MD09G1219000.v1.1

BAH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0002843
Physical Location & Seq
Forward (+)
22335074 .. 22352820
17747 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1219000.v1.1.491

Sequence Viewer

Length: 1506 bp
ATGGAACGAAATCTTCAGTTTAAGTGGGGTGAGAAAGCTGGAGATCGGAATAACAGAGGTTCCCAGTTCTATTTGTCGTTCACGATGGAAGGCGTTGAGTACTTGCTTTATGACAGTGTATATCTTTATCATGCTGGTTCTCTTGAGACCTATATTGGTAAGCTGGTGTCAATATTTGAAACAGAGACCCATGAGAAGAAGGTAAGGGTCCTGTGGTTTTTCCGTCCTGCTGAGATATGCAACTTCCTTGGTGATTACGAACCACACTGGAATGAGCTATTTTTAGGTTCCGGTGAGGGTAAAGGCCTCTCCAATATCAATCCTCTGGAAGCAATTGCTGGAAAATGCAATGTTGTCTGCACATCAAAGGACGACAGGAATCGTCAGCCATCTAAAGAAGAGTTGAGAACGGCTAATTACTTCTTCTGTCGTACATTTGATGTTGGAAAGTGTGAAATATTGGAGATTTTTCCCGATGAAATAAGGGGACTTACAGTGGAGAGATATTTTAACAAGAGAAACAATGAAAAGCTCCTCAGGATTCCCAAGTTCCAGACAAATTTGAAAGATCCAGCTGGACAGTCAATGGTGTCTTCCAAGTTAGGTTCGGCCAAGTTGATGCCCTCTCCGGTTAAAATTGACAAGTCTAGCAGCAGAATAAACCCTGTAGTGAGAGAATCGGAAGTGCCAACGGTTTGTAGTGGTGCGCGGGCATATGCTTCAAATGAGACATTAAGACTTCAACCTGGATTTGATGGATTTGCAACTCAGTCTGCTAGAATATCACATAATCAAGAGAAAGAAAAACGCAAAACAATATTTTTAGATCAACCACCTCAACCACCTATGGCTGCATCAGATACCCGTCCTTCCAAGAAGATGAGAGTTCCAGTTGGTGTAGATTCAACTAAGGGGGAAAATTCTGGAAAGAAGGCAGATGTTGATAGAGCAAGGTGGTTCAAGCAACTGCCTTGGGAGGAAAGACTGCAGATAGCTCAAGATGCAGGCCAATTGGTCTTACTAGACAATCTTGAGCCGTCCTATTCATCATCAGAAGTAGAGGGTCTAGTTTGGCAAGCATTTGGAGAAAAGGTTGAGGCAAAAATGTTACAATACAGTATTCATCCTACTCCAAACTATGGCAAGGCTTTTGTCATATTCAAGTCGAGTGTTGCTGCTGAATCTGCAATAAATAAATTAAAGGAGGGATGCCTTGTTGCGGACAAGAGACCTATCATTGGTATCAGAAGAACTCTTAAAGTGCCTGACAAAGCAGCGAGATTTGTTGGACATCTGAGCATTCCCAAACTCAGGTTTCACAGTCAGCGTGAAGAAATGAGAAAGGCAGTATCAACATCACACTGTTCTCAGCCCAATACAATCGAGTATGACATGGCCATGGAATGGTGTCTTCTGCAGCAAAAGTCAGATTTATGGTGGGACGCTTTATACAAGCCCCTTCTCTGCAGGAACATGAAAAGGAGACTGGAGACGGTATTACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH RRM_1

Protein Analysis

502

Amino Acids

57.22

Weight (kDa)

9.11

Isoelectric Point (pI)

