Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002843

Physical Location & Seq

Genomic Coordinates Forward (+)

31879026 .. 31892794

Gene Structure 13769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00107850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTTGGACTGGTTACATTTATTCTTTCATGGCCTTGCAGGAAAGGCTTTTGTTATATTTAAGTCATCAGATGATGCTGAATCTGCTATAGTTGAGTTAAATAGGAGATGCCTGACTCTGGCAGATGGGAGACCTGTCATCGGTACCATCTGCAGAGGGACTCTAAAAGTGCCTGACAAAACATCCAGATTTTATGGACATCTAACGATTGACAAACATCGGCTTAAAAGCCAACGTGAAGAGATGAGAAAAGCAGTATCAACGTCGCACTTTGCTCAGCCCAATACAGTTGAGTATGATATGGCAATGGACTGGTGTTTACAGCAGGAAAGGTCAGATTTGTGGTGGAAGGCTTTATATCAGGACCACGAGGTGGGCTGCAGCGTGGGATGTGGGCTGCAAGGGCAGGGCTGCAGCGTGGGGGAGCAGCCCGCGAGAAGGCTAGCACGGGCTGTAGGCTGCAGCGAGGGAGAGCAGCTTGTGGCTAGGGCTTGTGGCAATTTTGGTGAGGGGAGTTTTAGGGTTTTGTTTTGTTTTGCTTTTTTTTTTCTTTTGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH RRM_1

Protein Analysis

186

Amino Acids

20.86

Weight (kDa)

7.58

Isoelectric Point (pI)

