Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001374.1

Orthogroup ID

OG0002843

Physical Location & Seq

Genomic Coordinates Forward (+)

224849 .. 229530

Gene Structure 4682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001374.1_g000069.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

atgttgcatcctgaaaagatgaatatggaacaagattctgaatttaagtggggtgaaagacttggagttggtaggacaaacaaggatgttcggttctaccggtctttcacatttcagggcgtggagtactccctgtatgattccgtacacctctacaagactggcgctttggaaacagatattggtaagattatcaaaatttattccacagcaactgaaaagaaggttaggattgtgtggtttcttcggccagctgaaatatgcaactttttgggtgattatcaaccacactggaaagagatttttttagcttctggcgagggtacaggcctctccaatctgaatcctctggaagcaattgttggaaagtgtaatgttgtctgcgtatcagaggatacaaggaatcctcgtccctctaaagaagagttcagaacggccaactactttttccatagtacatttgacgttgacaggcgcaaaatattgcagaagtttccagatcaaatatatggaattaaagtggagaaatattttaacaggcgaaaacagcaaagcctcaccaggatggaccaagctggaccatcaaatgtgccttccaattcacaattggacaaagtggtggcatatccagttaaaaatggcaagcctagtagtaaatcaatccgtatagtcaaagaatcggagagtcggcgtccagaagcaagaccatcaagtgtgccttccaattcacaattaagcaaagtggtgttgtgtccactcctgaatgttaaaggaaatacagtggaccctttactaccacctgtgagcacaccagatacccgtccttataagaagatgaaaactgcagatagtagaccgccagatattgataagagtggttggttcaagccagcattttgggaggaaagactgcggacagctgaaggtaatggcaccttggtcctgctagacaatctagatccatcctttacatcctccgaagtacagggtctagtttgggctgcattcaagcagatggttgaggcaaaaatgataccatgcactcctttttctaatccacgctatggaaaggcttttgttatatttaagtcgtcagatgatgctgaatctgctatagttgagttaaataggagatgcctgactctggcagatgggaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH RRM_1

Protein Analysis

386

Amino Acids

43.87

Weight (kDa)

