Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002843

Physical Location & Seq

Genomic Coordinates Forward (+)

5744095 .. 5751604

Gene Structure 7510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G077800.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

ATGGTAGGGTTGGAAGAGACAAATATGGAAGATGATTATTTTAACTGGGGTAAGAAAGGTGGAGTTGGGGAAGTGGAACGTGTCCAGTTCTACGAGTCATTCACTTTGGAAGGCATGGAATACTCGCTGTATGATTGTGTACATCTTTACAGAAGTGGTTGTTGTGAGACTGATATCGGTAAGCTTGTGGAAATATATGACACAGAGGACCATGAAAAGAAGATAAAGGTCGTGTGGTTTTTTCGTCCTTCGGATATACATAACTTTTTGGGTGATTGGAAACCACGCCGGAACGAGATACTTTTAGCTTCTGGTGTGGGTCAAGGCCTCTCCAATGTCAATCCTCTGGAAGCAATAGTTCAAAAATGCAATGTTGTCTGCACATCAAAGGATGTGAGGAATCCTCAGCCATCTGAAGAAGAGTTGAGAATGGCTAGTTACATTTTCTCTCATAATTTTGATGTAGGAAAGCGCCAAATATTGGAGAACTTTCCAGATGAAATAAGTGGAATTAAAGTGGAGTGCTTTTTTAACATGAGAAACAATCAACAGCTCTTCAGGCTCCCCAAGTTCCAGACAAATTTGACAGACCCAGCTGGACCATCAAATGTGCCTTCCAAGTTAGAATTGGACGAAGCGAAGGCCTCTCCAGTTAAAAATAAATTGAAAGAGTCAATGGTTGGTACTGGGGAGCAAGGATGTGCTTCAAATGAGATGTTAAGACTTAAACTTGCTCTTGATGGAAATGGAACTCAGTCCGCTAGAATATCACACGGTCAAGATAAAGAAAGACACAAAGTTAGATTTGTTGATCAACCACATATAAGTGCATCAGATTGTGTAGCTTTCACTAAGGGGGATACTTCTAGAAAGAAGCCTGATGGTGTAGCTTTCACTAAGGGGGATGCCTCTAGAAAGAAGCCATATATTGATAAAAGAAGTTGGTTCAAGCAACCATCTTGGGAGGAAAAACTGCAGAGAGCTCAAGATGCAGGCCATTTGGTTTTACTAGACAATCTGGATCCATCCTATGCATCATCCGAAGTAGAGGCTCTAGTTTGGAAAGCATTTCGCGAAAAGGTTGAGGCAAAAATGATACAATACAGTACTTTTTCTACTCCGCAATATGGCAAGGCTTTTGTTATATTCAAGTCAAAGATTACTGCTGACCGTGTAATATCTGAATTAAACGGGAGATGCCTGGTTTTGGAAAATTGGAGACCTGTCATAGGTATCAGAAGAAGTCTAAAAGGGCCAGACAAAACAGCCAGATTTGTTGGACATCTGAGCATTGCCAAAATCAGGCTTCAAAGTCAACGTGAAGAGATGAGAAAGGCAGTATCAACATCACACTGTTCCCAACCTAATACAATTGAGTATGATATGGCTCTGGAATGGTGTTTACAACAGGAAAAGTCAGATGCATGCTGGAAGAATTTATATGAGAAACAAATGAAGGAGATTAGAGAAGCTAGGAAAGCTATAACTAATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH RRM_1

Protein Analysis

499

Amino Acids

56.92

Weight (kDa)

