Rh2CG372800

BAH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002843
Physical Location & Seq
Reverse (-)
50587110 .. 50595348
8239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG372800.1

Sequence Viewer

Length: 1452 bp
ATGTTGCATCCTGAAAAGATGAATATGGAACAAGATTCTGAATTTAAGTGGGGTGAAAGACTTGGAGTTGGTAGGACAAACAAGGATGTTCGGTTCTACCGGTCTTTCACATTTCAGGGCGTGGAGTACTCCCTGTATGATTCCGTACACCTCTACAGGACTGGCGCTTTGGAAACAGATATTGGTAAGATTATCAAAATTTATTCCACAGCAACTGAAAAGAAGGTTAGGATTGTGTGGTTTCTTCGGCCAGCTGAAATATGCAACTTTTTGGGTGATTATCAACCACACTGGAATGAGATTTTTTTAGCTTCTGGCGAGGGTACAGGCCTCTCCAATCTGAATCCTCTGGAAGCAATTGTTGGAAAGTGTAATGTTGTCTGCATATCAGAGGATACAAGGAATCCCTGTCCCTCTACAGAAGAGTTCAGAATGGCCAACTACTTTTTCCATCGTACGTTTGACGTTGACAGGCGCAAAATATTGCAGAAGTTTCCGGATCAAATATATGGAATTAAAGTGGAGAAATATTTTAACAGGCGAAAACAGCAAAGCCTCACCAGGATGGACCAAGCTGGACCATCAAATGTGCCTTCCAATTCACAATTGGACAAGGTGGTGGCATATCCAGTTAAAAATGGCAGGCCTAGTAGTAAATCAATCCGTATAGTCAAAGAATCGGAGAGTCGGCGTCCAGAAGCTAGACCATCAAGTGTGCCTTCCAATTCACAATTAAGCAAAGTGGTGTTGTGTCCACTCCTGAATGTTAAAAGAAATACAGTGGACCCTTTACTACCACCTGTGAGCACAGCAGATACCCGTCCTTATAAGAAGATGAAAACTGCAGATAGTAGACTGCCAGATATTGATAAGAGTGGTTGGTTCAAGCCAGCATTTTGGGAGGAAAGACTGCGGACAGCTGAAGGTAATGGCACCTTGGTCCTGCTAGACAATCTAGATCCATCCTTTACATCCTCCGAAGTACAGGATCTAGTTTGGGCTGCATTCAAGCAGATGGTTGAGGCAAAAATGATACCATGCACTCCTTTTTCTAATCCACGCTATGGAAAGGCTTTTGTTATATTTAAGTCGTCAGATGATGCTGAATCTGCTATAGTTGAGTTAAATAGGAGATGCCTGACTCTGGCAGATGGGAGACCTGTCATCGGTACCATCTGCAGAGGGACTCTAAAAGTGCCTGACAAAACATCCAGATTTTATGGACATCTGACGATTGACAAACATCGGCTTAAAAACCAACGTGAAGAGATGAGAAAAGCAGTATCAACGTCGCACTTTGCTCAGCCCAATACAGTTGAGTATGATATGGCAATGGACTGGTGTTTACTGCAGGAAAGGTCAGATTTGTGGTGGAAGGCTTTATATCAGGACCATGAGGAAGAAGAGAAGGAGATAAAGAAGTTGGGAGAGCAAAAGGTCAAGTTTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH RRM_1

Protein Analysis

483

Amino Acids

55.65

Weight (kDa)

9.04

Isoelectric Point (pI)