9.28

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15605 AT3G15605 AT3G15605 AT3G15605
fragaria_vesca	FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540
malus_domestica	MD09G1219000.v1.1
prunus_persica	Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1
pyrus_communis	pycom09g13690
rosa_chinensis	RchiOBHm_Chr2g0136961
rosa_laevigata	RLG00000019591
rosa_multiflora	Rmu_co8420089.1_g000001 Rmu_sc0001374.1_g000069
rosa_roxburghii	Rroxscaffold_2G00107840 Rroxscaffold_2G00107850
rosa_rugosa	Rorug02G0335700 Rorug02G0335800 Rorug02G0335900 Rorug02G0336000 Rorug02G0336100 Rorug02G0336200
rosa_samantha	Rh2AG385600 Rh2BG392600 Rh2CG372800 Rh2DG408700
rosa_wichuraiana	Rw2G031540 Rw2G031550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	828
AccB1I	GGYRCC	1 cut(s)	932
AccB7I	CCANNNNNTGG	1 cut(s)	1064
AccI	GTMKAC	1 cut(s)	853
AciI	CCGC	2 cut(s)	857, 913
AclWI	GGATC	1 cut(s)	953
AcoI	YGGCCR	2 cut(s)	248, 435
AcsI	RAATTY	2 cut(s)	41, 198
AcuI	CTGAAG	1 cut(s)	942
AcyI	GRCGYC	1 cut(s)	691
AfaI	GTAC	5 cut(s)	128, 147, 325, 457, 984
AfiI	CCNNNNNNNGG	2 cut(s)	1064, 1144
AgeI	ACCGGT	1 cut(s)	99
AgsI	TTSAA	2 cut(s)	886, 1009
AjnI	CCWGG	1 cut(s)	560
AjuI	GAANNNNNNNTTGG	6 cut(s)	165, 197, 345, 377, 431, 463
AloI	GAACNNNNNNTCC	2 cut(s)	77, 109
AluBI	AGCT	4 cut(s)	254, 311, 575, 920
AluI	AGCT	4 cut(s)	254, 311, 575, 920
Alw21I	GWGCWC	1 cut(s)	809
AlwI	GGATC	1 cut(s)	953
AlwNI	CAGNNNCTG	1 cut(s)	215
AoxI	GGCC	3 cut(s)	248, 328, 435
ApeKI	GCWGC	1 cut(s)	1001
ApoI	RAATTY	2 cut(s)	41, 198
ArsI	GACNNNNNNTTYG	2 cut(s)	151, 183
AsiGI	ACCGGT	1 cut(s)	99
AspLEI	GCGC	2 cut(s)	167, 477
AspS9I	GGNCC	4 cut(s)	568, 578, 784, 940
AsuHPI	GGTGA	3 cut(s)	65, 287, 550
AvaII	GGWCC	4 cut(s)	568, 578, 784, 940
BanI	GGYRCC	1 cut(s)	932
Bbv12I	GWGCWC	1 cut(s)	809
BbvI	GCAGC	1 cut(s)	988
BccI	CCATC	6 cut(s)	559, 589, 715, 970, 1009, 1145
BceAI	ACGGC	1 cut(s)	450
BciT130I	CCWGG	1 cut(s)	562
BciVI	GTATCC	1 cut(s)	388
BfaI	CTAG	4 cut(s)	648, 947, 956, 992
BfmI	CTRYAG	2 cut(s)	843, 1113
BfoI	RGCGCY	1 cut(s)	168
BfuI	GTATCC	1 cut(s)	388
BisI	GCNGC	1 cut(s)	1002
BlsI	GCNGC	1 cut(s)	1003
BmcAI	AGTACT	1 cut(s)	128
Bme1390I	CCNGG	1 cut(s)	562
Bme18I	GGWCC	4 cut(s)	568, 578, 784, 940
BmgT120I	GGNCC	4 cut(s)	568, 578, 784, 940
BmiI	GGNNCC	2 cut(s)	786, 934
BmrFI	CCNGG	1 cut(s)	562
BmsI	GCATC	3 cut(s)	16, 1090, 1124
BsaHI	GRCGYC	1 cut(s)	691
BsaJI	CCNNGG	1 cut(s)	936
BsaWI	WCCGGW	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	2 cut(s)	1064, 1144
Bse118I	RCCGGY	1 cut(s)	99
Bse1I	ACTGG	3 cut(s)	166, 296, 629
BseBI	CCWGG	1 cut(s)	562
BseDI	CCNNGG	1 cut(s)	936
BseGI	GGATG	5 cut(s)	7, 91, 570, 962, 971
BseLI	CCNNNNNNNGG	2 cut(s)	1064, 1144
BseNI	ACTGG	3 cut(s)	166, 296, 629
BseXI	GCAGC	1 cut(s)	988
BshFI	GGCC	3 cut(s)	250, 330, 437
BshNI	GGYRCC	1 cut(s)	932
BshTI	ACCGGT	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	809
BsiSI	CCGG	1 cut(s)	100
BslFI	GGGAC	1 cut(s)	396
BslI	CCNNNNNNNGG	2 cut(s)	1064, 1144
BsmFI	GGGAC	1 cut(s)	396
BsmI	GAATGC	1 cut(s)	1004