47.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 38 - 145 6.6e-12 BAH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 1139, 1404
AccII CGCG 1 cut(s) 709
AciI CCGC 2 cut(s) 709, 1220
AclWI GGATC 1 cut(s) 563
AcoI YGGCCR 2 cut(s) 609, 1395
AcsI RAATTY 2 cut(s) 559, 919
AfaI GTAC 2 cut(s) 101, 433
AfiI CCNNNNNNNGG 5 cut(s) 1139, 1219, 1238, 1311, 1404
AgsI TTSAA 7 cut(s) 179, 565, 723, 743, 906, 961, 1162
AjnI CCWGG 1 cut(s) 745
AluBI AGCT 6 cut(s) 38, 163, 277, 532, 575, 995
AluI AGCT 6 cut(s) 38, 163, 277, 532, 575, 995
Alw26I GTCTC 6 cut(s) 140, 179, 722, 1222, 1477, 1484
AlwI GGATC 1 cut(s) 563
AoxI GGCC 4 cut(s) 304, 609, 1006, 1395
ApeKI GCWGC 5 cut(s) 651, 851, 1175, 1274, 1417
ApoI RAATTY 2 cut(s) 559, 919
AspLEI GCGC 1 cut(s) 709
AspS9I GGNCC 1 cut(s) 208
AsuHPI GGTGA 3 cut(s) 41, 263, 305
AvaII GGWCC 1 cut(s) 208
AxyI CCTNAGG 1 cut(s) 536
BalI TGGCCA 1 cut(s) 1397
BbsI GAAGAC 2 cut(s) 585, 1403
BbvI GCAGC 5 cut(s) 663, 838, 1162, 1286, 1429
BccI CCATC 3 cut(s) 79, 397, 749
BceAI ACGGC 2 cut(s) 426, 1021
BciT130I CCWGG 1 cut(s) 747
BcoDI GTCTC 6 cut(s) 140, 179, 722, 1222, 1477, 1484
BfaI CTAG 4 cut(s) 648, 777, 1022, 1067
BfmI CTRYAG 4 cut(s) 666, 986, 1415, 1465
BisI GCNGC 5 cut(s) 652, 852, 1176, 1275, 1418
BlsI GCNGC 5 cut(s) 653, 853, 1177, 1276, 1419
BmcAI AGTACT 1 cut(s) 101
Bme1390I CCNGG 1 cut(s) 747
Bme18I GGWCC 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 3 cut(s) 61, 209, 289
BmrFI CCNGG 1 cut(s) 747
BmrI ACTGGG 1 cut(s) 58
BmsI GCATC 4 cut(s) 609, 863, 991, 1199
BmuI ACTGGG 1 cut(s) 58
BpiI GAAGAC 2 cut(s) 585, 1403
BpmI CTGGAG 1 cut(s) 60
BpuEI CTTGAG 3 cut(s) 164, 981, 1052
BsaI GGTCTC 3 cut(s) 140, 179, 1222
BsaJI CCNNGG 3 cut(s) 247, 971, 1398
BsaWI WCCGGW 2 cut(s) 290, 628
BsaXI ACNNNNNCTCC 2 cut(s) 1077, 1107
Bsc4I CCNNNNNNNGG 5 cut(s) 1139, 1219, 1238, 1311, 1404
Bse1I ACTGG 4 cut(s) 64, 272, 890, 1491
Bse21I CCTNAGG 1 cut(s) 536
Bse3DI GCAATG 1 cut(s) 355
BseBI CCWGG 1 cut(s) 747
BseDI CCNNGG 3 cut(s) 247, 971, 1398
BseGI GGATG 2 cut(s) 1123, 1214
BseLI CCNNNNNNNGG 5 cut(s) 1139, 1219, 1238, 1311, 1404
BseMI GCAATG 1 cut(s) 355
BseMII CTCAG 6 cut(s) 222, 550, 782, 1286, 1324, 1382
BseNI ACTGG 4 cut(s) 64, 272, 890, 1491
BseRI GAGGAG 1 cut(s) 524
BseXI GCAGC 5 cut(s) 663, 838, 1162, 1286, 1429
BsgI GTGCAG 1 cut(s) 343
