cut(s) 181, 296, 374, 380, 808, 994, 1078, 1107
Hin6I GCGC 2 cut(s) 219, 1045
HinP1I GCGC 2 cut(s) 219, 1045
HindIII AAGCTT 2 cut(s) 509, 970
HinfI GANTC 3 cut(s) 111, 539, 869
HpaII CCGG 2 cut(s) 150, 674
Hpy166II GTNNAC 2 cut(s) 290, 1159
Hpy188I TCNGA 9 cut(s) 31, 116, 127, 426, 544, 618, 903, 1008, 1020
Hpy188III TCNNGA 4 cut(s) 263, 353, 564, 625
Hpy8I GTNNAC 2 cut(s) 290, 1159
HpyAV CCTTC 4 cut(s) 504, 764, 804, 1015
HpyCH4III ACNGT 1 cut(s) 362
HpyCH4IV ACGT 1 cut(s) 205
HpyCH4V TGCA 6 cut(s) 12, 24, 137, 308, 831, 1035
HpyF10VI GCNNNNNNNGC 2 cut(s) 872, 978
HpyF3I CTNAG 4 cut(s) 113, 489, 783, 1017
HpySE526I ACGT 1 cut(s) 205
Hsp92II CATG 8 cut(s) 181, 296, 374, 380, 808, 994, 1078, 1107
HspAI GCGC 2 cut(s) 219, 1045
KroI GCCGGC 1 cut(s) 673
KroNI GCCGGC 1 cut(s) 675
Ksp22I TGATCA 2 cut(s) 367, 547
Kzo9I GATC 5 cut(s) 272, 367, 547, 789, 1001
LmnI GCTCC 2 cut(s) 64, 613
Lsp1109I GCAGC 4 cut(s) 54, 211, 233, 875
LweI GCATC 3 cut(s) 130, 295, 769
MaeI CTAG 2 cut(s) 234, 810
MaeII ACGT 1 cut(s) 205
MaeIII GTNAC 2 cut(s) 343, 1078
MalI GATC 5 cut(s) 274, 369, 549, 791, 1003
MboI GATC 5 cut(s) 272, 367, 547, 789, 1001
MboII GAAGA 8 cut(s) 51, 79, 140, 163, 195, 583, 905, 972
MflI RGATCY 1 cut(s) 1001
MhlI GDGCHC 3 cut(s) 699, 838, 925
MlsI TGGCCA 2 cut(s) 915, 981
MluNI TGGCCA 2 cut(s) 915, 981
MlyI GAGTC 1 cut(s) 105
MnlI CCTC 8 cut(s) 349, 402, 413, 567, 600, 603, 652, 730
Mox20I TGGCCA 2 cut(s) 915, 981
MroNI GCCGGC 1 cut(s) 673
MscI TGGCCA 2 cut(s) 915, 981
MseI TTAA 7 cut(s) 249, 335, 578, 582, 701, 887, 987
MslI CAYNNNNRTG 1 cut(s) 375
Msp20I TGGCCA 2 cut(s) 915, 981
MspA1I CMGCKG 2 cut(s) 224, 866
MspI CCGG 2 cut(s) 150, 674
MspR9I CCNGG 2 cut(s) 54, 713
Mva1269I GAATGC 2 cut(s) 490, 761
MvaI CCWGG 2 cut(s) 54, 713
MvnI CGCG 1 cut(s) 883
MwoI GCNNNNNNNGC 2 cut(s) 872, 978
NaeI GCCGGC 1 cut(s) 675
NdeII GATC 5 cut(s) 272, 367, 547, 789, 1001
NgoMIV GCCGGC 1 cut(s) 673
NlaIII CATG 8 cut(s) 181, 296, 374, 380, 808, 994, 1078, 1107
NlaIV GGNNCC 5 cut(s) 58, 389, 609, 717, 853
NmuCI GTSAC 2 cut(s) 343, 1078
NspI RCATGY 1 cut(s) 380
PacI TTAATTAA 1 cut(s) 582
PciI ACATGT 1 cut(s) 376
PctI GAATGC 2 cut(s) 490, 761
PdiI GCCGGC 1 cut(s) 675
PfeI GAWTC 2 cut(s) 539, 869
PflMI CCANNNNNTGG 1 cut(s) 821
PkrI GCNGC 4 cut(s) 69, 223, 226, 865
PleI GAGTC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 105
PscI ACATGT 1 cut(s) 376
PshBI ATTAAT 1 cut(s) 578
PsiI TTATAA 1 cut(s) 1151
Psp124BI GAGCTC 1 cut(s) 925
Psp6I CCWGG 2 cut(s) 52, 711
PspGI CCWGG 2 cut(s) 52, 711
PspN4I GGNNCC 5 cut(s) 58, 389, 609, 717, 853
PspPI GGNCC 2 cut(s) 358, 554
PsuI RGATCY 1 cut(s) 1001
PvuII CAGCTG 2 cut(s) 224, 866
RsaI GTAC 2 cut(s) 375, 641
RsaNI GTAC 2 cut(s) 374, 640
RseI CAYNNNNRTG 1 cut(s) 375
SacI GAGCTC 1 cut(s) 925
SaqAI TTAA 7 cut(s) 249, 335, 578, 582, 701, 887, 987
SatI GCNGC 4 cut(s) 68, 222, 225, 864
Sau3AI GATC 5 cut(s) 272, 367, 547, 789, 1001
Sau96I GGNCC 2 cut(s) 358, 554
SchI GAGTC 1 cut(s) 105
ScrFI CCNGG 2 cut(s) 54, 713
SduI GDGCHC 3 cut(s) 699, 838, 925
SfaNI GCATC 3 cut(s) 130, 295, 769
SfcI CTRYAG 2 cut(s) 144, 678
SinI GGWCC 1 cut(s) 358
SmiMI CAYNNNNRTG 1 cut(s) 375
SmlI CTYRAG 1 cut(s) 214
SmoI CTYRAG 1 cut(s) 214
SsiI CCGC 3 cut(s) 70, 94, 883
SspI AATATT 1 cut(s) 1121
SspMI CTAG 2 cut(s) 234, 810
SstI GAGCTC 1 cut(s) 925
StyD4I CCNGG 2 cut(s) 52, 711
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 1 cut(s) 362
TaiI ACGT 1 cut(s) 208
TaqI TCGA 3 cut(s) 624, 951, 1087
TaqII GACCGA 1 cut(s) 51
TatI WGTACW 1 cut(s) 373
TfiI GAWTC 2 cut(s) 539, 869
Tru1I TTAA 7 cut(s) 249, 335, 578, 582, 701, 887, 987
Tru9I TTAA 7 cut(s) 249, 335, 578, 582, 701, 887, 987
TscAI CASTG 1 cut(s) 486
TseFI GTSAC 2 cut(s) 343, 1078
TseI GCWGC 4 cut(s) 67, 221, 224, 863
Tsp45I GTSAC 2 cut(s) 343, 1078
TspDTI ATGAA 2 cut(s) 465, 906
TspRI CASTG 1 cut(s) 486
Van91I CCANNNNNTGG 1 cut(s) 821
VpaK11BI GGWCC 1 cut(s) 358
VspI ATTAAT 1 cut(s) 578
XagI CCTNNNNNAGG 1 cut(s) 561
XapI RAATTY 2 cut(s) 1172, 1180
XceI RCATGY 1 cut(s) 380
XspI CTAG 2 cut(s) 234, 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.