8.3

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15605 AT3G15605 AT3G15605 AT3G15605
fragaria_vesca	FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540
malus_domestica	MD09G1219000.v1.1
prunus_persica	Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1
pyrus_communis	pycom09g13690
rosa_chinensis	RchiOBHm_Chr2g0136961
rosa_laevigata	RLG00000019591
rosa_multiflora	Rmu_co8420089.1_g000001 Rmu_sc0001374.1_g000069
rosa_roxburghii	Rroxscaffold_2G00107840 Rroxscaffold_2G00107850
rosa_rugosa	Rorug02G0335700 Rorug02G0335800 Rorug02G0335900 Rorug02G0336000 Rorug02G0336100 Rorug02G0336200
rosa_samantha	Rh2AG385600 Rh2BG392600 Rh2CG372800 Rh2DG408700
rosa_wichuraiana	Rw2G031540 Rw2G031550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	481
AccII	CGCG	1 cut(s)	1074
AciI	CCGC	2 cut(s)	759, 1121
AclWI	GGATC	2 cut(s)	1016, 1029
AcsI	RAATTY	2 cut(s)	580, 1435
AcuI	CTGAAG	2 cut(s)	435, 541
AfaI	GTAC	3 cut(s)	141, 685, 1108
AfiI	CCNNNNNNNGG	5 cut(s)	481, 1127, 1207, 1229, 1302
AflIII	ACRYGT	1 cut(s)	79
AgsI	TTSAA	6 cut(s)	362, 667, 708, 949, 1150, 1310
AjnI	CCWGG	1 cut(s)	1200
AluBI	AGCT	9 cut(s)	184, 308, 553, 596, 845, 890, 983, 1472, 1481
AluI	AGCT	9 cut(s)	184, 308, 553, 596, 845, 890, 983, 1472, 1481
Alw21I	GWGCWC	1 cut(s)	985
Alw26I	GTCTC	3 cut(s)	11, 161, 1213
AlwI	GGATC	2 cut(s)	1016, 1029
AoxI	GGCC	4 cut(s)	325, 642, 994, 1253
ApoI	RAATTY	2 cut(s)	580, 1435
AspLEI	GCGC	1 cut(s)	474
AspS9I	GGNCC	3 cut(s)	208, 599, 1253
AsuHPI	GGTGA	1 cut(s)	284
AvaII	GGWCC	2 cut(s)	208, 599
BamHI	GGATCC	1 cut(s)	1021
BanII	GRGCYC	1 cut(s)	985
Bbv12I	GWGCWC	1 cut(s)	985
BbvCI	CCTCAGC	1 cut(s)	405
BccI	CCATC	6 cut(s)	418, 610, 734, 875, 964, 1033
BciT130I	CCWGG	1 cut(s)	1202
BciVI	GTATCC	1 cut(s)	853
BclI	TGATCA	1 cut(s)	811
BcoDI	GTCTC	3 cut(s)	11, 161, 1213
BfaI	CTAG	7 cut(s)	435, 762, 867, 912, 1010, 1055, 1473
BfmI	CTRYAG	1 cut(s)	974
BfoI	RGCGCY	1 cut(s)	475
BfuI	GTATCC	1 cut(s)	853
BmcAI	AGTACT	1 cut(s)	1108
Bme1390I	CCNGG	1 cut(s)	1202
Bme18I	GGWCC	2 cut(s)	208, 599
BmgT120I	GGNCC	3 cut(s)	208, 599, 1253
BmiI	GGNNCC	2 cut(s)	563, 1023
BmrFI	CCNGG	1 cut(s)	1202
BmrI	ACTGGG	2 cut(s)	55, 696
BmsI	GCATC	6 cut(s)	839, 895, 979, 1043, 1187, 1411
BmuI	ACTGGG	2 cut(s)	55, 696
BplI	GAGNNNNNCTC	2 cut(s)	388, 420
BpmI	CTGGAG	1 cut(s)	633
Bpu10I	CCTNAGC	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	969
BsaI	GGTCTC	1 cut(s)	1213