Bsh1236I CGCG 1 cut(s) 709
BshFI GGCC 4 cut(s) 306, 611, 1008, 1397
BsiSI CCGG 2 cut(s) 291, 629
BslFI GGGAC 2 cut(s) 501, 1454
BslI CCNNNNNNNGG 5 cut(s) 1139, 1219, 1238, 1311, 1404
BsmAI GTCTC 6 cut(s) 140, 179, 722, 1222, 1477, 1484
BsmBI CGTCTC 1 cut(s) 1484
BsmFI GGGAC 2 cut(s) 501, 1454
BsmI GAATGC 1 cut(s) 1299
BsnI GGCC 4 cut(s) 306, 611, 1008, 1397
Bso31I GGTCTC 3 cut(s) 140, 179, 1222
Bsp143I GATC 3 cut(s) 43, 568, 826
Bsp19I CCATGG 1 cut(s) 1398
BspACI CCGC 2 cut(s) 709, 1220
BspANI GGCC 4 cut(s) 306, 611, 1008, 1397
BspCNI CTCAG 6 cut(s) 223, 549, 781, 1287, 1323, 1381
BspFNI CGCG 1 cut(s) 709
BspLI GGNNCC 3 cut(s) 61, 209, 289
BspMAI CTGCAG 3 cut(s) 990, 1419, 1469
BspPI GGATC 1 cut(s) 563
BspTNI GGTCTC 3 cut(s) 140, 179, 1222
BsrDI GCAATG 1 cut(s) 355
BsrI ACTGG 4 cut(s) 64, 272, 890, 1491
BssECI CCNNGG 3 cut(s) 247, 971, 1398
BssMI GATC 3 cut(s) 43, 568, 826
BssT1I CCWWGG 3 cut(s) 247, 971, 1398
Bst2UI CCWGG 1 cut(s) 747
Bst4CI ACNGT 9 cut(s) 116, 496, 582, 694, 1118, 1322, 1364, 1495, 1503
Bst6I CTCTTC 1 cut(s) 393
BstC8I GCNNGC 3 cut(s) 711, 1006, 1077
BstDEI CTNAG 7 cut(s) 231, 536, 768, 909, 1295, 1310, 1368
BstDSI CCRYGG 1 cut(s) 1398
BstF5I GGATG 2 cut(s) 1123, 1214
BstFNI CGCG 1 cut(s) 709
BstHHI GCGC 1 cut(s) 709
BstKTI GATC 3 cut(s) 46, 571, 829
BstMAI GTCTC 6 cut(s) 140, 179, 722, 1222, 1477, 1484
BstMBI GATC 3 cut(s) 43, 568, 826
BstMWI GCNNNNNNNGC 2 cut(s) 1001, 1184
BstNI CCWGG 1 cut(s) 747
BstSCI CCNGG 1 cut(s) 745
BstSFI CTRYAG 4 cut(s) 666, 986, 1415, 1465
BstUI CGCG 1 cut(s) 709
BstV1I GCAGC 5 cut(s) 663, 838, 1162, 1286, 1429
BstV2I GAAGAC 2 cut(s) 585, 1403
BstX2I RGATCY 1 cut(s) 568
BstYI RGATCY 1 cut(s) 568
Bsu36I CCTNAGG 1 cut(s) 536
BsuRI GGCC 4 cut(s) 306, 611, 1008, 1397
BtgI CCRYGG 1 cut(s) 1398
BtsCI GGATG 2 cut(s) 1123, 1214
BtsIMutI CAGTG 4 cut(s) 121, 265, 501, 1360
Cac8I GCNNGC 3 cut(s) 711, 1006, 1077
CfoI GCGC 1 cut(s) 709
Cfr13I GGNCC 1 cut(s) 208
CseI GACGC 1 cut(s) 1451
Csp6I GTAC 2 cut(s) 100, 432
CviAII CATG 5 cut(s) 131, 191, 1393, 1399, 1474
CviQI GTAC 2 cut(s) 100, 432
DdeI CTNAG 7 cut(s) 231, 536, 768, 909, 1295, 1310, 1368
DpnI GATC 3 cut(s) 45, 570, 828
DpnII GATC 3 cut(s) 43, 568, 826
EaeI YGGCCR 2 cut(s) 609, 1395
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