44.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 47 - 163 1e-07 BAH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 828
Acc65I GGTACC 1 cut(s) 1169
AccB1I GGYRCC 2 cut(s) 932, 1169
AccB7I CCANNNNNTGG 1 cut(s) 1064
AccI GTMKAC 1 cut(s) 853
AccIII TCCGGA 1 cut(s) 496
AciI CCGC 1 cut(s) 913
AclWI GGATC 3 cut(s) 507, 953, 996
AcoI YGGCCR 2 cut(s) 248, 435
AcsI RAATTY 2 cut(s) 41, 198
AcuI CTGAAG 1 cut(s) 942
AcyI GRCGYC 1 cut(s) 691
AfaI GTAC 6 cut(s) 128, 147, 325, 457, 984, 1171
AfiI CCNNNNNNNGG 3 cut(s) 1064, 1144, 1166
AgeI ACCGGT 1 cut(s) 99
AgsI TTSAA 2 cut(s) 886, 1009
AjnI CCWGG 1 cut(s) 560
AjuI GAANNNNNNNTTGG 6 cut(s) 165, 197, 345, 377, 431, 463
AloI GAACNNNNNNTCC 2 cut(s) 77, 109
AluBI AGCT 5 cut(s) 254, 311, 575, 701, 920
AluI AGCT 5 cut(s) 254, 311, 575, 701, 920
Alw21I GWGCWC 1 cut(s) 809
Alw26I GTCTC 1 cut(s) 1150
AlwI GGATC 3 cut(s) 507, 953, 996
AlwNI CAGNNNCTG 1 cut(s) 215
Aor13HI TCCGGA 1 cut(s) 496
AoxI GGCC 4 cut(s) 248, 328, 435, 644
ApeKI GCWGC 1 cut(s) 1001
ApoI RAATTY 2 cut(s) 41, 198
ArsI GACNNNNNNTTYG 2 cut(s) 151, 183
AsiGI ACCGGT 1 cut(s) 99
Asp718I GGTACC 1 cut(s) 1169
AspLEI GCGC 2 cut(s) 167, 477
AspS9I GGNCC 5 cut(s) 568, 578, 784, 940, 1390
AsuHPI GGTGA 3 cut(s) 65, 287, 550
AvaII GGWCC 5 cut(s) 568, 578, 784, 940, 1390
BalI TGGCCA 1 cut(s) 437
BanI GGYRCC 2 cut(s) 932, 1169
Bbv12I GWGCWC 1 cut(s) 809
BbvI GCAGC 1 cut(s) 988
BccI CCATC 8 cut(s) 459, 559, 589, 715, 970, 1009, 1145, 1181
BciT130I CCWGG 1 cut(s) 562
BciVI GTATCC 1 cut(s) 388
BcoDI GTCTC 1 cut(s) 1150
BfaI CTAG 5 cut(s) 648, 702, 947, 956, 992
BfmI CTRYAG 6 cut(s) 154, 417, 843, 1113, 1177, 1349
BfoI RGCGCY 1 cut(s) 168
BfuI GTATCC 1 cut(s) 388
BisI GCNGC 1 cut(s) 1002
BlpI GCTNAGC 1 cut(s) 1302
BlsI GCNGC 1 cut(s) 1003
BmcAI AGTACT 1 cut(s) 128
Bme1390I CCNGG 1 cut(s) 562
Bme18I GGWCC 5 cut(s) 568, 578, 784, 940, 1390
BmgT120I GGNCC 5 cut(s) 568, 578, 784, 940, 1390
BmiI GGNNCC 3 cut(s) 786, 934, 1171
BmrFI CCNGG 1 cut(s) 562
BmsI GCATC 3 cut(s) 16, 1090, 1124
Bpu1102I GCTNAGC 1 cut(s) 1302
BsaHI GRCGYC 1 cut(s) 691
BsaI GGTCTC 1 cut(s) 1150
BsaJI CCNNGG 1 cut(s) 936
BsaWI WCCGGW 2 cut(s) 99, 496
Bsc4I CCNNNNNNNGG 3 cut(s) 1064, 1144, 1166
Bse118I RCCGGY 1 cut(s) 99
Bse1I ACTGG 4 cut(s) 166, 296, 629, 1343
Bse3DI GCAATG 1 cut(s) 1338
BseAI TCCGGA 1 cut(s) 496
BseBI CCWGG 1 cut(s) 562
BseDI CCNNGG 1 cut(s) 936
BseGI GGATG 6 cut(s) 7, 91, 570, 962, 971, 1208
BseLI CCNNNNNNNGG 3 cut(s) 1064, 1144, 1166