Bsc4I	CCNNNNNNNGG	5 cut(s)	481, 1127, 1207, 1229, 1302
Bse1I	ACTGG	4 cut(s)	50, 85, 650, 691
Bse3DI	GCAATG	2 cut(s)	376, 1290
BseBI	CCWGG	1 cut(s)	1202
BseGI	GGATG	5 cut(s)	397, 704, 910, 1025, 1037
BseLI	CCNNNNNNNGG	5 cut(s)	481, 1127, 1207, 1229, 1302
BseMI	GCAATG	2 cut(s)	376, 1290
BseMII	CTCAG	3 cut(s)	419, 767, 1277
BseNI	ACTGG	4 cut(s)	50, 85, 650, 691
BseYI	CCCAGC	1 cut(s)	592
BsgI	GTGCAG	1 cut(s)	364
Bsh1236I	CGCG	1 cut(s)	1074
BshFI	GGCC	4 cut(s)	327, 644, 996, 1255
BsiHKAI	GWGCWC	1 cut(s)	985
BsiSI	CCGG	1 cut(s)	289
BslI	CCNNNNNNNGG	5 cut(s)	481, 1127, 1207, 1229, 1302
BsmAI	GTCTC	3 cut(s)	11, 161, 1213
BsnI	GGCC	4 cut(s)	327, 644, 996, 1255
Bso31I	GGTCTC	1 cut(s)	1213
Bsp1286I	GDGCHC	1 cut(s)	985
Bsp1407I	TGTACA	1 cut(s)	139
Bsp143I	GATC	2 cut(s)	811, 1021
Bsp68I	TCGCGA	1 cut(s)	1074
BspACI	CCGC	2 cut(s)	759, 1121
BspANI	GGCC	4 cut(s)	327, 644, 996, 1255
BspCNI	CTCAG	3 cut(s)	418, 766, 1278
BspFNI	CGCG	1 cut(s)	1074
BspLI	GGNNCC	2 cut(s)	563, 1023
BspMAI	CTGCAG	1 cut(s)	978
BspPI	GGATC	2 cut(s)	1016, 1029
BspQI	GCTCTTC	1 cut(s)	560
BspTNI	GGTCTC	1 cut(s)	1213
BsrDI	GCAATG	2 cut(s)	376, 1290
BsrGI	TGTACA	1 cut(s)	139
BsrI	ACTGG	4 cut(s)	50, 85, 650, 691
BssMI	GATC	2 cut(s)	811, 1021
Bst2UI	CCWGG	1 cut(s)	1202
Bst4CI	ACNGT	4 cut(s)	776, 1106, 1172, 1355
Bst6I	CTCTTC	4 cut(s)	9, 414, 560, 1317
BstAUI	TGTACA	1 cut(s)	139
BstC8I	GCNNGC	2 cut(s)	994, 1426
BstDEI	CTNAG	5 cut(s)	405, 753, 852, 897, 1286
BstENI	CCTNNNNNAGG	1 cut(s)	1227
BstF5I	GGATG	5 cut(s)	397, 704, 910, 1025, 1037
BstFNI	CGCG	1 cut(s)	1074
BstH2I	RGCGCY	1 cut(s)	475
BstHHI	GCGC	1 cut(s)	474
BstKTI	GATC	2 cut(s)	814, 1024
BstMAI	GTCTC	3 cut(s)	11, 161, 1213
BstMBI	GATC	2 cut(s)	811, 1021
BstMWI	GCNNNNNNNGC	3 cut(s)	559, 989, 1478
BstNI	CCWGG	1 cut(s)	1202
BstNSI	RCATGY	1 cut(s)	1428
BstSCI	CCNGG	1 cut(s)	1200
BstSFI	CTRYAG	1 cut(s)	974
BstUI	CGCG	1 cut(s)	1074
BstX2I	RGATCY	1 cut(s)	1021
BstYI	RGATCY	1 cut(s)	1021
BsuI	GTATCC	1 cut(s)	853
BsuRI	GGCC	4 cut(s)	327, 644, 996, 1255
BtsCI	GGATG	5 cut(s)	397, 704, 910, 1025, 1037
BtsIMutI	CAGTG	1 cut(s)	1351
BtuMI	TCGCGA	1 cut(s)	1074
Cac8I	GCNNGC	2 cut(s)	994, 1426
CfoI	GCGC	1 cut(s)	474
Cfr13I	GGNCC	3 cut(s)	208, 599, 1253
Csp6I	GTAC	3 cut(s)	140, 684, 1107
CviAII	CATG	4 cut(s)	115, 212, 535, 1425
CviQI	GTAC	3 cut(s)	140, 684, 1107
DdeI	CTNAG	5 cut(s)	405, 753, 852, 897, 1286
DpnI	GATC	2 cut(s)	813, 1023
DpnII	GATC	2 cut(s)	811, 1021
