Rw2G031550

BAH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0002843
Physical Location & Seq
Reverse (-)
51685326 .. 51690273
4948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G031550.1

Sequence Viewer

Length: 978 bp
ATGTTGCATCCTGAAAAGATGAATATGGAACAAGATTCTGAATTTAAGTGGGGTGAAAGACTTGGAGTTGGTAGGACAAACAAGGATGTTCGGTTCTACCGGTCTTTCACATTTCAGGGCGTGGAGTACTCCCTGTATGATTCCACTGGCGCTTTGGAAACAGATATTGGTAAGATTATCAAAATTTATTCCACAGCAACTGAAAAGAAGGTTAGGATTGTGTGGTTTCTTCGGCCAGCTGAAATATGCAACTTTTTGGGTGATTATCAACCACACTGGAAAGAGATTTTTTTAGCTTCTGGCGAGGGTACAGGCCTCTCCAATCTGAATCCTCTGGAAGCAATTGTTGGAAAGTGTAATGTTGTCTGCGTATCAGAGGATACAAGGAATCCTCGTCCCTCTAAAGAAGAGTTCAGAACGGCCAACTACTTTTTCCATAGTACATTTGACGTTGACAGGCGAAAAATATTGCAGAAGTTTCCGGATCAAATATATGGAATTAAAGTGGAGAAATATTTTAACAGGCGAAAACAGCAAAGCCTCACCAGGATGGACCAAGCTGGACCATCAAATGTGCCTTCCAATTCACAATTGGACAAAGTGGTGGCATATCCAGTTAAAACTGGCAAGCCTAGTAGTAAATCAATCCGTATAGTCAAAGAATCGGAGAGTCGGCGTCCAGAAGCTAGACCATCAAGTGTGCCTTCCAATTCACAATTAAGCAAAGTGGTGTTGTGTCCACTCCTGAATGTTAAAGGAAATACGGTGGACCCTTTACTACCACCTGTGAGCACACCAGATACCCGTCCTTATAAGAAGATGAAAACTGCAGATAGTAGACCGCCAGATATTGATAAGAGTGGTTGGTTCAAGCCAGCATTTTGGGAGGAAAGACTGCGGACAGCTGAAGGTAATGGCACCTTGGTCCTGCTAGACAATCTAGATCCATCCTTACATCCTCCGAAGTACAGGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH RRM_1

Protein Analysis

325

Amino Acids

37.11

Weight (kDa)

9.42

Isoelectric Point (pI)

