FvH4_6g30540

BAH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002843
Physical Location & Seq
Reverse (-)
23648961 .. 23658530
9570 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g30540.t9

Sequence Viewer

Length: 1452 bp
ATGAATATGGGGCAAGATTCTGACTTTAAATGGGGTGAAACAGCTAAAGTTCAGAGTAAAAACAAGGATATCCAGTTCTACCAGTCTTTCACTTTTCATGGTGTTGAGTACTCCCTGTATGATTGTGTATACCTTTACCAGACTGGCGCTTTAGAAACATATATTGGTAAAATTATCAGAATATGTTCCACAAAGAAGGTTAAGGTTGTGTGGTTATTTCGGCCAGCTGAAATATGCGACTTTTTGGGTGATTATGATCCGCAGTGGAATGAGATATTCTTAGCTTCTGGCAAAGGTACAGGCGTCTCCAATGTGAATCCTCTGGAAGCAATTGTTGGAAAGTGTAATGTCGTCTGCCTTTCAAAGAATCCGAGAAATCCTCGACCCTCTGAAGAAGAGTTGAGAATGGCCAACTATATTTTCCGTCGTACTTTTGATGTTGACACGCACAAAATATTACCGAAGTTTCCGGATCAAATATGTGGGATTAAAGTGGAGGAATATTTTAACAGGCCAAAACAGCAAAGCCGCAGCAGGATTCCCAGAGACCAAGCTGGACCATCAAACGTGTCTTCTAATTCTCATTTAAAAAATGTGGTGGCATATTCTGTTAAGAATGGAAAGCCTAGTGGCAAATCAACTCCTATAGTGAAAGAATCGAAGAATTGGGCTCTTCCCGAAATGAGAGACCAAGCTGGACCATCAAATGTGCCTTCTACTTCACAACAGGACAAAGTGGTGTCATGTCCAGTCATGAATGTTAAAAAAAATGCAGTAGACCCTCTTCTACCACCTGCGAGCCCACCAGATACTCATCCTCATAAGAAGATGAAAACTGCAGATAGTAGACTGCCGGAGATTGATAGGAGTGGTTGGTTCAAGACAGGATTGTGGGAGGAAAGATTGCGGGCAGCTGAAGGTAATGGCACCTTGGTCCTGCTACACAATTTAGATCCATCTACTGCTTCCTCTGAAGTACAGCATCTAGTTTGGACTGCATTCAAGCTGAAGGTTGATGCCAAAATGATAGCATGCACTCCTTTTTCTAATCCACGCTATGGGAAGGCTTTTGTCATATTCAAGTCATCAGATGATGCTAAGTCTGCTATATTTCAATTAAATAGGAGATGCCTTCTGGCGGATGGGAGACCTCTCATTGGTACCATCTGCAAAGGGGCTCTAAAAGACCAAGACAAAACATCCAGGTTTTTTGGACATCTCACAATTGACAAACATCGGTTTAAAAGCCAACGTGAAGAGATGAGAAAGGCAGTATCGACATCGCACTTTGCTCAGCCCAATACAGTTGAGTATGATATGGCAATGGACTGGTGTTTATTGCAGGCAAAGTCAGATTTGTGGTGGAAGGCTTTATATCAGGACCATGAGGAAAAAGAGAAAGAGATAAAGAAGTTGGGAGAGAGCAAAAGGTCAAGAAGTTTAATCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH RRM_1

Protein Analysis

484

Amino Acids

54.86

Weight (kDa)

9.29

Isoelectric Point (pI)

