Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002843

Physical Location & Seq

Genomic Coordinates Reverse (-)

41751958 .. 41752757

Gene Structure 800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0335700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTTTTCTGTGCCTGCCCTATTGCAAAAGACATTATCACAGGGGCCCATATTTAATCTACATGCCTTTATATCGCCAATCTTTCACTTCAAAGAATGGATGCTCGAGCAAGTAGTGAATCTCCAAACGGATGTGTTCCAAAAATTACTCATGGTGTTATGGGGTCTGTGGAAGAATTGCAATGACACCCTCTGGTCGTGCAAACCTCAGACAGCACAAAACAATGTGTGTGGAACCATGGCTTGGTATTTTGAGTATAAACAAGCCAACAGCTCTTCTGTTAAACCTGTTACCATTCGAACGAAACAGAAATGGACTACACCTAATCCGGGGACATTAAAGCTTAATGTGGATGGGGCTTTTTTGCTAAATTACACTGAAGGAGGAGTTGGAGGTGTGCTTCGGGACTCAAGTGGCCTGGTCATTTTGTTGCTGCTTTTGCTCACCATGTCAGTCATGCTACTTCTGCAAAGCAGTCTGGAATTTGGGAACATAATTGATGACATTCGAATGGGGCTGCAAAATAATGTGGGAATCTCTATCAGTCACACAGCAAGAACTGCCAATGCAGTGGCTCATAGATTAGCTAGTGAAGCTTATGAATCTGTGGAAAGTATAGATTGGCAGGGCAGTGCTCCTGAAATACATAGAGATGTTCTAAGTTACGATTGTAATCCTATTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH RRM_1

Protein Analysis

228

Amino Acids

25.43

Weight (kDa)