42.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 53 - 159 2.6e-08 BAH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 813
AccB1I GGYRCC 1 cut(s) 917
AccI GTMKAC 1 cut(s) 838
AccIII TCCGGA 1 cut(s) 481
AciI CCGC 2 cut(s) 842, 898
AclWI GGATC 2 cut(s) 492, 938
AcoI YGGCCR 2 cut(s) 233, 420
AcsI RAATTY 2 cut(s) 41, 183
AcuI CTGAAG 1 cut(s) 927
AcyI GRCGYC 1 cut(s) 676
AfaI GTAC 4 cut(s) 128, 310, 442, 968
AgeI ACCGGT 1 cut(s) 99
AgsI TTSAA 1 cut(s) 871
AjnI CCWGG 1 cut(s) 545
AjuI GAANNNNNNNTTGG 6 cut(s) 150, 182, 330, 362, 416, 448
AloI GAACNNNNNNTCC 2 cut(s) 77, 109
AluBI AGCT 5 cut(s) 239, 296, 560, 686, 905
AluI AGCT 5 cut(s) 239, 296, 560, 686, 905
Alw21I GWGCWC 1 cut(s) 794
AlwI GGATC 2 cut(s) 492, 938
AlwNI CAGNNNCTG 1 cut(s) 200
Aor13HI TCCGGA 1 cut(s) 481
AoxI GGCC 3 cut(s) 233, 313, 420
ApoI RAATTY 2 cut(s) 41, 183
AsiGI ACCGGT 1 cut(s) 99
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 4 cut(s) 553, 563, 769, 925
AsuHPI GGTGA 3 cut(s) 65, 272, 535
AvaII GGWCC 4 cut(s) 553, 563, 769, 925
BanI GGYRCC 1 cut(s) 917
Bbv12I GWGCWC 1 cut(s) 794
BccI CCATC 4 cut(s) 544, 574, 700, 955
BceAI ACGGC 1 cut(s) 435
BciT130I CCWGG 1 cut(s) 547
BciVI GTATCC 1 cut(s) 373
BfaI CTAG 5 cut(s) 633, 687, 932, 941, 976
BfmI CTRYAG 1 cut(s) 828
BfoI RGCGCY 1 cut(s) 153
BfuI GTATCC 1 cut(s) 373
BmcAI AGTACT 1 cut(s) 128
Bme1390I CCNGG 1 cut(s) 547
Bme18I GGWCC 4 cut(s) 553, 563, 769, 925
BmgT120I GGNCC 4 cut(s) 553, 563, 769, 925
BmiI GGNNCC 2 cut(s) 771, 919
BmrFI CCNGG 1 cut(s) 547
BmsI GCATC 1 cut(s) 16
BsaHI GRCGYC 1 cut(s) 676
BsaJI CCNNGG 1 cut(s) 921
BsaWI WCCGGW 2 cut(s) 99, 481
Bse118I RCCGGY 1 cut(s) 99
Bse1I ACTGG 4 cut(s) 151, 281, 614, 628
BseAI TCCGGA 1 cut(s) 481
BseBI CCWGG 1 cut(s) 547
BseDI CCNNGG 1 cut(s) 921
BseGI GGATG 5 cut(s) 7, 91, 555, 947, 955
BseNI ACTGG 4 cut(s) 151, 281, 614, 628
BshFI GGCC 3 cut(s) 235, 315, 422
BshNI GGYRCC 1 cut(s) 917
BshTI ACCGGT 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 794
BsiSI CCGG 2 cut(s) 100, 482
BslFI GGGAC 1 cut(s) 381
BsmFI GGGAC 1 cut(s) 381
BsnI GGCC 3 cut(s) 235, 315, 422
Bsp1286I GDGCHC 1 cut(s) 794
Bsp13I TCCGGA 1 cut(s) 481
Bsp143I GATC 3 cut(s) 484, 943, 972
BspACI CCGC 2 cut(s) 842, 898
BspANI GGCC 3 cut(s) 235, 315, 422
BspEI TCCGGA 1 cut(s) 481
BspLI GGNNCC 2 cut(s) 771, 919
BspMAI CTGCAG 1 cut(s) 832
BspPI GGATC 2 cut(s) 492, 938
BspT107I GGYRCC 1 cut(s) 917
BsrFI RCCGGY 1 cut(s) 99
BsrI ACTGG 4 cut(s) 151, 281, 614, 628
BssAI RCCGGY 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 921