44.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 36 - 150 4.4e-07 BAH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 802
Acc36I ACCTGC 1 cut(s) 802
Acc65I GGTACC 1 cut(s) 1160
AccB1I GGYRCC 2 cut(s) 926, 1160
AccB7I CCANNNNNTGG 1 cut(s) 1058
AccI GTMKAC 3 cut(s) 129, 777, 847
AccIII TCCGGA 1 cut(s) 469
AciI CCGC 4 cut(s) 260, 529, 907, 1139
AclWI GGATC 3 cut(s) 251, 480, 947
AcoI YGGCCR 2 cut(s) 221, 408
AcuI CTGAAG 4 cut(s) 411, 936, 993, 1028
AcyI GRCGYC 1 cut(s) 303
AfaI GTAC 5 cut(s) 110, 298, 430, 978, 1162
AfiI CCNNNNNNNGG 3 cut(s) 1058, 1138, 1157
AflIII ACRYGT 1 cut(s) 567
AgsI TTSAA 5 cut(s) 363, 880, 1003, 1081, 1115
AjnI CCWGG 1 cut(s) 1202
AjuI GAANNNNNNNTTGG 6 cut(s) 147, 179, 318, 350, 404, 436
AloI GAACNNNNNNTCC 2 cut(s) 59, 91
AluBI AGCT 7 cut(s) 44, 227, 284, 554, 695, 914, 1006
AluI AGCT 7 cut(s) 44, 227, 284, 554, 695, 914, 1006
Alw26I GTCTC 4 cut(s) 310, 540, 681, 1141
AlwI GGATC 3 cut(s) 251, 480, 947
Aor13HI TCCGGA 1 cut(s) 469
AoxI GGCC 3 cut(s) 221, 408, 512
ApeKI GCWGC 2 cut(s) 531, 911
Asp700I GAANNNNTTC 1 cut(s) 184
Asp718I GGTACC 1 cut(s) 1160
AspLEI GCGC 1 cut(s) 149
AspS9I GGNCC 4 cut(s) 557, 698, 934, 1381
AsuHPI GGTGA 2 cut(s) 47, 260
AvaII GGWCC 4 cut(s) 557, 698, 934, 1381
BaeI ACNNNNGTAYC 2 cut(s) 288, 321
BalI TGGCCA 1 cut(s) 410
BanI GGYRCC 2 cut(s) 926, 1160
BanII GRGCYC 3 cut(s) 673, 803, 1180
BarI GAAGNNNNNNTAC 2 cut(s) 768, 800
BbsI GAAGAC 1 cut(s) 564
BbvI GCAGC 2 cut(s) 543, 923
BccI CCATC 5 cut(s) 568, 709, 964, 1136, 1172
BciT130I CCWGG 1 cut(s) 1204
BcoDI GTCTC 4 cut(s) 310, 540, 681, 1141
BfaI CTAG 2 cut(s) 627, 986
BfmI CTRYAG 2 cut(s) 645, 837
BfoI RGCGCY 1 cut(s) 150
BfuAI ACCTGC 1 cut(s) 802
BisI GCNGC 3 cut(s) 529, 532, 912
BlpI GCTNAGC 1 cut(s) 1293
BlsI GCNGC 3 cut(s) 530, 533, 913
BmcAI AGTACT 1 cut(s) 110
Bme1390I CCNGG 1 cut(s) 1204
Bme18I GGWCC 4 cut(s) 557, 698, 934, 1381
BmgT120I GGNCC 4 cut(s) 557, 698, 934, 1381
BmiI GGNNCC 2 cut(s) 928, 1162
BmrFI CCNGG 1 cut(s) 1204
BmsI GCATC 4 cut(s) 991, 1006, 1084, 1118
BpiI GAAGAC 1 cut(s) 564
BplI GAGNNNNNCTC 2 cut(s) 364, 396
Bpu1102I GCTNAGC 1 cut(s) 1293
BsaBI GATNNNNATC 2 cut(s) 255, 813
BsaHI GRCGYC 1 cut(s) 303
BsaI GGTCTC 3 cut(s) 540, 681, 1141
BsaJI CCNNGG 1 cut(s) 930
BsaWI WCCGGW 1 cut(s) 469
Bsc4I CCNNNNNNNGG 3 cut(s) 1058, 1138, 1157
Bse1I ACTGG 5 cut(s) 73, 82, 148, 749, 1334
Bse3DI GCAATG 1 cut(s) 1329
Bse8I GATNNNNATC 2 cut(s) 255, 813
BseAI TCCGGA 1 cut(s) 469
BseBI CCWGG 1 cut(s) 1204
BseDI CCNNGG 1 cut(s) 930