BseMI GCAATG 1 cut(s) 1338
BseMII CTCAG 1 cut(s) 1316
BseNI ACTGG 4 cut(s) 166, 296, 629, 1343
BseXI GCAGC 1 cut(s) 988
BshFI GGCC 4 cut(s) 250, 330, 437, 646
BshNI GGYRCC 2 cut(s) 932, 1169
BshTI ACCGGT 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 809
BsiSI CCGG 2 cut(s) 100, 497
BsiWI CGTACG 1 cut(s) 455
BslFI GGGAC 2 cut(s) 396, 1198
BslI CCNNNNNNNGG 3 cut(s) 1064, 1144, 1166
BsmAI GTCTC 1 cut(s) 1150
BsmFI GGGAC 2 cut(s) 396, 1198
BsmI GAATGC 1 cut(s) 1004
BsnI GGCC 4 cut(s) 250, 330, 437, 646
Bso31I GGTCTC 1 cut(s) 1150
Bsp1286I GDGCHC 1 cut(s) 809
Bsp13I TCCGGA 1 cut(s) 496
Bsp143I GATC 3 cut(s) 499, 958, 988
Bsp1720I GCTNAGC 1 cut(s) 1302
BspACI CCGC 1 cut(s) 913
BspANI GGCC 4 cut(s) 250, 330, 437, 646
BspCNI CTCAG 1 cut(s) 1315
BspEI TCCGGA 1 cut(s) 496
BspLI GGNNCC 3 cut(s) 786, 934, 1171
BspMAI CTGCAG 3 cut(s) 847, 1181, 1353
BspPI GGATC 3 cut(s) 507, 953, 996
BspT107I GGYRCC 2 cut(s) 932, 1169
BspTNI GGTCTC 1 cut(s) 1150
BsrDI GCAATG 1 cut(s) 1338
BsrFI RCCGGY 1 cut(s) 99
BsrI ACTGG 4 cut(s) 166, 296, 629, 1343
BssAI RCCGGY 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 936
BssMI GATC 3 cut(s) 499, 958, 988
BssNI GRCGYC 1 cut(s) 691
BssT1I CCWWGG 1 cut(s) 936
Bst2UI CCWGG 1 cut(s) 562
Bst4CI ACNGT 2 cut(s) 781, 1315
Bst6I CTCTTC 3 cut(s) 417, 1260, 1398
BstACI GRCGYC 1 cut(s) 691
BstC8I GCNNGC 3 cut(s) 252, 644, 891
BstDEI CTNAG 1 cut(s) 1302
BstF5I GGATG 6 cut(s) 7, 91, 570, 962, 971, 1208
BstH2I RGCGCY 1 cut(s) 168
BstHHI GCGC 2 cut(s) 167, 477
BstKTI GATC 3 cut(s) 502, 961, 991
BstMAI GTCTC 1 cut(s) 1150
BstMBI GATC 3 cut(s) 499, 958, 988
BstMWI GCNNNNNNNGC 2 cut(s) 547, 1109
BstNI CCWGG 1 cut(s) 562
BstSCI CCNGG 1 cut(s) 560
BstSFI CTRYAG 6 cut(s) 154, 417, 843, 1113, 1177, 1349
BstV1I GCAGC 1 cut(s) 988
BstX2I RGATCY 2 cut(s) 958, 988
BstXI CCANNNNNNTGG 1 cut(s) 897
BstYI RGATCY 2 cut(s) 958, 988
BsuI GTATCC 1 cut(s) 388
BsuRI GGCC 4 cut(s) 250, 330, 437, 646
BtsCI GGATG 6 cut(s) 7, 91, 570, 962, 971, 1208
BtsIMutI CAGTG 2 cut(s) 289, 786
Cac8I GCNNGC 3 cut(s) 252, 644, 891
CaiI CAGNNNCTG 1 cut(s) 215
CfoI GCGC 2 cut(s) 167, 477
Cfr10I RCCGGY 1 cut(s) 99
Cfr13I GGNCC 5 cut(s) 568, 578, 784, 940, 1390
CseI GACGC 1 cut(s) 680
Csp6I GTAC 6 cut(s) 127, 146, 324, 456, 983, 1170
CspAI ACCGGT 1 cut(s) 99
CviAII CATG 2 cut(s) 1038, 1394
CviQI GTAC 6 cut(s) 127, 146, 324, 456, 983, 1170
DdeI CTNAG 1 cut(s) 1302
DpnI GATC 3 cut(s) 501, 960, 990
DpnII GATC 3 cut(s) 499, 958, 988
EaeI YGGCCR 2 cut(s) 248, 435