37.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15605 AT3G15605 AT3G15605 AT3G15605
fragaria_vesca	FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540
malus_domestica	MD09G1219000.v1.1
prunus_persica	Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1
pyrus_communis	pycom09g13690
rosa_chinensis	RchiOBHm_Chr2g0136961
rosa_laevigata	RLG00000019591
rosa_multiflora	Rmu_co8420089.1_g000001 Rmu_sc0001374.1_g000069
rosa_roxburghii	Rroxscaffold_2G00107840 Rroxscaffold_2G00107850
rosa_rugosa	Rorug02G0335700 Rorug02G0335800 Rorug02G0335900 Rorug02G0336000 Rorug02G0336100 Rorug02G0336200
rosa_samantha	Rh2AG385600 Rh2BG392600 Rh2CG372800 Rh2DG408700
rosa_wichuraiana	Rw2G031540 Rw2G031550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	143
AccB1I	GGYRCC	1 cut(s)	143
AccB7I	CCANNNNNTGG	1 cut(s)	373
AccII	CGCG	1 cut(s)	434
AciI	CCGC	1 cut(s)	432
AdeI	CACNNNGTG	1 cut(s)	373
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	4 cut(s)	118, 140, 373, 438
AluBI	AGCT	1 cut(s)	478
AluI	AGCT	1 cut(s)	478
Alw26I	GTCTC	1 cut(s)	124
AoxI	GGCC	1 cut(s)	31
ApeKI	GCWGC	9 cut(s)	378, 381, 397, 411, 414, 427, 459, 462, 475
Asp718I	GGTACC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	364
AsuHPI	GGTGA	1 cut(s)	518
AsuNHI	GCTAGC	1 cut(s)	442
AvaII	GGWCC	1 cut(s)	364
BanI	GGYRCC	1 cut(s)	143
BauI	CACGAG	1 cut(s)	368
BbvI	GCAGC	9 cut(s)	365, 384, 393, 398, 426, 439, 446, 474, 487
BccI	CCATC	2 cut(s)	119, 155
BcoDI	GTCTC	1 cut(s)	124
BfaI	CTAG	3 cut(s)	443, 486, 559
BfmI	CTRYAG	6 cut(s)	87, 151, 379, 412, 453, 460
BisI	GCNGC	9 cut(s)	379, 382, 398, 412, 415, 428, 460, 463, 476
BlpI	GCTNAGC	1 cut(s)	276
BlsI	GCNGC	9 cut(s)	380, 383, 399, 413, 416, 429, 461, 464, 477
Bme18I	GGWCC	1 cut(s)	364
BmgT120I	GGNCC	1 cut(s)	364
BmiI	GGNNCC	1 cut(s)	145
BmsI	GCATC	2 cut(s)	64, 98
BmtI	GCTAGC	1 cut(s)	446
Bpu1102I	GCTNAGC	1 cut(s)	276
BsaI	GGTCTC	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	4 cut(s)	118, 140, 373, 438
Bse1I	ACTGG	2 cut(s)	14, 317
Bse3DI	GCAATG	1 cut(s)	312
BseGI	GGATG	2 cut(s)	182, 395
BseLI	CCNNNNNNNGG	4 cut(s)	118, 140, 373, 438
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	1 cut(s)	290
BseNI	ACTGG	2 cut(s)	14, 317
BseXI	GCAGC	9 cut(s)	365, 384, 393, 398, 426, 439, 446, 474, 487
Bsh1236I	CGCG	1 cut(s)	434
BshFI	GGCC	1 cut(s)	33
BshNI	GGYRCC	1 cut(s)	143
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	4 cut(s)	118, 140, 373, 438
BsmAI	GTCTC	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	172
BsnI	GGCC	1 cut(s)	33
Bso31I	GGTCTC	1 cut(s)	124
Bsp1720I	GCTNAGC	1 cut(s)	276
BspACI	CCGC	1 cut(s)	432
BspANI	GGCC	1 cut(s)	33
BspCNI	CTCAG	1 cut(s)	289
BspFNI	CGCG	1 cut(s)	434
BspLI	GGNNCC	1 cut(s)	145
BspMAI	CTGCAG	4 cut(s)	155, 383, 416, 464
BspOI	GCTAGC	1 cut(s)	446
BspT107I	GGYRCC	1 cut(s)	143
BspTNI	GGTCTC	1 cut(s)	124
BsrDI	GCAATG	1 cut(s)	312
BsrI	ACTGG	2 cut(s)	14, 317
BssSI	CACGAG	1 cut(s)	368
Bst2BI	CACGAG	1 cut(s)	368
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	1 cut(s)	234
BstC8I	GCNNGC	2 cut(s)	432, 444
BstDEI	CTNAG	1 cut(s)	276
BstF5I	GGATG	2 cut(s)	182, 395
BstFNI	CGCG	1 cut(s)	434
BstMAI	GTCTC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 83, 403
BstSFI	CTRYAG	6 cut(s)	87, 151, 379, 412, 453, 460
BstUI	CGCG	1 cut(s)	434
BstV1I	GCAGC	9 cut(s)	365, 384, 393, 398, 426, 439, 446, 474, 487
BsuRI	GGCC	1 cut(s)	33
BtsCI	GGATG	2 cut(s)	182, 395
Cac8I	GCNNGC	2 cut(s)	432, 444
Cfr13I	GGNCC	1 cut(s)	364
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	1 cut(s)	29
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	1 cut(s)	276
DraIII	CACNNNGTG	1 cut(s)	373
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco31I	GGTCTC	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	364
FaeI	CATG	1 cut(s)	32
FaiI	YATR	7 cut(s)	30, 56, 89, 195, 297, 302, 358
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	1 cut(s)	28
FauI	CCCGC	1 cut(s)	439
Fnu4HI	GCNGC	9 cut(s)	379, 382, 398, 412, 415, 428, 460, 463, 476
FokI	GGATG	2 cut(s)	169, 402
Fsp4HI	GCNGC	9 cut(s)	379, 382, 398, 412, 415, 428, 460, 463, 476
FspBI	CTAG	3 cut(s)	443, 486, 559
GluI	GCNGC	9 cut(s)	379, 382, 398, 412, 415, 428, 460, 463, 476
HaeIII	GGCC	1 cut(s)	33
Hin1II	CATG	1 cut(s)	32
HinfI	GANTC	3 cut(s)	80, 115, 160
HphI	GGTGA	1 cut(s)	518
Hpy166II	GTNNAC	1 cut(s)	320
Hpy188I	TCNGA	2 cut(s)	70, 337
Hpy188III	TCNNGA	2 cut(s)	186, 362
Hpy8I	GTNNAC	1 cut(s)	320
Hpy99I	CGWCG	1 cut(s)	268
HpyAV	CCTTC	2 cut(s)	343, 432
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	2 cut(s)	235, 263
HpyCH4V	TGCA	6 cut(s)	38, 153, 381, 400, 414, 462
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 83, 403
HpyF3I	CTNAG	1 cut(s)	276
HpySE526I	ACGT	2 cut(s)	235, 263
Hsp92II	CATG	1 cut(s)	32
KpnI	GGTACC	1 cut(s)	147
LmnI	GCTCC	1 cut(s)	424
Lsp1109I	GCAGC	9 cut(s)	365, 384, 393, 398, 426, 439, 446, 474, 487
LweI	GCATC	2 cut(s)	64, 98
MaeI	CTAG	3 cut(s)	443, 486, 559
MaeII	ACGT	2 cut(s)	235, 263
MaeIII	GTNAC	1 cut(s)	12
MboII	GAAGA	1 cut(s)	251
MluCI	AATT	1 cut(s)	499
MlyI	GAGTC	2 cut(s)	109, 154
MnlI	CCTC	4 cut(s)	149, 364, 460, 502
MseI	TTAA	3 cut(s)	60, 98, 225
MvnI	CGCG	1 cut(s)	434
MwoI	GCNNNNNNNGC	3 cut(s)	44, 83, 403
NheI	GCTAGC	1 cut(s)	442
NlaIII	CATG	1 cut(s)	32
NlaIV	GGNNCC	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	80
PflMI	CCANNNNNTGG	1 cut(s)	373
PkrI	GCNGC	9 cut(s)	380, 383, 399, 413, 416, 429, 461, 464, 477
PleI	GAGTC	2 cut(s)	109, 154
PpsI	GAGTC	2 cut(s)	109, 154
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	1 cut(s)	364
PstI	CTGCAG	4 cut(s)	155, 383, 416, 464
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SaqAI	TTAA	3 cut(s)	60, 98, 225
SatI	GCNGC	9 cut(s)	379, 382, 398, 412, 415, 428, 460, 463, 476
Sau96I	GGNCC	1 cut(s)	364
SchI	GAGTC	2 cut(s)	109, 154
SetI	ASST	6 cut(s)	136, 238, 266, 335, 375, 480
SfaNI	GCATC	2 cut(s)	64, 98
SfcI	CTRYAG	6 cut(s)	87, 151, 379, 412, 453, 460
SinI	GGWCC	1 cut(s)	364
Sse9I	AATT	1 cut(s)	499
SsiI	CCGC	1 cut(s)	432
SspMI	CTAG	3 cut(s)	443, 486, 559
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	2 cut(s)	238, 266
TasI	AATT	1 cut(s)	499
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	3 cut(s)	60, 98, 225
Tru9I	TTAA	3 cut(s)	60, 98, 225
TseI	GCWGC	9 cut(s)	378, 381, 397, 411, 414, 427, 459, 462, 475
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	373
VpaK11BI	GGWCC	1 cut(s)	364
XspI	CTAG	3 cut(s)	443, 486, 559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.