BseGI GGATG 3 cut(s) 814, 1147, 1199
BseJI GATNNNNATC 2 cut(s) 255, 813
BseLI CCNNNNNNNGG 3 cut(s) 1058, 1138, 1157
BseMI GCAATG 1 cut(s) 1329
BseMII CTCAG 1 cut(s) 1307
BseNI ACTGG 5 cut(s) 73, 82, 148, 749, 1334
BseXI GCAGC 2 cut(s) 543, 923
BshFI GGCC 3 cut(s) 223, 410, 514
BshNI GGYRCC 2 cut(s) 926, 1160
BsiSI CCGG 2 cut(s) 470, 854
BslI CCNNNNNNNGG 3 cut(s) 1058, 1138, 1157
BsmAI GTCTC 4 cut(s) 310, 540, 681, 1141
BsmBI CGTCTC 1 cut(s) 310
BsmI GAATGC 1 cut(s) 998
BsnI GGCC 3 cut(s) 223, 410, 514
Bso31I GGTCTC 3 cut(s) 540, 681, 1141
Bsp1286I GDGCHC 3 cut(s) 673, 803, 1180
Bsp13I TCCGGA 1 cut(s) 469
Bsp143I GATC 3 cut(s) 256, 472, 952
Bsp1720I GCTNAGC 1 cut(s) 1293
BspACI CCGC 4 cut(s) 260, 529, 907, 1139
BspANI GGCC 3 cut(s) 223, 410, 514
BspCNI CTCAG 1 cut(s) 1306
BspEI TCCGGA 1 cut(s) 469
BspHI TCATGA 1 cut(s) 753
BspLI GGNNCC 2 cut(s) 928, 1162
BspMAI CTGCAG 1 cut(s) 841
BspMI ACCTGC 1 cut(s) 802
BspPI GGATC 3 cut(s) 251, 480, 947
BspQI GCTCTTC 1 cut(s) 678
BspT107I GGYRCC 2 cut(s) 926, 1160
BspTNI GGTCTC 3 cut(s) 540, 681, 1141
BsrDI GCAATG 1 cut(s) 1329
BsrI ACTGG 5 cut(s) 73, 82, 148, 749, 1334
BssECI CCNNGG 1 cut(s) 930
BssMI GATC 3 cut(s) 256, 472, 952
BssNAI GTATAC 1 cut(s) 130
BssNI GRCGYC 1 cut(s) 303
BssT1I CCWWGG 1 cut(s) 930
Bst1107I GTATAC 1 cut(s) 130
Bst2UI CCWGG 1 cut(s) 1204
Bst4CI ACNGT 1 cut(s) 1306
Bst6I CTCTTC 4 cut(s) 390, 678, 789, 1251
BstACI GRCGYC 1 cut(s) 303
BstC8I GCNNGC 5 cut(s) 225, 799, 909, 1033, 1344
BstDEI CTNAG 3 cut(s) 280, 1098, 1293
BstF5I GGATG 3 cut(s) 814, 1147, 1199
BstH2I RGCGCY 1 cut(s) 150
BstHHI GCGC 1 cut(s) 149
BstKTI GATC 3 cut(s) 259, 475, 955
BstMAI GTCTC 4 cut(s) 310, 540, 681, 1141
BstMBI GATC 3 cut(s) 256, 472, 952
BstMWI GCNNNNNNNGC 2 cut(s) 520, 1103
BstNI CCWGG 1 cut(s) 1204
BstNSI RCATGY 1 cut(s) 1035
BstSCI CCNGG 1 cut(s) 1202
BstSFI CTRYAG 2 cut(s) 645, 837
BstV1I GCAGC 2 cut(s) 543, 923
BstV2I GAAGAC 1 cut(s) 564
BstX2I RGATCY 1 cut(s) 952
BstYI RGATCY 1 cut(s) 952
BstZ17I GTATAC 1 cut(s) 130
BsuRI GGCC 3 cut(s) 223, 410, 514
BtgZI GCGATG 1 cut(s) 1266
BtsCI GGATG 3 cut(s) 814, 1147, 1199
BtsI GCAGTG 1 cut(s) 269
BtsIMutI CAGTG 1 cut(s) 269
BveI ACCTGC 1 cut(s) 802
Cac8I GCNNGC 5 cut(s) 225, 799, 909, 1033, 1344
CciI TCATGA 1 cut(s) 753
CfoI GCGC 1 cut(s) 149
Cfr13I GGNCC 4 cut(s) 557, 698, 934, 1381
CseI GACGC 1 cut(s) 292
Csp6I GTAC 5 cut(s) 109, 297, 429, 977, 1161
CviAII CATG 5 cut(s) 98, 744, 754, 1032, 1385
CviQI GTAC 5 cut(s) 109, 297, 429, 977, 1161