Eam1104I CTCTTC 3 cut(s) 417, 1260, 1398
EarI CTCTTC 3 cut(s) 417, 1260, 1398
Eco130I CCWWGG 1 cut(s) 936
Eco147I AGGCCT 2 cut(s) 330, 646
Eco31I GGTCTC 1 cut(s) 1150
Eco47I GGWCC 5 cut(s) 568, 578, 784, 940, 1390
Eco57I CTGAAG 1 cut(s) 942
EcoRII CCWGG 1 cut(s) 560
EcoT14I CCWWGG 1 cut(s) 936
ErhI CCWWGG 1 cut(s) 936
FaeI CATG 2 cut(s) 1041, 1397
FalI AAGNNNNNCTT 2 cut(s) 703, 735
FaqI GGGAC 2 cut(s) 396, 1198
FatI CATG 2 cut(s) 1037, 1393
FblI GTMKAC 1 cut(s) 853
Fnu4HI GCNGC 1 cut(s) 1002
FokI GGATG 5 cut(s) 98, 577, 949, 958, 1195
Fsp4HI GCNGC 1 cut(s) 1002
FspBI CTAG 5 cut(s) 648, 702, 947, 956, 992
GlaI GCGC 2 cut(s) 166, 476
GluI GCNGC 1 cut(s) 1002
HaeII RGCGCY 1 cut(s) 168
HaeIII GGCC 4 cut(s) 250, 330, 437, 646
HapII CCGG 2 cut(s) 100, 497
HgaI GACGC 1 cut(s) 680
HhaI GCGC 2 cut(s) 167, 477
Hin1I GRCGYC 1 cut(s) 691
Hin1II CATG 2 cut(s) 1041, 1397
Hin6I GCGC 2 cut(s) 165, 475
HinP1I GCGC 2 cut(s) 165, 475
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HinfI GANTC 9 cut(s) 35, 140, 343, 403, 677, 685, 1106, 1141, 1186
HpaII CCGG 2 cut(s) 100, 497
HphI GGTGA 3 cut(s) 65, 287, 550
Hpy166II GTNNAC 6 cut(s) 148, 469, 755, 784, 854, 1346
Hpy188I TCNGA 9 cut(s) 40, 342, 391, 431, 682, 979, 1096, 1230, 1363
Hpy188III TCNNGA 8 cut(s) 11, 350, 497, 695, 760, 956, 1212, 1388
Hpy8I GTNNAC 6 cut(s) 148, 469, 755, 784, 854, 1346
Hpy99I CGWCG 1 cut(s) 1294
HpyAV CCTTC 6 cut(s) 217, 603, 729, 917, 1369, 1402
HpyCH4III ACNGT 2 cut(s) 781, 1315
HpyCH4IV ACGT 4 cut(s) 458, 465, 1261, 1289
HpyCH4V TGCA 9 cut(s) 7, 264, 384, 487, 845, 1004, 1041, 1179, 1351
HpyF10VI GCNNNNNNNGC 2 cut(s) 547, 1109
HpyF3I CTNAG 1 cut(s) 1302
HpySE526I ACGT 4 cut(s) 458, 465, 1261, 1289
Hsp92I GRCGYC 1 cut(s) 691
Hsp92II CATG 2 cut(s) 1041, 1397
HspAI GCGC 2 cut(s) 165, 475
Kpn2I TCCGGA 1 cut(s) 496
KpnI GGTACC 1 cut(s) 1173
Kzo9I GATC 3 cut(s) 499, 958, 988
Lsp1109I GCAGC 1 cut(s) 988
LweI GCATC 3 cut(s) 16, 1090, 1124
MaeI CTAG 5 cut(s) 648, 702, 947, 956, 992
MaeII ACGT 4 cut(s) 458, 465, 1261, 1289
MalI GATC 3 cut(s) 501, 960, 990
MboI GATC 3 cut(s) 499, 958, 988
MboII GAAGA 6 cut(s) 236, 434, 844, 1277, 1412, 1415
MfeI CAATTG 2 cut(s) 357, 605
MflI RGATCY 2 cut(s) 958, 988
MhlI GDGCHC 1 cut(s) 809
MlsI TGGCCA 1 cut(s) 437
MluCI AATT 9 cut(s) 41, 198, 357, 513, 598, 605, 724, 731, 1447
MluNI TGGCCA 1 cut(s) 437
MlyI GAGTC 3 cut(s) 694, 1135, 1180
MmeI TCCRAC 1 cut(s) 343
Mox20I TGGCCA 1 cut(s) 437
MroI TCCGGA 1 cut(s) 496
