Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002843

Physical Location & Seq

Genomic Coordinates Reverse (-)

51682628 .. 51685290

Gene Structure 2663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G031540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGATACCATGCACTCCTTTTTCTAATCCACGCTATGGAAAGGCTTTTGTTATATTTAAGTCGTCAGATGATGCTGAATCTGCTATAGTTGAGTTAAATAGGAGATGCCTGACTCTGGCAGATGGGAGACCTGTCATCGGTACCATCTGCAGAGGGACTCTAAAAGTGCCTGACAAAACATCCAGATTTTATGGACATATGACGATCGACACACATCGGCTTAAAAGCCAACGTGAAGAGATGAGAAAAGCAGTATCAACGTCGCACTTTGCTCAGCCCAATACAGTTGAGTATGATATGGCAATGGACTGGTGTTTACTGCAGGAAAGGTCAGATTTGTGGTGGAAGGCTTTATATCAGGACCATGAGGGAAGAAATCCATTTCTTTTGTCAAATGTAGTTAACATTCTCCCCCGTGGAGCCCCCTCTGCAGGAAGAAGAGAAGGAGATAAAGAAGTTGGGAGAGCAAAAGGTCAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH RRM_1

Protein Analysis

160

Amino Acids

18.16

Weight (kDa)

9.16

Isoelectric Point (pI)