DdeI CTNAG 3 cut(s) 280, 1098, 1293
DpnI GATC 3 cut(s) 258, 474, 954
DpnII GATC 3 cut(s) 256, 472, 952
DraI TTTAAA 3 cut(s) 28, 588, 1243
EaeI YGGCCR 2 cut(s) 221, 408
Eam1104I CTCTTC 4 cut(s) 390, 678, 789, 1251
EarI CTCTTC 4 cut(s) 390, 678, 789, 1251
EciI GGCGGA 1 cut(s) 1154
Eco130I CCWWGG 1 cut(s) 930
Eco24I GRGCYC 3 cut(s) 673, 803, 1180
Eco31I GGTCTC 3 cut(s) 540, 681, 1141
Eco32I GATATC 1 cut(s) 70
Eco47I GGWCC 4 cut(s) 557, 698, 934, 1381
Eco57I CTGAAG 4 cut(s) 411, 936, 993, 1028
EcoRII CCWGG 1 cut(s) 1202
EcoRV GATATC 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 930
EcoT38I GRGCYC 3 cut(s) 673, 803, 1180
ErhI CCWWGG 1 cut(s) 930
Esp3I CGTCTC 1 cut(s) 310
FaeI CATG 5 cut(s) 101, 747, 757, 1035, 1388
FatI CATG 5 cut(s) 97, 743, 753, 1031, 1384
FauI CCCGC 1 cut(s) 900
FblI GTMKAC 3 cut(s) 129, 777, 847
Fnu4HI GCNGC 3 cut(s) 529, 532, 912
FokI GGATG 3 cut(s) 801, 1154, 1186
FriOI GRGCYC 3 cut(s) 673, 803, 1180
Fsp4HI GCNGC 3 cut(s) 529, 532, 912
FspBI CTAG 2 cut(s) 627, 986
GlaI GCGC 1 cut(s) 148
GluI GCNGC 3 cut(s) 529, 532, 912
HaeII RGCGCY 1 cut(s) 150
HaeIII GGCC 3 cut(s) 223, 410, 514
HapII CCGG 2 cut(s) 470, 854
HgaI GACGC 1 cut(s) 292
HhaI GCGC 1 cut(s) 149
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 5 cut(s) 101, 747, 757, 1035, 1388
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HinfI GANTC 5 cut(s) 17, 316, 367, 538, 656
HpaII CCGG 2 cut(s) 470, 854
HphI GGTGA 2 cut(s) 47, 260
Hpy166II GTNNAC 4 cut(s) 130, 442, 778, 848
Hpy188I TCNGA 8 cut(s) 22, 54, 179, 372, 391, 973, 1090, 1354
Hpy188III TCNNGA 7 cut(s) 323, 470, 677, 754, 880, 1379, 1434
Hpy8I GTNNAC 4 cut(s) 130, 442, 778, 848
Hpy99I CGWCG 1 cut(s) 429
HpyAV CCTTC 7 cut(s) 190, 723, 911, 1003, 1057, 1142, 1360
HpyCH4III ACNGT 1 cut(s) 1306
HpyCH4IV ACGT 2 cut(s) 567, 1252
HpyCH4V TGCA 6 cut(s) 773, 839, 998, 1035, 1170, 1342
HpyF10VI GCNNNNNNNGC 2 cut(s) 520, 1103
HpyF3I CTNAG 3 cut(s) 280, 1098, 1293
HpySE526I ACGT 2 cut(s) 567, 1252
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 5 cut(s) 101, 747, 757, 1035, 1388
HspAI GCGC 1 cut(s) 147
Kpn2I TCCGGA 1 cut(s) 469
KpnI GGTACC 1 cut(s) 1164
Kzo9I GATC 3 cut(s) 256, 472, 952
LguI GCTCTTC 1 cut(s) 678
Lsp1109I GCAGC 2 cut(s) 543, 923
LweI GCATC 4 cut(s) 991, 1006, 1084, 1118
MaeI CTAG 2 cut(s) 627, 986
MaeII ACGT 2 cut(s) 567, 1252
MalI GATC 3 cut(s) 258, 474, 954
MboI GATC 3 cut(s) 256, 472, 952
MboII GAAGA 8 cut(s) 404, 407, 564, 665, 673, 776, 838, 1268
MfeI CAATTG 2 cut(s) 330, 1224