Eam1104I	CTCTTC	4 cut(s)	9, 414, 560, 1317
EarI	CTCTTC	4 cut(s)	9, 414, 560, 1317
Ecl136II	GAGCTC	1 cut(s)	983
Eco147I	AGGCCT	2 cut(s)	327, 644
Eco24I	GRGCYC	1 cut(s)	985
Eco31I	GGTCTC	1 cut(s)	1213
Eco32I	GATATC	1 cut(s)	175
Eco47I	GGWCC	2 cut(s)	208, 599
Eco53kI	GAGCTC	1 cut(s)	983
Eco57I	CTGAAG	2 cut(s)	435, 541
EcoICRI	GAGCTC	1 cut(s)	983
EcoNI	CCTNNNNNAGG	1 cut(s)	1227
EcoRII	CCWGG	1 cut(s)	1200
EcoRV	GATATC	1 cut(s)	175
EcoT22I	ATGCAT	2 cut(s)	1036, 1426
EcoT38I	GRGCYC	1 cut(s)	985
FaeI	CATG	4 cut(s)	118, 215, 538, 1428
FatI	CATG	4 cut(s)	114, 211, 534, 1424
FbaI	TGATCA	1 cut(s)	811
FokI	GGATG	5 cut(s)	404, 711, 917, 1012, 1024
FriOI	GRGCYC	1 cut(s)	985
FspBI	CTAG	7 cut(s)	435, 762, 867, 912, 1010, 1055, 1473
GlaI	GCGC	1 cut(s)	473
GsaI	CCCAGC	1 cut(s)	596
GsuI	CTGGAG	1 cut(s)	633
HaeII	RGCGCY	1 cut(s)	475
HaeIII	GGCC	4 cut(s)	327, 644, 996, 1255
HapII	CCGG	1 cut(s)	289
HhaI	GCGC	1 cut(s)	474
Hin1II	CATG	4 cut(s)	118, 215, 538, 1428
Hin6I	GCGC	1 cut(s)	472
HinP1I	GCGC	1 cut(s)	472
HincII	GTYRAC	1 cut(s)	1316
HindII	GTYRAC	1 cut(s)	1316
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	3 cut(s)	95, 400, 671
HpaII	CCGG	1 cut(s)	289
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	3 cut(s)	140, 1316, 1403
Hpy188I	TCNGA	8 cut(s)	253, 415, 835, 1042, 1183, 1238, 1287, 1420
Hpy8I	GTNNAC	3 cut(s)	140, 1316, 1403
HpyAV	CCTTC	5 cut(s)	104, 258, 624, 634, 1450
HpyCH4III	ACNGT	4 cut(s)	776, 1106, 1172, 1355
HpyCH4IV	ACGT	2 cut(s)	79, 1318
HpyCH4V	TGCA	7 cut(s)	369, 381, 830, 976, 992, 1034, 1424
HpyF10VI	GCNNNNNNNGC	3 cut(s)	559, 989, 1478
HpyF3I	CTNAG	5 cut(s)	405, 753, 852, 897, 1286
HpySE526I	ACGT	2 cut(s)	79, 1318
Hsp92II	CATG	4 cut(s)	118, 215, 538, 1428
HspAI	GCGC	1 cut(s)	472
Ksp22I	TGATCA	1 cut(s)	811
Kzo9I	GATC	2 cut(s)	811, 1021
LguI	GCTCTTC	1 cut(s)	560
LmnI	GCTCC	2 cut(s)	567, 691
LweI	GCATC	6 cut(s)	839, 895, 979, 1043, 1187, 1411
MaeI	CTAG	7 cut(s)	435, 762, 867, 912, 1010, 1055, 1473
MaeII	ACGT	2 cut(s)	79, 1318
MaeIII	GTNAC	1 cut(s)	437
MalI	GATC	2 cut(s)	813, 1023
MboI	GATC	2 cut(s)	811, 1021
MboII	GAAGA	9 cut(s)	26, 41, 232, 428, 431, 547, 1251, 1334, 1444
MfeI	CAATTG	1 cut(s)	1371
MflI	RGATCY	1 cut(s)	1021
MhlI	GDGCHC	1 cut(s)	985
MlyI	GAGTC	2 cut(s)	104, 680
MmeI	TCCRAC	1 cut(s)	1258
Mph1103I	ATGCAT	2 cut(s)	1036, 1426
MseI	TTAA	7 cut(s)	42, 513, 531, 654, 719, 726, 1187
MslI	CAYNNNNRTG	1 cut(s)	825