Eco130I CCWWGG 3 cut(s) 247, 971, 1398
Eco147I AGGCCT 1 cut(s) 306
Eco31I GGTCTC 3 cut(s) 140, 179, 1222
Eco47I GGWCC 1 cut(s) 208
Eco81I CCTNAGG 1 cut(s) 536
EcoO109I RGGNCCY 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 745
EcoT14I CCWWGG 3 cut(s) 247, 971, 1398
ErhI CCWWGG 3 cut(s) 247, 971, 1398
Esp3I CGTCTC 1 cut(s) 1484
FaeI CATG 5 cut(s) 134, 194, 1396, 1402, 1477
FaqI GGGAC 2 cut(s) 501, 1454
FatI CATG 5 cut(s) 130, 190, 1392, 1398, 1473
FauI CCCGC 1 cut(s) 702
FauNDI CATATG 1 cut(s) 715
Fnu4HI GCNGC 5 cut(s) 652, 852, 1176, 1275, 1418
FokI GGATG 2 cut(s) 1110, 1221
Fsp4HI GCNGC 5 cut(s) 652, 852, 1176, 1275, 1418
FspBI CTAG 4 cut(s) 648, 777, 1022, 1067
GlaI GCGC 1 cut(s) 708
GluI GCNGC 5 cut(s) 652, 852, 1176, 1275, 1418
GsuI CTGGAG 1 cut(s) 60
HaeIII GGCC 4 cut(s) 306, 611, 1008, 1397
HapII CCGG 2 cut(s) 291, 629
HgaI GACGC 1 cut(s) 1451
HhaI GCGC 1 cut(s) 709
Hin1II CATG 5 cut(s) 134, 194, 1396, 1402, 1477
Hin6I GCGC 1 cut(s) 707
HinP1I GCGC 1 cut(s) 707
HinfI GANTC 5 cut(s) 379, 541, 677, 902, 1181
HpaII CCGG 2 cut(s) 291, 629
HphI GGTGA 3 cut(s) 41, 263, 305
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 7 cut(s) 48, 682, 859, 1054, 1247, 1296, 1429
Hpy8I GTNNAC 1 cut(s) 81
HpyAV CCTTC 5 cut(s) 83, 193, 879, 925, 1469
HpyCH4III ACNGT 9 cut(s) 116, 496, 582, 694, 1118, 1322, 1364, 1495, 1503
HpyF10VI GCNNNNNNNGC 2 cut(s) 1001, 1184
HpyF3I CTNAG 7 cut(s) 231, 536, 768, 909, 1295, 1310, 1368
Hsp92II CATG 5 cut(s) 134, 194, 1396, 1402, 1477
HspAI GCGC 1 cut(s) 707
Kzo9I GATC 3 cut(s) 43, 568, 826
LmnI GCTCC 1 cut(s) 537
Lsp1109I GCAGC 5 cut(s) 663, 838, 1162, 1286, 1429
LweI GCATC 4 cut(s) 609, 863, 991, 1199
MaeI CTAG 4 cut(s) 648, 777, 1022, 1067
MaeIII GTNAC 1 cut(s) 1107
MalI GATC 3 cut(s) 45, 570, 828
MboI GATC 3 cut(s) 43, 568, 826
MboII GAAGA 9 cut(s) 5, 208, 410, 415, 585, 889, 1260, 1343, 1403
MfeI CAATTG 2 cut(s) 333, 1010
MflI RGATCY 1 cut(s) 568
MlsI TGGCCA 1 cut(s) 1397
MluCI AATT 7 cut(s) 333, 415, 559, 636, 919, 1010, 1196
MluNI TGGCCA 1 cut(s) 1397
MmeI TCCRAC 2 cut(s) 424, 1267
Mox20I TGGCCA 1 cut(s) 1397
MscI TGGCCA 1 cut(s) 1397
MseI TTAA 6 cut(s) 21, 510, 633, 734, 1199, 1257
MslI CAYNNNNRTG 2 cut(s) 270, 1397
Msp20I TGGCCA 1 cut(s) 1397
MspA1I CMGCKG 1 cut(s) 575
MspI CCGG 2 cut(s) 291, 629
MspR9I CCNGG 1 cut(s) 747