MscI TGGCCA 1 cut(s) 437
MslI CAYNNNNRTG 2 cut(s) 294, 563
Msp20I TGGCCA 1 cut(s) 437
MspA1I CMGCKG 2 cut(s) 254, 920
MspI CCGG 2 cut(s) 100, 497
MspR9I CCNGG 1 cut(s) 562
MunI CAATTG 2 cut(s) 357, 605
Mva1269I GAATGC 1 cut(s) 1004
MvaI CCWGG 1 cut(s) 562
MwoI GCNNNNNNNGC 2 cut(s) 547, 1109
NdeII GATC 3 cut(s) 499, 958, 988
NlaIII CATG 2 cut(s) 1041, 1397
NlaIV GGNNCC 3 cut(s) 786, 934, 1171
PceI AGGCCT 2 cut(s) 330, 646
PctI GAATGC 1 cut(s) 1004
PfeI GAWTC 6 cut(s) 35, 140, 343, 403, 677, 1106
Pfl23II CGTACG 1 cut(s) 455
PflMI CCANNNNNTGG 1 cut(s) 1064
PinAI ACCGGT 1 cut(s) 99
PkrI GCNGC 1 cut(s) 1003
PleI GAGTC 3 cut(s) 693, 1135, 1180
PpsI GAGTC 3 cut(s) 693, 1135, 1180
PsiI TTATAA 1 cut(s) 828
Psp6I CCWGG 1 cut(s) 560
PspGI CCWGG 1 cut(s) 560
PspLI CGTACG 1 cut(s) 455
PspN4I GGNNCC 3 cut(s) 786, 934, 1171
PspPI GGNCC 5 cut(s) 568, 578, 784, 940, 1390
PstI CTGCAG 3 cut(s) 847, 1181, 1353
PstNI CAGNNNCTG 1 cut(s) 215
PsuI RGATCY 2 cut(s) 958, 988
PvuII CAGCTG 2 cut(s) 254, 920
RsaI GTAC 6 cut(s) 128, 147, 325, 457, 984, 1171
RsaNI GTAC 6 cut(s) 127, 146, 324, 456, 983, 1170
RseI CAYNNNNRTG 2 cut(s) 294, 563
SatI GCNGC 1 cut(s) 1002
Sau3AI GATC 3 cut(s) 499, 958, 988
Sau96I GGNCC 5 cut(s) 568, 578, 784, 940, 1390
ScaI AGTACT 1 cut(s) 128
SchI GAGTC 3 cut(s) 694, 1135, 1180
ScrFI CCNGG 1 cut(s) 562
SduI GDGCHC 1 cut(s) 809
SfaNI GCATC 3 cut(s) 16, 1090, 1124
SfcI CTRYAG 6 cut(s) 154, 417, 843, 1113, 1177, 1349
SinI GGWCC 5 cut(s) 568, 578, 784, 940, 1390
SmiMI CAYNNNNRTG 2 cut(s) 294, 563
Sse9I AATT 9 cut(s) 41, 198, 357, 513, 598, 605, 724, 731, 1447
SseBI AGGCCT 2 cut(s) 330, 646
SsiI CCGC 1 cut(s) 913
SspI AATATT 2 cut(s) 483, 530
SspMI CTAG 5 cut(s) 648, 702, 947, 956, 992
StuI AGGCCT 2 cut(s) 330, 646
StyD4I CCNGG 1 cut(s) 560
StyI CCWWGG 1 cut(s) 936
TaaI ACNGT 2 cut(s) 781, 1315
TaiI ACGT 4 cut(s) 461, 468, 1264, 1292
TasI AATT 9 cut(s) 41, 198, 357, 513, 598, 605, 724, 731, 1447
TatI WGTACW 2 cut(s) 126, 982
TfiI GAWTC 6 cut(s) 35, 140, 343, 403, 677, 1106
TscAI CASTG 2 cut(s) 296, 786
TseI GCWGC 1 cut(s) 1001
TspDTI ATGAA 2 cut(s) 35, 851
TspGWI ACGGA 2 cut(s) 133, 653
TspRI CASTG 2 cut(s) 296, 786
Van91I CCANNNNNTGG 1 cut(s) 1064
VpaK11BI GGWCC 5 cut(s) 568, 578, 784, 940, 1390
XapI RAATTY 2 cut(s) 41, 198
XbaI TCTAGA 1 cut(s) 955
XcmI CCANNNNNNNNNTGG 1 cut(s) 604
XmiI GTMKAC 1 cut(s) 853
XspI CTAG 5 cut(s) 648, 702, 947, 956, 992
ZrmI AGTACT 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.