MspA1I	CMGCKG	1 cut(s)	596
MspI	CCGG	1 cut(s)	289
MspR9I	CCNGG	1 cut(s)	1202
MunI	CAATTG	1 cut(s)	1371
MvaI	CCWGG	1 cut(s)	1202
MvnI	CGCG	1 cut(s)	1074
MwoI	GCNNNNNNNGC	3 cut(s)	559, 989, 1478
NdeII	GATC	2 cut(s)	811, 1021
NlaIII	CATG	4 cut(s)	118, 215, 538, 1428
NlaIV	GGNNCC	2 cut(s)	563, 1023
NruI	TCGCGA	1 cut(s)	1074
NsiI	ATGCAT	2 cut(s)	1036, 1426
NspI	RCATGY	1 cut(s)	1428
PaeI	GCATGC	1 cut(s)	1428
PceI	AGGCCT	2 cut(s)	327, 644
PciSI	GCTCTTC	1 cut(s)	560
PfeI	GAWTC	1 cut(s)	400
PflMI	CCANNNNNTGG	1 cut(s)	481
PleI	GAGTC	2 cut(s)	103, 679
PpsI	GAGTC	2 cut(s)	103, 679
Psp124BI	GAGCTC	1 cut(s)	985
Psp6I	CCWGG	1 cut(s)	1200
PspFI	CCCAGC	1 cut(s)	592
PspGI	CCWGG	1 cut(s)	1200
PspN4I	GGNNCC	2 cut(s)	563, 1023
PspPI	GGNCC	3 cut(s)	208, 599, 1253
PstI	CTGCAG	1 cut(s)	978
PsuI	RGATCY	1 cut(s)	1021
PvuII	CAGCTG	1 cut(s)	596
RruI	TCGCGA	1 cut(s)	1074
RsaI	GTAC	3 cut(s)	141, 685, 1108
RsaNI	GTAC	3 cut(s)	140, 684, 1107
RseI	CAYNNNNRTG	1 cut(s)	825
SacI	GAGCTC	1 cut(s)	985
SapI	GCTCTTC	1 cut(s)	560
SaqAI	TTAA	7 cut(s)	42, 513, 531, 654, 719, 726, 1187
Sau3AI	GATC	2 cut(s)	811, 1021
Sau96I	GGNCC	3 cut(s)	208, 599, 1253
ScaI	AGTACT	1 cut(s)	1108
SchI	GAGTC	2 cut(s)	104, 680
ScrFI	CCNGG	1 cut(s)	1202
SduI	GDGCHC	1 cut(s)	985
SfaNI	GCATC	6 cut(s)	839, 895, 979, 1043, 1187, 1411
SfcI	CTRYAG	1 cut(s)	974
SinI	GGWCC	2 cut(s)	208, 599
SmiMI	CAYNNNNRTG	1 cut(s)	825
SmlI	CTYRAG	1 cut(s)	984
SmoI	CTYRAG	1 cut(s)	984
SphI	GCATGC	1 cut(s)	1428
SseBI	AGGCCT	2 cut(s)	327, 644
SsiI	CCGC	2 cut(s)	759, 1121
SspI	AATATT	1 cut(s)	480
SspMI	CTAG	7 cut(s)	435, 762, 867, 912, 1010, 1055, 1473
SstI	GAGCTC	1 cut(s)	985
StuI	AGGCCT	2 cut(s)	327, 644
StyD4I	CCNGG	1 cut(s)	1200
TaaI	ACNGT	4 cut(s)	776, 1106, 1172, 1355
TaiI	ACGT	2 cut(s)	82, 1321
TatI	WGTACW	2 cut(s)	139, 1106
TfiI	GAWTC	1 cut(s)	400
Tru1I	TTAA	7 cut(s)	42, 513, 531, 654, 719, 726, 1187
Tru9I	TTAA	7 cut(s)	42, 513, 531, 654, 719, 726, 1187
TscAI	CASTG	1 cut(s)	1358
TspDTI	ATGAA	3 cut(s)	228, 513, 1469
TspRI	CASTG	1 cut(s)	1358
Van91I	CCANNNNNTGG	1 cut(s)	481
VpaK11BI	GGWCC	2 cut(s)	208, 599
XagI	CCTNNNNNAGG	1 cut(s)	1227
XapI	RAATTY	2 cut(s)	580, 1435
XbaI	TCTAGA	2 cut(s)	866, 911
XceI	RCATGY	1 cut(s)	1428
XcmI	CCANNNNNNNNNTGG	1 cut(s)	625
XspI	CTAG	7 cut(s)	435, 762, 867, 912, 1010, 1055, 1473
ZrmI	AGTACT	1 cut(s)	1108
Zsp2I	ATGCAT	2 cut(s)	1036, 1426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.