BssMI GATC 3 cut(s) 484, 943, 972
BssNI GRCGYC 1 cut(s) 676
BssT1I CCWWGG 1 cut(s) 921
Bst2UI CCWGG 1 cut(s) 547
Bst4CI ACNGT 1 cut(s) 766
Bst6I CTCTTC 1 cut(s) 402
BstACI GRCGYC 1 cut(s) 676
BstC8I GCNNGC 3 cut(s) 237, 629, 876
BstF5I GGATG 5 cut(s) 7, 91, 555, 947, 955
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 3 cut(s) 487, 946, 975
BstMBI GATC 3 cut(s) 484, 943, 972
BstMWI GCNNNNNNNGC 1 cut(s) 532
BstNI CCWGG 1 cut(s) 547
BstSCI CCNGG 1 cut(s) 545
BstSFI CTRYAG 1 cut(s) 828
BstX2I RGATCY 2 cut(s) 943, 972
BstXI CCANNNNNNTGG 1 cut(s) 882
BstYI RGATCY 2 cut(s) 943, 972
BsuI GTATCC 1 cut(s) 373
BsuRI GGCC 3 cut(s) 235, 315, 422
BtsCI GGATG 5 cut(s) 7, 91, 555, 947, 955
BtsIMutI CAGTG 2 cut(s) 144, 274
Cac8I GCNNGC 3 cut(s) 237, 629, 876
CaiI CAGNNNCTG 1 cut(s) 200
CfoI GCGC 1 cut(s) 152
Cfr10I RCCGGY 1 cut(s) 99
Cfr13I GGNCC 4 cut(s) 553, 563, 769, 925
CseI GACGC 1 cut(s) 665
Csp6I GTAC 4 cut(s) 127, 309, 441, 967
CspAI ACCGGT 1 cut(s) 99
CviQI GTAC 4 cut(s) 127, 309, 441, 967
DpnI GATC 3 cut(s) 486, 945, 974
DpnII GATC 3 cut(s) 484, 943, 972
EaeI YGGCCR 2 cut(s) 233, 420
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
Eco130I CCWWGG 1 cut(s) 921
Eco147I AGGCCT 1 cut(s) 315
Eco47I GGWCC 4 cut(s) 553, 563, 769, 925
Eco57I CTGAAG 1 cut(s) 927
EcoRII CCWGG 1 cut(s) 545
EcoT14I CCWWGG 1 cut(s) 921
ErhI CCWWGG 1 cut(s) 921
FaiI YATR 9 cut(s) 26, 138, 247, 438, 493, 495, 610, 653, 813
FalI AAGNNNNNCTT 2 cut(s) 688, 720
FaqI GGGAC 1 cut(s) 381
FblI GTMKAC 1 cut(s) 838
FokI GGATG 4 cut(s) 98, 562, 934, 942
FspBI CTAG 5 cut(s) 633, 687, 932, 941, 976
GlaI GCGC 1 cut(s) 151
HaeII RGCGCY 1 cut(s) 153
HaeIII GGCC 3 cut(s) 235, 315, 422
HapII CCGG 2 cut(s) 100, 482
HgaI GACGC 1 cut(s) 665
HhaI GCGC 1 cut(s) 152
Hin1I GRCGYC 1 cut(s) 676
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HincII GTYRAC 1 cut(s) 454
HindII GTYRAC 1 cut(s) 454
HinfI GANTC 6 cut(s) 35, 140, 328, 388, 662, 670
HpaII CCGG 2 cut(s) 100, 482
HphI GGTGA 3 cut(s) 65, 272, 535
Hpy166II GTNNAC 4 cut(s) 454, 740, 769, 839
Hpy188I TCNGA 6 cut(s) 40, 327, 376, 416, 667, 963
Hpy188III TCNNGA 6 cut(s) 11, 335, 482, 680, 745, 941
Hpy8I GTNNAC 4 cut(s) 454, 740, 769, 839
HpyAV CCTTC 4 cut(s) 202, 588, 714, 902
HpyCH4III ACNGT 1 cut(s) 766
HpyCH4IV ACGT 1 cut(s) 450
HpyCH4V TGCA 4 cut(s) 7, 249, 472, 830
HpyF10VI GCNNNNNNNGC 1 cut(s) 532
HpySE526I ACGT 1 cut(s) 450
Hsp92I GRCGYC 1 cut(s) 676
HspAI GCGC 1 cut(s) 150
Kpn2I TCCGGA 1 cut(s) 481
Kzo9I GATC 3 cut(s) 484, 943, 972
LweI GCATC 1 cut(s) 16