BsnI	GGCC	3 cut(s)	250, 330, 437
Bsp1286I	GDGCHC	1 cut(s)	809
Bsp143I	GATC	2 cut(s)	499, 958
BspACI	CCGC	2 cut(s)	857, 913
BspANI	GGCC	3 cut(s)	250, 330, 437
BspLI	GGNNCC	2 cut(s)	786, 934
BspMAI	CTGCAG	1 cut(s)	847
BspPI	GGATC	1 cut(s)	953
BspT107I	GGYRCC	1 cut(s)	932
BsrFI	RCCGGY	1 cut(s)	99
BsrI	ACTGG	3 cut(s)	166, 296, 629
BssAI	RCCGGY	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	936
BssMI	GATC	2 cut(s)	499, 958
BssNI	GRCGYC	1 cut(s)	691
BssT1I	CCWWGG	1 cut(s)	936
Bst2UI	CCWGG	1 cut(s)	562
Bst4CI	ACNGT	1 cut(s)	781
Bst6I	CTCTTC	1 cut(s)	417
BstACI	GRCGYC	1 cut(s)	691
BstC8I	GCNNGC	3 cut(s)	252, 644, 891
BstF5I	GGATG	5 cut(s)	7, 91, 570, 962, 971
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	2 cut(s)	167, 477
BstKTI	GATC	2 cut(s)	502, 961
BstMBI	GATC	2 cut(s)	499, 958
BstMWI	GCNNNNNNNGC	2 cut(s)	547, 1109
BstNI	CCWGG	1 cut(s)	562
BstSCI	CCNGG	1 cut(s)	560
BstSFI	CTRYAG	2 cut(s)	843, 1113
BstV1I	GCAGC	1 cut(s)	988
BstX2I	RGATCY	1 cut(s)	958
BstXI	CCANNNNNNTGG	1 cut(s)	897
BstYI	RGATCY	1 cut(s)	958
BsuI	GTATCC	1 cut(s)	388
BsuRI	GGCC	3 cut(s)	250, 330, 437
BtsCI	GGATG	5 cut(s)	7, 91, 570, 962, 971
BtsIMutI	CAGTG	2 cut(s)	289, 786
Cac8I	GCNNGC	3 cut(s)	252, 644, 891
CaiI	CAGNNNCTG	1 cut(s)	215
CfoI	GCGC	2 cut(s)	167, 477
Cfr10I	RCCGGY	1 cut(s)	99
Cfr13I	GGNCC	4 cut(s)	568, 578, 784, 940
CseI	GACGC	1 cut(s)	680
Csp6I	GTAC	5 cut(s)	127, 146, 324, 456, 983
CspAI	ACCGGT	1 cut(s)	99
CviAII	CATG	1 cut(s)	1038
CviQI	GTAC	5 cut(s)	127, 146, 324, 456, 983
DpnI	GATC	2 cut(s)	501, 960
DpnII	GATC	2 cut(s)	499, 958
EaeI	YGGCCR	2 cut(s)	248, 435
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
Eco130I	CCWWGG	1 cut(s)	936
Eco147I	AGGCCT	1 cut(s)	330
Eco47I	GGWCC	4 cut(s)	568, 578, 784, 940
Eco57I	CTGAAG	1 cut(s)	942
EcoRII	CCWGG	1 cut(s)	560
EcoT14I	CCWWGG	1 cut(s)	936
ErhI	CCWWGG	1 cut(s)	936
FaeI	CATG	1 cut(s)	1041
FalI	AAGNNNNNCTT	2 cut(s)	703, 735
FaqI	GGGAC	1 cut(s)	396
FatI	CATG	1 cut(s)	1037
FblI	GTMKAC	1 cut(s)	853
Fnu4HI	GCNGC	1 cut(s)	1002
FokI	GGATG	4 cut(s)	98, 577, 949, 958
Fsp4HI	GCNGC	1 cut(s)	1002
FspBI	CTAG	4 cut(s)	648, 947, 956, 992
GlaI	GCGC	2 cut(s)	166, 476
GluI	GCNGC	1 cut(s)	1002
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	3 cut(s)	250, 330, 437
HapII	CCGG	1 cut(s)	100
HgaI	GACGC	1 cut(s)	680
HhaI	GCGC	2 cut(s)	167, 477
Hin1I	GRCGYC	1 cut(s)	691
Hin1II	CATG	1 cut(s)	1041
Hin6I	GCGC	2 cut(s)	165, 475
HinP1I	GCGC	2 cut(s)	165, 475
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HinfI	GANTC	8 cut(s)	35, 140, 343, 403, 677, 685, 1106, 1141
HpaII	CCGG	1 cut(s)	100
HphI	GGTGA	3 cut(s)	65, 287, 550
Hpy166II	GTNNAC	5 cut(s)	148, 469, 755, 784, 854
Hpy188I	TCNGA	7 cut(s)	40, 342, 391, 431, 682, 979, 1096
Hpy188III	TCNNGA	6 cut(s)	11, 350, 497, 695, 760, 956
Hpy8I	GTNNAC	5 cut(s)	148, 469, 755, 784, 854
HpyAV	CCTTC	4 cut(s)	217, 603, 729, 917
HpyCH4III	ACNGT	1 cut(s)	781
HpyCH4IV	ACGT	1 cut(s)	465
HpyCH4V	TGCA	6 cut(s)	7, 264, 487, 845, 1004, 1041
