Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0002843

Physical Location & Seq

Genomic Coordinates Forward (+)

12667281 .. 12670363

Gene Structure 3083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g13690.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGAACAAAATCTTCAGTTTAAGTGGGGTGAGAAAGCTGGAGATCGGAATAACAGAGGTTCCCAGTTCTATTTGTCATTCACGATGGAAGGTGCTGAGTACTTCCTTTATGACAGCGTATATCTTTATCATGCTGGTTCTCTTGAGACCTATATTGGTAAGCTGGTGTCAATATTTGAAACAGAGACCCATGAGAAGAAGGTAAGGGTCCTGTGGTTTTTCCGTCCTGCTGAGATATGCAACTTCCTTGGTGATTACAAACCACACTGGAATGAGCTATTTTTAGGTTCGGGTGAGGGTAAAGGCCTCTCCAATATCAATCCTCTGGAAGCAATTGCTGGAAAATGCAATGTTGTCTGCACATCAAAGGACGACAGGAATCGTCAGCCCTCTAAAGAAGAGTTGAGAACGGCTAATTACTTCTTCTGTCGTACATTTGATGTTGGAAAGTGTGAAATATTGGAGAATTTTCCTGATGAAATAAGGGGACTTACAGTGGAGAGATATTTTAACAAGAGAAACAATGAAAAGCTCCTCAGGATTCCCAAGTTCCAGACAAATTTGAAAGATCCAGCTGGACAGTCAATGGTGTCTTCCAAGTTAGAATCGGAAGTGCCAACAGTTCGTAGTGGTGCGTGGGCATATGCTTCAAATGAGACATTAAGACTTCAACCTGGATTTGATGGATTTGCAACTCAGTCTGCTAGAATATCACATAATCAAGAGAAAGAAAAACGCAAAACAATAATTTTAGATCAACCACCTCGACCACCTATGGCTGCATCTGATACCCGTCCTTCCAAGAAGACGAGAGTTCCAGTTGGTGTAGATTCAACCAAGGGGGAAAATTCTGGAAAGAAGGCAGATGTTGTAAGTTTAGTGTTTTCAGCTTTATTTTTCTTCTCTTTCCTGATTTTTTTCTTTTCGTGGCACTACTCATTTTTAAACTCATACAATTTGATATATGCTTTTGATTTTACTATGTTTTCATTTGTGGCTTCCTATATTCAGTTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH RRM_1

Protein Analysis

340

Amino Acids

39.01

Weight (kDa)

8.63

Isoelectric Point (pI)