MflI RGATCY 1 cut(s) 952
MhlI GDGCHC 3 cut(s) 673, 803, 1180
MlsI TGGCCA 1 cut(s) 410
MluCI AATT 7 cut(s) 171, 330, 577, 664, 946, 1115, 1224
MluNI TGGCCA 1 cut(s) 410
MmeI TCCRAC 1 cut(s) 316
Mox20I TGGCCA 1 cut(s) 410
MroI TCCGGA 1 cut(s) 469
MroXI GAANNNNTTC 1 cut(s) 184
MscI TGGCCA 1 cut(s) 410
Msp20I TGGCCA 1 cut(s) 410
MspA1I CMGCKG 2 cut(s) 227, 914
MspI CCGG 2 cut(s) 470, 854
MspR9I CCNGG 1 cut(s) 1204
MunI CAATTG 2 cut(s) 330, 1224
Mva1269I GAATGC 1 cut(s) 998
MvaI CCWGG 1 cut(s) 1204
MwoI GCNNNNNNNGC 2 cut(s) 520, 1103
NdeII GATC 3 cut(s) 256, 472, 952
NlaIII CATG 5 cut(s) 101, 747, 757, 1035, 1388
NlaIV GGNNCC 2 cut(s) 928, 1162
NspI RCATGY 1 cut(s) 1035
PaeI GCATGC 1 cut(s) 1035
PagI TCATGA 1 cut(s) 753
PaqCI CACCTGC 1 cut(s) 802
PciSI GCTCTTC 1 cut(s) 678
PctI GAATGC 1 cut(s) 998
PdmI GAANNNNTTC 1 cut(s) 184
PfeI GAWTC 5 cut(s) 17, 316, 367, 538, 656
PflMI CCANNNNNTGG 1 cut(s) 1058
PkrI GCNGC 3 cut(s) 530, 533, 913
Psp6I CCWGG 1 cut(s) 1202
PspGI CCWGG 1 cut(s) 1202
PspN4I GGNNCC 2 cut(s) 928, 1162
PspPI GGNCC 4 cut(s) 557, 698, 934, 1381
PstI CTGCAG 1 cut(s) 841
PsuI RGATCY 1 cut(s) 952
PvuII CAGCTG 2 cut(s) 227, 914
RsaI GTAC 5 cut(s) 110, 298, 430, 978, 1162
RsaNI GTAC 5 cut(s) 109, 297, 429, 977, 1161
SapI GCTCTTC 1 cut(s) 678
SatI GCNGC 3 cut(s) 529, 532, 912
Sau3AI GATC 3 cut(s) 256, 472, 952
Sau96I GGNCC 4 cut(s) 557, 698, 934, 1381
ScaI AGTACT 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 1204
SduI GDGCHC 3 cut(s) 673, 803, 1180
SfaNI GCATC 4 cut(s) 991, 1006, 1084, 1118
SfcI CTRYAG 2 cut(s) 645, 837
SinI GGWCC 4 cut(s) 557, 698, 934, 1381
SphI GCATGC 1 cut(s) 1035
Sse9I AATT 7 cut(s) 171, 330, 577, 664, 946, 1115, 1224
SsiI CCGC 4 cut(s) 260, 529, 907, 1139
SspI AATATT 2 cut(s) 456, 503
SspMI CTAG 2 cut(s) 627, 986
StyD4I CCNGG 1 cut(s) 1202
StyI CCWWGG 1 cut(s) 930
TaaI ACNGT 1 cut(s) 1306
TaiI ACGT 2 cut(s) 570, 1255
TaqI TCGA 3 cut(s) 382, 659, 1277
TasI AATT 7 cut(s) 171, 330, 577, 664, 946, 1115, 1224
TatI WGTACW 2 cut(s) 108, 976
TauI GCSGC 1 cut(s) 531
TfiI GAWTC 5 cut(s) 17, 316, 367, 538, 656
TscAI CASTG 1 cut(s) 269
TseI GCWGC 2 cut(s) 531, 911
TspDTI ATGAA 4 cut(s) 17, 86, 770, 845
TspGWI ACGGA 1 cut(s) 413
TspRI CASTG 1 cut(s) 269
Van91I CCANNNNNTGG 1 cut(s) 1058
VpaK11BI GGWCC 4 cut(s) 557, 698, 934, 1381
XceI RCATGY 1 cut(s) 1035
XmiI GTMKAC 3 cut(s) 129, 777, 847
XmnI GAANNNNTTC 1 cut(s) 184
XspI CTAG 2 cut(s) 627, 986
ZrmI AGTACT 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.