MunI CAATTG 2 cut(s) 333, 1010
Mva1269I GAATGC 1 cut(s) 1299
MvaI CCWGG 1 cut(s) 747
MvnI CGCG 1 cut(s) 709
MwoI GCNNNNNNNGC 2 cut(s) 1001, 1184
NcoI CCATGG 1 cut(s) 1398
NdeI CATATG 1 cut(s) 715
NdeII GATC 3 cut(s) 43, 568, 826
NlaIII CATG 5 cut(s) 134, 194, 1396, 1402, 1477
NlaIV GGNNCC 3 cut(s) 61, 209, 289
PceI AGGCCT 1 cut(s) 306
PctI GAATGC 1 cut(s) 1299
PfeI GAWTC 5 cut(s) 379, 541, 677, 902, 1181
PflMI CCANNNNNTGG 2 cut(s) 1139, 1404
PkrI GCNGC 5 cut(s) 653, 853, 1177, 1276, 1419
PpuMI RGGWCCY 1 cut(s) 208
Psp5II RGGWCCY 1 cut(s) 208
Psp6I CCWGG 1 cut(s) 745
PspGI CCWGG 1 cut(s) 745
PspN4I GGNNCC 3 cut(s) 61, 209, 289
PspPI GGNCC 1 cut(s) 208
PspPPI RGGWCCY 1 cut(s) 208
PstI CTGCAG 3 cut(s) 990, 1419, 1469
PsuI RGATCY 1 cut(s) 568
PvuII CAGCTG 1 cut(s) 575
RsaI GTAC 2 cut(s) 101, 433
RsaNI GTAC 2 cut(s) 100, 432
RseI CAYNNNNRTG 2 cut(s) 270, 1397
SaqAI TTAA 6 cut(s) 21, 510, 633, 734, 1199, 1257
SatI GCNGC 5 cut(s) 652, 852, 1176, 1275, 1418
Sau3AI GATC 3 cut(s) 43, 568, 826
Sau96I GGNCC 1 cut(s) 208
ScaI AGTACT 1 cut(s) 101
ScrFI CCNGG 1 cut(s) 747
SfaNI GCATC 4 cut(s) 609, 863, 991, 1199
SfcI CTRYAG 4 cut(s) 666, 986, 1415, 1465
SinI GGWCC 1 cut(s) 208
SmiMI CAYNNNNRTG 2 cut(s) 270, 1397
SmlI CTYRAG 3 cut(s) 143, 996, 1031
SmoI CTYRAG 3 cut(s) 143, 996, 1031
Sse9I AATT 7 cut(s) 333, 415, 559, 636, 919, 1010, 1196
SseBI AGGCCT 1 cut(s) 306
SsiI CCGC 2 cut(s) 709, 1220
SspI AATATT 3 cut(s) 174, 459, 819
SspMI CTAG 4 cut(s) 648, 777, 1022, 1067
StuI AGGCCT 1 cut(s) 306
StyD4I CCNGG 1 cut(s) 745
StyI CCWWGG 3 cut(s) 247, 971, 1398
TaaI ACNGT 9 cut(s) 116, 496, 582, 694, 1118, 1322, 1364, 1495, 1503
TaqI TCGA 2 cut(s) 1166, 1383
TasI AATT 7 cut(s) 333, 415, 559, 636, 919, 1010, 1196
TatI WGTACW 1 cut(s) 99
TfiI GAWTC 5 cut(s) 379, 541, 677, 902, 1181
Tru1I TTAA 6 cut(s) 21, 510, 633, 734, 1199, 1257
Tru9I TTAA 6 cut(s) 21, 510, 633, 734, 1199, 1257
TscAI CASTG 4 cut(s) 121, 272, 501, 1367
TseI GCWGC 5 cut(s) 651, 851, 1175, 1274, 1417
TspDTI ATGAA 5 cut(s) 492, 540, 1035, 1112, 1490
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 4 cut(s) 121, 272, 501, 1367
Van91I CCANNNNNTGG 2 cut(s) 1139, 1404
VpaK11BI GGWCC 1 cut(s) 208
XapI RAATTY 2 cut(s) 559, 919
XspI CTAG 4 cut(s) 648, 777, 1022, 1067
ZrmI AGTACT 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.