39.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15605 AT3G15605 AT3G15605 AT3G15605
fragaria_vesca	FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540
malus_domestica	MD09G1219000.v1.1
prunus_persica	Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1
pyrus_communis	pycom09g13690
rosa_chinensis	RchiOBHm_Chr2g0136961
rosa_laevigata	RLG00000019591
rosa_multiflora	Rmu_co8420089.1_g000001 Rmu_sc0001374.1_g000069
rosa_roxburghii	Rroxscaffold_2G00107840 Rroxscaffold_2G00107850
rosa_rugosa	Rorug02G0335700 Rorug02G0335800 Rorug02G0335900 Rorug02G0336000 Rorug02G0336100 Rorug02G0336200
rosa_samantha	Rh2AG385600 Rh2BG392600 Rh2CG372800 Rh2DG408700
rosa_wichuraiana	Rw2G031540 Rw2G031550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	563
AcsI	RAATTY	3 cut(s)	466, 559, 847
AfaI	GTAC	2 cut(s)	101, 433
AgsI	TTSAA	5 cut(s)	179, 565, 651, 671, 834
AjnI	CCWGG	1 cut(s)	673
AluBI	AGCT	6 cut(s)	38, 163, 277, 532, 575, 890
AluI	AGCT	6 cut(s)	38, 163, 277, 532, 575, 890
Alw26I	GTCTC	3 cut(s)	140, 179, 650
AlwI	GGATC	1 cut(s)	563
AoxI	GGCC	1 cut(s)	304
ApeKI	GCWGC	1 cut(s)	779
ApoI	RAATTY	3 cut(s)	466, 559, 847
AspS9I	GGNCC	1 cut(s)	208
AsuHPI	GGTGA	3 cut(s)	41, 263, 305
AvaII	GGWCC	1 cut(s)	208
AxyI	CCTNAGG	1 cut(s)	536
BbsI	GAAGAC	2 cut(s)	585, 812
BbvI	GCAGC	1 cut(s)	766
BccI	CCATC	2 cut(s)	79, 677
BceAI	ACGGC	1 cut(s)	426
BciT130I	CCWGG	1 cut(s)	675
BcoDI	GTCTC	3 cut(s)	140, 179, 650
BfaI	CTAG	1 cut(s)	705
BisI	GCNGC	1 cut(s)	780
BlsI	GCNGC	1 cut(s)	781
BmcAI	AGTACT	1 cut(s)	101
Bme1390I	CCNGG	1 cut(s)	675
Bme18I	GGWCC	1 cut(s)	208
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	2 cut(s)	61, 209
BmrFI	CCNGG	1 cut(s)	675
BmrI	ACTGGG	1 cut(s)	58
BmsI	GCATC	1 cut(s)	791
BmuI	ACTGGG	1 cut(s)	58
BpiI	GAAGAC	2 cut(s)	585, 812
BpmI	CTGGAG	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	164
BsaI	GGTCTC	2 cut(s)	140, 179
BsaJI	CCNNGG	2 cut(s)	247, 837
Bse1I	ACTGG	3 cut(s)	64, 272, 818
Bse21I	CCTNAGG	1 cut(s)	536
Bse3DI	GCAATG	1 cut(s)	355
BseBI	CCWGG	1 cut(s)	675
BseDI	CCNNGG	2 cut(s)	247, 837
BseMI	GCAATG	1 cut(s)	355
BseMII	CTCAG	4 cut(s)	87, 222, 550, 710
BseNI	ACTGG	3 cut(s)	64, 272, 818
BseRI	GAGGAG	1 cut(s)	524
BseXI	GCAGC	1 cut(s)	766
BsgI	GTGCAG	1 cut(s)	343
BshFI	GGCC	1 cut(s)	306
BslFI	GGGAC	1 cut(s)	501
BsmAI	GTCTC	3 cut(s)	140, 179, 650
BsmFI	GGGAC	1 cut(s)	501
BsnI	GGCC	1 cut(s)	306
Bso31I	GGTCTC	2 cut(s)	140, 179
Bsp143I	GATC	3 cut(s)	43, 568, 754
BspANI	GGCC	1 cut(s)	306
BspCNI	CTCAG	4 cut(s)	88, 223, 549, 709
BspLI	GGNNCC	2 cut(s)	61, 209
BspPI	GGATC	1 cut(s)	563
BspTNI	GGTCTC	2 cut(s)	140, 179
BsrDI	GCAATG	1 cut(s)	355
BsrI	ACTGG	3 cut(s)	64, 272, 818
BssECI	CCNNGG	2 cut(s)	247, 837
BssMI	GATC	3 cut(s)	43, 568, 754
BssT1I	CCWWGG	2 cut(s)	247, 837
Bst2UI	CCWGG	1 cut(s)	675
Bst4CI	ACNGT	3 cut(s)	496, 582, 622
Bst6I	CTCTTC	1 cut(s)	393
BstDEI	CTNAG	4 cut(s)	96, 231, 536, 696
BstKTI	GATC	3 cut(s)	46, 571, 757
BstMAI	GTCTC	3 cut(s)	140, 179, 650
BstMBI	GATC	3 cut(s)	43, 568, 754
BstNI	CCWGG	1 cut(s)	675
BstSCI	CCNGG	1 cut(s)	673
BstV1I	GCAGC	1 cut(s)	766
BstV2I	GAAGAC	2 cut(s)	585, 812
BstX2I	RGATCY	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	568
Bsu36I	CCTNAGG	1 cut(s)	536
BsuRI	GGCC	1 cut(s)	306
BtsIMutI	CAGTG	2 cut(s)	265, 501
Cfr13I	GGNCC	1 cut(s)	208
Csp6I	GTAC	2 cut(s)	100, 432
CviAII	CATG	2 cut(s)	131, 191
CviQI	GTAC	2 cut(s)	100, 432
DdeI	CTNAG	4 cut(s)	96, 231, 536, 696