40.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15605 AT3G15605 AT3G15605 AT3G15605
fragaria_vesca	FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540
malus_domestica	MD09G1219000.v1.1
prunus_persica	Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1
pyrus_communis	pycom09g13690
rosa_chinensis	RchiOBHm_Chr2g0136961
rosa_laevigata	RLG00000019591
rosa_multiflora	Rmu_co8420089.1_g000001 Rmu_sc0001374.1_g000069
rosa_roxburghii	Rroxscaffold_2G00107840 Rroxscaffold_2G00107850
rosa_rugosa	Rorug02G0335700 Rorug02G0335800 Rorug02G0335900 Rorug02G0336000 Rorug02G0336100 Rorug02G0336200
rosa_samantha	Rh2AG385600 Rh2BG392600 Rh2CG372800 Rh2DG408700
rosa_wichuraiana	Rw2G031540 Rw2G031550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	140
AccB1I	GGYRCC	1 cut(s)	140
AccB7I	CCANNNNNTGG	1 cut(s)	35
AfaI	GTAC	1 cut(s)	142
AfiI	CCNNNNNNNGG	4 cut(s)	35, 115, 137, 431
Alw26I	GTCTC	1 cut(s)	121
Asp718I	GGTACC	1 cut(s)	140
AspS9I	GGNCC	1 cut(s)	361
AvaII	GGWCC	1 cut(s)	361
BanI	GGYRCC	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	424
BccI	CCATC	2 cut(s)	116, 152
BcoDI	GTCTC	1 cut(s)	121
BfmI	CTRYAG	4 cut(s)	84, 148, 320, 429
BlpI	GCTNAGC	1 cut(s)	273
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	361
BmiI	GGNNCC	2 cut(s)	142, 421
BmsI	GCATC	2 cut(s)	61, 95
Bpu1102I	GCTNAGC	1 cut(s)	273
BsaI	GGTCTC	1 cut(s)	121
BsaJI	CCNNGG	1 cut(s)	415
Bsc4I	CCNNNNNNNGG	4 cut(s)	35, 115, 137, 431
Bse1I	ACTGG	1 cut(s)	314
Bse3DI	GCAATG	1 cut(s)	309
BseDI	CCNNGG	1 cut(s)	415
BseGI	GGATG	1 cut(s)	179
BseLI	CCNNNNNNNGG	4 cut(s)	35, 115, 137, 431
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	1 cut(s)	287
BseNI	ACTGG	1 cut(s)	314
Bsh1285I	CGRYCG	1 cut(s)	207
BshNI	GGYRCC	1 cut(s)	140
BsiEI	CGRYCG	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	4 cut(s)	35, 115, 137, 431
BsmAI	GTCTC	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	169
Bso31I	GGTCTC	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	424
Bsp143I	GATC	1 cut(s)	204
Bsp1720I	GCTNAGC	1 cut(s)	273
BspCNI	CTCAG	1 cut(s)	286
BspLI	GGNNCC	2 cut(s)	142, 421
BspMAI	CTGCAG	3 cut(s)	152, 324, 433
BspT107I	GGYRCC	1 cut(s)	140
BspTNI	GGTCTC	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	314
BssECI	CCNNGG	1 cut(s)	415
BssMI	GATC	1 cut(s)	204
Bst4CI	ACNGT	1 cut(s)	286
Bst6I	CTCTTC	2 cut(s)	231, 433
BstDEI	CTNAG	1 cut(s)	273
BstDSI	CCRYGG	1 cut(s)	415
BstF5I	GGATG	1 cut(s)	179
BstKTI	GATC	1 cut(s)	207
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	204
BstMCI	CGRYCG	1 cut(s)	207
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 428
BstSFI	CTRYAG	4 cut(s)	84, 148, 320, 429
BtgI	CCRYGG	1 cut(s)	415
BtsCI	GGATG	1 cut(s)	179
Cfr13I	GGNCC	1 cut(s)	361
Csp6I	GTAC	1 cut(s)	141
CviAII	CATG	2 cut(s)	9, 365
CviJI	RGCY	6 cut(s)	44, 220, 228, 277, 350, 422
CviKI_1	RGCY	6 cut(s)	44, 220, 228, 277, 350, 422
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
Eam1104I	CTCTTC	2 cut(s)	231, 433
EarI	CTCTTC	2 cut(s)	231, 433
Eco24I	GRGCYC	1 cut(s)	424
Eco31I	GGTCTC	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	424
FaeI	CATG	2 cut(s)	12, 368
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	2 cut(s)	8, 364
FauNDI	CATATG	1 cut(s)	198
FokI	GGATG	1 cut(s)	166
FriOI	GRGCYC	1 cut(s)	424
Hin1II	CATG	2 cut(s)	12, 368
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HinfI	GANTC	3 cut(s)	77, 112, 157
HpaI	GTTAAC	1 cut(s)	403
Hpy166II	GTNNAC	2 cut(s)	317, 403
Hpy188I	TCNGA	2 cut(s)	67, 334
Hpy188III	TCNNGA	2 cut(s)	183, 359
Hpy8I	GTNNAC	2 cut(s)	317, 403
Hpy99I	CGWCG	1 cut(s)	265
HpyAV	CCTTC	2 cut(s)	340, 437
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4IV	ACGT	2 cut(s)	232, 260
HpyCH4V	TGCA	4 cut(s)	12, 150, 322, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 428
HpyF3I	CTNAG	1 cut(s)	273
HpySE526I	ACGT	2 cut(s)	232, 260
Hsp92II	CATG	2 cut(s)	12, 368
KpnI	GGTACC	1 cut(s)	144
KspAI	GTTAAC	1 cut(s)	403
Kzo9I	GATC	1 cut(s)	204
LmnI	GCTCC	1 cut(s)	419
LpnPI	CCDG	9 cut(s)	101, 122, 144, 183, 196, 295, 308, 344, 417
LweI	GCATC	2 cut(s)	61, 95
MaeII	ACGT	2 cut(s)	232, 260
MalI	GATC	1 cut(s)	206
MboI	GATC	1 cut(s)	204
MboII	GAAGA	4 cut(s)	248, 384, 447, 450
MhlI	GDGCHC	1 cut(s)	424
MlyI	GAGTC	2 cut(s)	106, 151
MnlI	CCTC	3 cut(s)	146, 361, 436
MseI	TTAA	5 cut(s)	57, 95, 222, 402, 481
MwoI	GCNNNNNNNGC	2 cut(s)	80, 428
NdeI	CATATG	1 cut(s)	198
NdeII	GATC	1 cut(s)	204
NlaIII	CATG	2 cut(s)	12, 368
NlaIV	GGNNCC	2 cut(s)	142, 421
PfeI	GAWTC	1 cut(s)	77
PflMI	CCANNNNNTGG	1 cut(s)	35
Ple19I	CGATCG	1 cut(s)	207
PleI	GAGTC	2 cut(s)	106, 151
PpsI	GAGTC	2 cut(s)	106, 151
PspN4I	GGNNCC	2 cut(s)	142, 421
PspPI	GGNCC	1 cut(s)	361
PstI	CTGCAG	3 cut(s)	152, 324, 433
PvuI	CGATCG	1 cut(s)	207
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
SaqAI	TTAA	5 cut(s)	57, 95, 222, 402, 481
Sau3AI	GATC	1 cut(s)	204
Sau96I	GGNCC	1 cut(s)	361
SchI	GAGTC	2 cut(s)	106, 151
SduI	GDGCHC	1 cut(s)	424
SetI	ASST	5 cut(s)	133, 235, 263, 332, 475
SfaNI	GCATC	2 cut(s)	61, 95
SfcI	CTRYAG	4 cut(s)	84, 148, 320, 429
SinI	GGWCC	1 cut(s)	361
TaaI	ACNGT	1 cut(s)	286
TaiI	ACGT	2 cut(s)	235, 263
TaqI	TCGA	1 cut(s)	207
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	5 cut(s)	57, 95, 222, 402, 481
Tru9I	TTAA	5 cut(s)	57, 95, 222, 402, 481
Van91I	CCANNNNNTGG	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.