MaeI CTAG 5 cut(s) 633, 687, 932, 941, 976
MaeII ACGT 1 cut(s) 450
MalI GATC 3 cut(s) 486, 945, 974
MboI GATC 3 cut(s) 484, 943, 972
MboII GAAGA 3 cut(s) 221, 419, 829
MfeI CAATTG 2 cut(s) 342, 590
MflI RGATCY 2 cut(s) 943, 972
MhlI GDGCHC 1 cut(s) 794
MluCI AATT 8 cut(s) 41, 183, 342, 498, 583, 590, 709, 716
MlyI GAGTC 1 cut(s) 679
MmeI TCCRAC 1 cut(s) 328
MnlI CCTC 9 cut(s) 298, 326, 342, 370, 402, 409, 551, 880, 969
MroI TCCGGA 1 cut(s) 481
MseI TTAA 6 cut(s) 45, 501, 519, 618, 719, 753
MslI CAYNNNNRTG 1 cut(s) 548
MspA1I CMGCKG 2 cut(s) 239, 905
MspI CCGG 2 cut(s) 100, 482
MspR9I CCNGG 1 cut(s) 547
MunI CAATTG 2 cut(s) 342, 590
MvaI CCWGG 1 cut(s) 547
MwoI GCNNNNNNNGC 1 cut(s) 532
NdeII GATC 3 cut(s) 484, 943, 972
NlaIV GGNNCC 2 cut(s) 771, 919
PceI AGGCCT 1 cut(s) 315
PfeI GAWTC 5 cut(s) 35, 140, 328, 388, 662
PinAI ACCGGT 1 cut(s) 99
PleI GAGTC 1 cut(s) 678
PpsI GAGTC 1 cut(s) 678
PsiI TTATAA 1 cut(s) 813
Psp6I CCWGG 1 cut(s) 545
PspGI CCWGG 1 cut(s) 545
PspN4I GGNNCC 2 cut(s) 771, 919
PspPI GGNCC 4 cut(s) 553, 563, 769, 925
PstI CTGCAG 1 cut(s) 832
PstNI CAGNNNCTG 1 cut(s) 200
PsuI RGATCY 2 cut(s) 943, 972
PvuII CAGCTG 2 cut(s) 239, 905
RsaI GTAC 4 cut(s) 128, 310, 442, 968
RsaNI GTAC 4 cut(s) 127, 309, 441, 967
RseI CAYNNNNRTG 1 cut(s) 548
SaqAI TTAA 6 cut(s) 45, 501, 519, 618, 719, 753
Sau3AI GATC 3 cut(s) 484, 943, 972
Sau96I GGNCC 4 cut(s) 553, 563, 769, 925
ScaI AGTACT 1 cut(s) 128
SchI GAGTC 1 cut(s) 679
ScrFI CCNGG 1 cut(s) 547
SduI GDGCHC 1 cut(s) 794
SfaNI GCATC 1 cut(s) 16
SfcI CTRYAG 1 cut(s) 828
SinI GGWCC 4 cut(s) 553, 563, 769, 925
SmiMI CAYNNNNRTG 1 cut(s) 548
Sse9I AATT 8 cut(s) 41, 183, 342, 498, 583, 590, 709, 716
SseBI AGGCCT 1 cut(s) 315
SsiI CCGC 2 cut(s) 842, 898
SspI AATATT 2 cut(s) 468, 515
SspMI CTAG 5 cut(s) 633, 687, 932, 941, 976
StuI AGGCCT 1 cut(s) 315
StyD4I CCNGG 1 cut(s) 545
StyI CCWWGG 1 cut(s) 921
TaaI ACNGT 1 cut(s) 766
TaiI ACGT 1 cut(s) 453
TasI AATT 8 cut(s) 41, 183, 342, 498, 583, 590, 709, 716
TatI WGTACW 3 cut(s) 126, 440, 966
TfiI GAWTC 5 cut(s) 35, 140, 328, 388, 662
Tru1I TTAA 6 cut(s) 45, 501, 519, 618, 719, 753
Tru9I TTAA 6 cut(s) 45, 501, 519, 618, 719, 753
TscAI CASTG 2 cut(s) 151, 281
TspDTI ATGAA 2 cut(s) 35, 836
TspGWI ACGGA 1 cut(s) 638
TspRI CASTG 2 cut(s) 151, 281
VpaK11BI GGWCC 4 cut(s) 553, 563, 769, 925
XapI RAATTY 2 cut(s) 41, 183
XbaI TCTAGA 1 cut(s) 940
XcmI CCANNNNNNNNNTGG 2 cut(s) 151, 589
XmiI GTMKAC 1 cut(s) 838
XspI CTAG 5 cut(s) 633, 687, 932, 941, 976
ZrmI AGTACT 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.