DpnI	GATC	3 cut(s)	45, 570, 756
DpnII	GATC	3 cut(s)	43, 568, 754
DraI	TTTAAA	1 cut(s)	945
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
Eco130I	CCWWGG	2 cut(s)	247, 837
Eco147I	AGGCCT	1 cut(s)	306
Eco31I	GGTCTC	2 cut(s)	140, 179
Eco47I	GGWCC	1 cut(s)	208
Eco81I	CCTNAGG	1 cut(s)	536
EcoO109I	RGGNCCY	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	673
EcoT14I	CCWWGG	2 cut(s)	247, 837
ErhI	CCWWGG	2 cut(s)	247, 837
FaeI	CATG	2 cut(s)	134, 194
FaqI	GGGAC	1 cut(s)	501
FatI	CATG	2 cut(s)	130, 190
FauNDI	CATATG	1 cut(s)	643
Fnu4HI	GCNGC	1 cut(s)	780
Fsp4HI	GCNGC	1 cut(s)	780
FspBI	CTAG	1 cut(s)	705
GluI	GCNGC	1 cut(s)	780
GsuI	CTGGAG	1 cut(s)	60
HaeIII	GGCC	1 cut(s)	306
Hin1II	CATG	2 cut(s)	134, 194
HinfI	GANTC	4 cut(s)	379, 541, 605, 830
HphI	GGTGA	3 cut(s)	41, 263, 305
Hpy188I	TCNGA	3 cut(s)	48, 610, 787
Hpy188III	TCNNGA	9 cut(s)	82, 143, 326, 473, 538, 553, 722, 852, 910
HpyAV	CCTTC	4 cut(s)	83, 193, 807, 853
HpyCH4III	ACNGT	3 cut(s)	496, 582, 622
HpyCH4V	TGCA	5 cut(s)	240, 348, 360, 692, 782
HpyF3I	CTNAG	4 cut(s)	96, 231, 536, 696
Hsp92II	CATG	2 cut(s)	134, 194
Kzo9I	GATC	3 cut(s)	43, 568, 754
LmnI	GCTCC	1 cut(s)	537
Lsp1109I	GCAGC	1 cut(s)	766
LweI	GCATC	1 cut(s)	791
MaeI	CTAG	1 cut(s)	705
MalI	GATC	3 cut(s)	45, 570, 756
MboI	GATC	3 cut(s)	43, 568, 754
MboII	GAAGA	7 cut(s)	5, 208, 410, 415, 585, 817, 892
MfeI	CAATTG	1 cut(s)	333
MflI	RGATCY	1 cut(s)	568
MluCI	AATT	7 cut(s)	333, 415, 466, 559, 747, 847, 955
MmeI	TCCRAC	1 cut(s)	424
MnlI	CCTC	7 cut(s)	50, 289, 317, 333, 400, 545, 774
MseI	TTAA	5 cut(s)	21, 510, 662, 944, 1018
MslI	CAYNNNNRTG	1 cut(s)	270
MspA1I	CMGCKG	1 cut(s)	575
MspR9I	CCNGG	1 cut(s)	675
MunI	CAATTG	1 cut(s)	333
MvaI	CCWGG	1 cut(s)	675
NdeI	CATATG	1 cut(s)	643
NdeII	GATC	3 cut(s)	43, 568, 754
NlaIII	CATG	2 cut(s)	134, 194
NlaIV	GGNNCC	2 cut(s)	61, 209
PceI	AGGCCT	1 cut(s)	306
PfeI	GAWTC	4 cut(s)	379, 541, 605, 830
PkrI	GCNGC	1 cut(s)	781
PpuMI	RGGWCCY	1 cut(s)	208
Psp5II	RGGWCCY	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	673
PspN4I	GGNNCC	2 cut(s)	61, 209
PspPI	GGNCC	1 cut(s)	208
PspPPI	RGGWCCY	1 cut(s)	208
PsuI	RGATCY	1 cut(s)	568
PvuII	CAGCTG	1 cut(s)	575
RsaI	GTAC	2 cut(s)	101, 433
RsaNI	GTAC	2 cut(s)	100, 432
RseI	CAYNNNNRTG	1 cut(s)	270
SaqAI	TTAA	5 cut(s)	21, 510, 662, 944, 1018
SatI	GCNGC	1 cut(s)	780
Sau3AI	GATC	3 cut(s)	43, 568, 754
Sau96I	GGNCC	1 cut(s)	208
ScaI	AGTACT	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	675
SfaNI	GCATC	1 cut(s)	791
SinI	GGWCC	1 cut(s)	208
SmiMI	CAYNNNNRTG	1 cut(s)	270
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	7 cut(s)	333, 415, 466, 559, 747, 847, 955
SseBI	AGGCCT	1 cut(s)	306
SspI	AATATT	2 cut(s)	174, 459
SspMI	CTAG	1 cut(s)	705
StuI	AGGCCT	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	673
StyI	CCWWGG	2 cut(s)	247, 837
TaaI	ACNGT	3 cut(s)	496, 582, 622
TaqI	TCGA	1 cut(s)	766
TasI	AATT	7 cut(s)	333, 415, 466, 559, 747, 847, 955
TatI	WGTACW	1 cut(s)	99
TfiI	GAWTC	4 cut(s)	379, 541, 605, 830
Tru1I	TTAA	5 cut(s)	21, 510, 662, 944, 1018
Tru9I	TTAA	5 cut(s)	21, 510, 662, 944, 1018
TscAI	CASTG	2 cut(s)	272, 501
TseI	GCWGC	1 cut(s)	779
TspDTI	ATGAA	3 cut(s)	492, 540, 978
TspGWI	ACGGA	1 cut(s)	212
TspRI	CASTG	2 cut(s)	272, 501
VpaK11BI	GGWCC	1 cut(s)	208
XapI	RAATTY	3 cut(s)	466, 559, 847
XspI	CTAG	1 cut(s)	705
ZrmI	AGTACT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.