6.19

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15605 AT3G15605 AT3G15605 AT3G15605
fragaria_vesca	FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540
malus_domestica	MD09G1219000.v1.1
prunus_persica	Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1
pyrus_communis	pycom09g13690
rosa_chinensis	RchiOBHm_Chr2g0136961
rosa_laevigata	RLG00000019591
rosa_multiflora	Rmu_co8420089.1_g000001 Rmu_sc0001374.1_g000069
rosa_roxburghii	Rroxscaffold_2G00107840 Rroxscaffold_2G00107850
rosa_rugosa	Rorug02G0335700 Rorug02G0335800 Rorug02G0335900 Rorug02G0336000 Rorug02G0336100 Rorug02G0336200
rosa_samantha	Rh2AG385600 Rh2BG392600 Rh2CG372800 Rh2DG408700
rosa_wichuraiana	Rw2G031540 Rw2G031550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	243
AcsI	RAATTY	1 cut(s)	482
AcuI	CTGAAG	1 cut(s)	399
AfiI	CCNNNNNNNGG	2 cut(s)	243, 329
AgsI	TTSAA	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	417
AjuI	GAANNNNNNNTTGG	4 cut(s)	226, 258, 372, 404
AluBI	AGCT	4 cut(s)	273, 343, 587, 596
AluI	AGCT	4 cut(s)	273, 343, 587, 596
Alw21I	GWGCWC	1 cut(s)	637
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	2 cut(s)	44, 415
ApaI	GGGCCC	1 cut(s)	48
ApeKI	GCWGC	2 cut(s)	433, 517
ApoI	RAATTY	1 cut(s)	482
AspS9I	GGNCC	2 cut(s)	44, 45
AsuC2I	CCSGG	1 cut(s)	330
AsuHPI	GGTGA	1 cut(s)	436
AsuII	TTCGAA	2 cut(s)	298, 508
AvaI	CYCGRG	1 cut(s)	104
BaeGI	GKGCMC	1 cut(s)	48
BanII	GRGCYC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	637
BbvI	GCAGC	2 cut(s)	420, 504
BccI	CCATC	1 cut(s)	347
BciT130I	CCWGG	1 cut(s)	419
BcnI	CCSGG	1 cut(s)	330
BfaI	CTAG	1 cut(s)	588
BisI	GCNGC	2 cut(s)	434, 518
BlsI	GCNGC	2 cut(s)	435, 519
Bme1390I	CCNGG	2 cut(s)	330, 419
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	2 cut(s)	44, 45
BmiI	GGNNCC	3 cut(s)	45, 46, 235
BmrFI	CCNGG	2 cut(s)	330, 419
BmsI	GCATC	1 cut(s)	90
Bpu14I	TTCGAA	2 cut(s)	298, 508
BpuEI	CTTGAG	1 cut(s)	394
BpuMI	CCSGG	1 cut(s)	330
BsaBI	GATNNNNATC	1 cut(s)	672
BsaJI	CCNNGG	2 cut(s)	237, 329
Bsc4I	CCNNNNNNNGG	2 cut(s)	243, 329
Bse3DI	GCAATG	1 cut(s)	187
Bse8I	GATNNNNATC	1 cut(s)	672
BseBI	CCWGG	1 cut(s)	419
BseDI	CCNNGG	2 cut(s)	237, 329
BseGI	GGATG	3 cut(s)	105, 136, 358
BseJI	GATNNNNATC	1 cut(s)	672
BseLI	CCNNNNNNNGG	2 cut(s)	243, 329
BseMI	GCAATG	1 cut(s)	187
BseMII	CTCAG	1 cut(s)	221
BseRI	GAGGAG	1 cut(s)	399
BseSI	GKGCMC	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	420, 504
BshFI	GGCC	2 cut(s)	46, 417
BsiHKAI	GWGCWC	1 cut(s)	637
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	329
BslFI	GGGAC	2 cut(s)	346, 419
BslI	CCNNNNNNNGG	2 cut(s)	243, 329
BsmFI	GGGAC	2 cut(s)	346, 419
BsnI	GGCC	2 cut(s)	46, 417
BsoBI	CYCGRG	1 cut(s)	104
Bsp119I	TTCGAA	2 cut(s)	298, 508
Bsp120I	GGGCCC	1 cut(s)	44
Bsp1286I	GDGCHC	2 cut(s)	48, 637
Bsp19I	CCATGG	1 cut(s)	237
BspANI	GGCC	2 cut(s)	46, 417
BspCNI	CTCAG	1 cut(s)	220
BspLI	GGNNCC	3 cut(s)	45, 46, 235
BspQI	GCTCTTC	1 cut(s)	280
BspT104I	TTCGAA	2 cut(s)	298, 508
BsrDI	GCAATG	1 cut(s)	187
BssECI	CCNNGG	2 cut(s)	237, 329
BssT1I	CCWWGG	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	419
Bst6I	CTCTTC	1 cut(s)	280
BstAPI	GCANNNNNTGC	1 cut(s)	560
BstBI	TTCGAA	2 cut(s)	298, 508
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	2 cut(s)	207, 659
BstDSI	CCRYGG	1 cut(s)	237
BstF5I	GGATG	3 cut(s)	105, 136, 358
BstMWI	GCNNNNNNNGC	4 cut(s)	439, 466, 560, 593
BstNI	CCWGG	1 cut(s)	419
BstNSI	RCATGY	1 cut(s)	65
BstSCI	CCNGG	2 cut(s)	328, 417
BstSLI	GKGCMC	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	420, 504
BstXI	CCANNNNNNTGG	1 cut(s)	571
BsuRI	GGCC	2 cut(s)	46, 417
BtgI	CCRYGG	1 cut(s)	237
BtsCI	GGATG	3 cut(s)	105, 136, 358
BtsI	GCAGTG	2 cut(s)	576, 637
BtsIMutI	CAGTG	3 cut(s)	375, 576, 637