HpyF10VI	GCNNNNNNNGC	2 cut(s)	547, 1109
HpySE526I	ACGT	1 cut(s)	465
Hsp92I	GRCGYC	1 cut(s)	691
Hsp92II	CATG	1 cut(s)	1041
HspAI	GCGC	2 cut(s)	165, 475
Kzo9I	GATC	2 cut(s)	499, 958
Lsp1109I	GCAGC	1 cut(s)	988
LweI	GCATC	3 cut(s)	16, 1090, 1124
MaeI	CTAG	4 cut(s)	648, 947, 956, 992
MaeII	ACGT	1 cut(s)	465
MalI	GATC	2 cut(s)	501, 960
MboI	GATC	2 cut(s)	499, 958
MboII	GAAGA	3 cut(s)	236, 434, 844
MfeI	CAATTG	2 cut(s)	357, 605
MflI	RGATCY	1 cut(s)	958
MhlI	GDGCHC	1 cut(s)	809
MluCI	AATT	8 cut(s)	41, 198, 357, 513, 598, 605, 724, 731
MlyI	GAGTC	2 cut(s)	694, 1135
MmeI	TCCRAC	1 cut(s)	343
MseI	TTAA	8 cut(s)	45, 516, 534, 633, 734, 768, 1086, 1124
MslI	CAYNNNNRTG	1 cut(s)	563
MspA1I	CMGCKG	2 cut(s)	254, 920
MspI	CCGG	1 cut(s)	100
MspR9I	CCNGG	1 cut(s)	562
MunI	CAATTG	2 cut(s)	357, 605
Mva1269I	GAATGC	1 cut(s)	1004
MvaI	CCWGG	1 cut(s)	562
MwoI	GCNNNNNNNGC	2 cut(s)	547, 1109
NdeII	GATC	2 cut(s)	499, 958
NlaIII	CATG	1 cut(s)	1041
NlaIV	GGNNCC	2 cut(s)	786, 934
PceI	AGGCCT	1 cut(s)	330
PctI	GAATGC	1 cut(s)	1004
PfeI	GAWTC	6 cut(s)	35, 140, 343, 403, 677, 1106
PflMI	CCANNNNNTGG	1 cut(s)	1064
PinAI	ACCGGT	1 cut(s)	99
PkrI	GCNGC	1 cut(s)	1003
PleI	GAGTC	2 cut(s)	693, 1135
PpsI	GAGTC	2 cut(s)	693, 1135
PsiI	TTATAA	1 cut(s)	828
Psp6I	CCWGG	1 cut(s)	560
PspGI	CCWGG	1 cut(s)	560
PspN4I	GGNNCC	2 cut(s)	786, 934
PspPI	GGNCC	4 cut(s)	568, 578, 784, 940
PstI	CTGCAG	1 cut(s)	847
PstNI	CAGNNNCTG	1 cut(s)	215
PsuI	RGATCY	1 cut(s)	958
PvuII	CAGCTG	2 cut(s)	254, 920
RsaI	GTAC	5 cut(s)	128, 147, 325, 457, 984
RsaNI	GTAC	5 cut(s)	127, 146, 324, 456, 983
RseI	CAYNNNNRTG	1 cut(s)	563
SaqAI	TTAA	8 cut(s)	45, 516, 534, 633, 734, 768, 1086, 1124
SatI	GCNGC	1 cut(s)	1002
Sau3AI	GATC	2 cut(s)	499, 958
Sau96I	GGNCC	4 cut(s)	568, 578, 784, 940
ScaI	AGTACT	1 cut(s)	128
SchI	GAGTC	2 cut(s)	694, 1135
ScrFI	CCNGG	1 cut(s)	562
SduI	GDGCHC	1 cut(s)	809
SfaNI	GCATC	3 cut(s)	16, 1090, 1124
SfcI	CTRYAG	2 cut(s)	843, 1113
SinI	GGWCC	4 cut(s)	568, 578, 784, 940
SmiMI	CAYNNNNRTG	1 cut(s)	563
Sse9I	AATT	8 cut(s)	41, 198, 357, 513, 598, 605, 724, 731
SseBI	AGGCCT	1 cut(s)	330
SsiI	CCGC	2 cut(s)	857, 913
SspI	AATATT	2 cut(s)	483, 530
SspMI	CTAG	4 cut(s)	648, 947, 956, 992
StuI	AGGCCT	1 cut(s)	330
StyD4I	CCNGG	1 cut(s)	560
StyI	CCWWGG	1 cut(s)	936
TaaI	ACNGT	1 cut(s)	781
TaiI	ACGT	1 cut(s)	468
TasI	AATT	8 cut(s)	41, 198, 357, 513, 598, 605, 724, 731
TatI	WGTACW	3 cut(s)	126, 455, 982
TfiI	GAWTC	6 cut(s)	35, 140, 343, 403, 677, 1106
Tru1I	TTAA	8 cut(s)	45, 516, 534, 633, 734, 768, 1086, 1124
Tru9I	TTAA	8 cut(s)	45, 516, 534, 633, 734, 768, 1086, 1124
TscAI	CASTG	2 cut(s)	296, 786
TseI	GCWGC	1 cut(s)	1001
TspDTI	ATGAA	2 cut(s)	35, 851
TspGWI	ACGGA	2 cut(s)	133, 653
TspRI	CASTG	2 cut(s)	296, 786
Van91I	CCANNNNNTGG	1 cut(s)	1064
VpaK11BI	GGWCC	4 cut(s)	568, 578, 784, 940
XapI	RAATTY	2 cut(s)	41, 198
XbaI	TCTAGA	1 cut(s)	955
XcmI	CCANNNNNNNNNTGG	1 cut(s)	604
XmiI	GTMKAC	1 cut(s)	853
XspI	CTAG	4 cut(s)	648, 947, 956, 992
ZrmI	AGTACT	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.