Cac8I	GCNNGC	1 cut(s)	15
Cfr13I	GGNCC	2 cut(s)	44, 45
CspCI	CAANNNNNGTGG	2 cut(s)	211, 246
CviAII	CATG	5 cut(s)	62, 151, 238, 448, 457
DdeI	CTNAG	2 cut(s)	207, 659
Eam1104I	CTCTTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	280
Eco130I	CCWWGG	1 cut(s)	237
Eco24I	GRGCYC	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	399
Eco88I	CYCGRG	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	417
EcoT14I	CCWWGG	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	5 cut(s)	65, 154, 241, 451, 460
FaqI	GGGAC	2 cut(s)	346, 419
FatI	CATG	5 cut(s)	61, 150, 237, 447, 456
Fnu4HI	GCNGC	2 cut(s)	434, 518
FokI	GGATG	3 cut(s)	112, 143, 365
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	2 cut(s)	434, 518
FspBI	CTAG	1 cut(s)	588
GluI	GCNGC	2 cut(s)	434, 518
HaeIII	GGCC	2 cut(s)	46, 417
HapII	CCGG	1 cut(s)	329
Hin1II	CATG	5 cut(s)	65, 154, 241, 451, 460
HindIII	AAGCTT	2 cut(s)	341, 594
HinfI	GANTC	4 cut(s)	118, 407, 534, 602
HpaII	CCGG	1 cut(s)	329
HphI	GGTGA	1 cut(s)	436
Hpy188I	TCNGA	1 cut(s)	210
Hpy188III	TCNNGA	3 cut(s)	404, 479, 638
HpyAV	CCTTC	1 cut(s)	374
HpyCH4V	TGCA	6 cut(s)	25, 180, 201, 469, 520, 569
HpyF10VI	GCNNNNNNNGC	4 cut(s)	439, 466, 560, 593
HpyF3I	CTNAG	2 cut(s)	207, 659
Hsp92II	CATG	5 cut(s)	65, 154, 241, 451, 460
LguI	GCTCTTC	1 cut(s)	280
LmnI	GCTCC	1 cut(s)	640
Lsp1109I	GCAGC	2 cut(s)	420, 504
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	1 cut(s)	588
MaeIII	GTNAC	3 cut(s)	289, 545, 662
MboII	GAAGA	2 cut(s)	184, 267
MhlI	GDGCHC	2 cut(s)	48, 637
MluCI	AATT	5 cut(s)	143, 175, 370, 482, 495
MlyI	GAGTC	1 cut(s)	401
MmeI	TCCRAC	1 cut(s)	370
MnlI	CCTC	4 cut(s)	200, 216, 377, 386
MseI	TTAA	5 cut(s)	54, 282, 338, 345, 685
MslI	CAYNNNNRTG	2 cut(s)	509, 651
MspI	CCGG	1 cut(s)	329
MspR9I	CCNGG	2 cut(s)	330, 419
MvaI	CCWGG	1 cut(s)	419
MwoI	GCNNNNNNNGC	4 cut(s)	439, 466, 560, 593
NciI	CCSGG	1 cut(s)	330
NcoI	CCATGG	1 cut(s)	237
NlaIII	CATG	5 cut(s)	65, 154, 241, 451, 460
NlaIV	GGNNCC	3 cut(s)	45, 46, 235
NmuCI	GTSAC	1 cut(s)	545
NspI	RCATGY	1 cut(s)	65
NspV	TTCGAA	2 cut(s)	298, 508
PaeR7I	CTCGAG	1 cut(s)	104
PciSI	GCTCTTC	1 cut(s)	280
PfeI	GAWTC	3 cut(s)	118, 534, 602
PflMI	CCANNNNNTGG	1 cut(s)	243
PkrI	GCNGC	2 cut(s)	435, 519
PleI	GAGTC	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	401
Psp6I	CCWGG	1 cut(s)	417
PspGI	CCWGG	1 cut(s)	417
PspN4I	GGNNCC	3 cut(s)	45, 46, 235
PspOMI	GGGCCC	1 cut(s)	44
PspPI	GGNCC	2 cut(s)	44, 45
PspXI	VCTCGAGB	1 cut(s)	104
RseI	CAYNNNNRTG	2 cut(s)	509, 651
SapI	GCTCTTC	1 cut(s)	280
SaqAI	TTAA	5 cut(s)	54, 282, 338, 345, 685
SatI	GCNGC	2 cut(s)	434, 518
Sau96I	GGNCC	2 cut(s)	44, 45
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	2 cut(s)	330, 419
SduI	GDGCHC	2 cut(s)	48, 637
SetI	ASST	8 cut(s)	208, 275, 289, 325, 345, 397, 589, 598
SfaNI	GCATC	1 cut(s)	90
Sfr274I	CTCGAG	1 cut(s)	104
SfuI	TTCGAA	2 cut(s)	298, 508
SlaI	CTCGAG	1 cut(s)	104
SmiMI	CAYNNNNRTG	2 cut(s)	509, 651
SmlI	CTYRAG	2 cut(s)	104, 409
SmoI	CTYRAG	2 cut(s)	104, 409
Sse9I	AATT	5 cut(s)	143, 175, 370, 482, 495
SspMI	CTAG	1 cut(s)	588
StyD4I	CCNGG	2 cut(s)	328, 417
StyI	CCWWGG	1 cut(s)	237
TaqI	TCGA	3 cut(s)	105, 298, 508
TasI	AATT	5 cut(s)	143, 175, 370, 482, 495
TfiI	GAWTC	3 cut(s)	118, 534, 602
Tru1I	TTAA	5 cut(s)	54, 282, 338, 345, 685
Tru9I	TTAA	5 cut(s)	54, 282, 338, 345, 685
TscAI	CASTG	3 cut(s)	382, 576, 637
TseFI	GTSAC	1 cut(s)	545
TseI	GCWGC	2 cut(s)	433, 517
Tsp45I	GTSAC	1 cut(s)	545
TspDTI	ATGAA	1 cut(s)	615
TspGWI	ACGGA	1 cut(s)	143
TspRI	CASTG	3 cut(s)	382, 576, 637
Van91I	CCANNNNNTGG	1 cut(s)	243
XapI	RAATTY	1 cut(s)	482
XceI	RCATGY	1 cut(s)	65
XhoI	CTCGAG	1 cut(s)	104
XspI	CTAG	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.