Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002843

Physical Location & Seq

Genomic Coordinates Reverse (-)

41807313 .. 41808472

Gene Structure 1160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0336200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGAGTTCATAAACCAGGTGCACTCTAAATGTGTTTGTCTGTGCTTGATCCTCATATTCGGGGCTTGGTCTTCTGAAGCCACCTCTCGGAATCTTGAAGATGCAGCCATGTATGAGAGATACGAGCAATGGATGACTCGTTATGGACGCCAATACAGCAGCATGAATGAGAAGGAGACTCGCTTCAATGTATTCAAGAAAAATGTGGCAATGATTGATTCTTCGAATAGCGATGTAAACAAACCATACAAATTGAGCGTCAATCAATTTGCAGACCTTACAACTGAAGAATTCAAAGCCCAAAGGACTGGATTCAAGGGTCTTCGGGATACCCCACCACCGACTACTTCTTTCAAGTACGAAAATGTTAGCATAGTGCCATCTTCACTAGACTGGAGAACGAAAGGAGCTGTAATGCCTGTCAAGGATCAAGGCCAATGTGGAAGCTGTTGGGCTTTCGCAACAGTGGGAGCCTTGGAAGGAGCTCTTCAGCTTGCTACTGGTGAACTAGTCTCTATGTCCGAGCAAGAGTTGGTTGACTGTAACGTCGGAGGTGAGAATGAAGGCTGTATGGGTGGCTACCCCGATGTTGCCTTTCTGTACATCATAGAAAAGCACGGGCTTACAAACGAGGCTAATTATCCCTATACTGCTACTGATAATATGTGCAATACTACAGAGGCAGACAGCCCTTCAGGTAGCATAACCGGCTACGAAGATGTGCCTGTAAACAGTGAACAGGACCTTCTCAAGGCTGTTGCTAATCAACCTGTATCCGTTTGCATTCAAGCTGAGGGAGCATTCGAATACTATTCATCTGGTGTGTTGACAGGATATTGTGGAACGGACCTCGACCATTGTGTTACCGCTATTGGTTACGGAACAACTGATGAGGGGATCGATTATTGGTTGCTGAAAAACTCATGGGGCACAGAATGGGGTGAAGAAGGCTACGTTAGGATACAAAGAAATATAGAGGCTGTGGAAGGAATGTGTGGCATTGCTACGTCAGCCTCTTATGCTACTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH RRM_1

Protein Analysis

343

Amino Acids

37.78

Weight (kDa)

4.46

Isoelectric Point (pI)

30.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	41 - 98	9.7e-19	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	126 - 341	2.6e-77	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15605 AT3G15605 AT3G15605 AT3G15605
fragaria_vesca	FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540
malus_domestica	MD09G1219000.v1.1
prunus_persica	Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1
pyrus_communis	pycom09g13690
rosa_chinensis	RchiOBHm_Chr2g0136961
rosa_laevigata	RLG00000019591
rosa_multiflora	Rmu_co8420089.1_g000001 Rmu_sc0001374.1_g000069
rosa_roxburghii	Rroxscaffold_2G00107840 Rroxscaffold_2G00107850
rosa_rugosa	Rorug02G0335700 Rorug02G0335800 Rorug02G0335900 Rorug02G0336000 Rorug02G0336100 Rorug02G0336200
rosa_samantha	Rh2AG385600 Rh2BG392600 Rh2CG372800 Rh2DG408700
rosa_wichuraiana	Rw2G031540 Rw2G031550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	545
AciI	CCGC	1 cut(s)	867
AclWI	GGATC	3 cut(s)	43, 435, 905
AcsI	RAATTY	1 cut(s)	290
AcuI	CTGAAG	4 cut(s)	96, 306, 473, 678
AcyI	GRCGYC	1 cut(s)	148
AfaI	GTAC	2 cut(s)	359, 602
AfiI	CCNNNNNNNGG	2 cut(s)	87, 751
AgsI	TTSAA	7 cut(s)	98, 187, 196, 295, 316, 355, 788
AhlI	ACTAGT	1 cut(s)	508
AjnI	CCWGG	1 cut(s)	15
AluBI	AGCT	5 cut(s)	410, 447, 485, 493, 791
AluI	AGCT	5 cut(s)	410, 447, 485, 493, 791
Alw21I	GWGCWC	2 cut(s)	24, 487
Alw26I	GTCTC	2 cut(s)	170, 517
Alw44I	GTGCAC	1 cut(s)	20
AlwI	GGATC	3 cut(s)	43, 435, 905
AoxI	GGCC	1 cut(s)	433
ApaLI	GTGCAC	1 cut(s)	20
ApeKI	GCWGC	2 cut(s)	104, 159
ApoI	RAATTY	1 cut(s)	290
ArsI	GACNNNNNNTTYG	2 cut(s)	243, 275
AspS9I	GGNCC	2 cut(s)	742, 847
AsuHPI	GGTGA	3 cut(s)	515, 566, 953
AsuII	TTCGAA	2 cut(s)	224, 804
AvaII	GGWCC	2 cut(s)	742, 847
BaeGI	GKGCMC	2 cut(s)	24, 932
BanII	GRGCYC	1 cut(s)	487
BbsI	GAAGAC	2 cut(s)	63, 314
Bbv12I	GWGCWC	2 cut(s)	24, 487
BbvCI	CCTCAGC	1 cut(s)	792
BbvI	GCAGC	2 cut(s)	116, 171
BccI	CCATC	1 cut(s)	388
BciT130I	CCWGG	1 cut(s)	17
BciVI	GTATCC	3 cut(s)	322, 784, 954
BcoDI	GTCTC	2 cut(s)	170, 517
BcuI	ACTAGT	1 cut(s)	508
BfaI	CTAG	2 cut(s)	389, 509
BfmI	CTRYAG	1 cut(s)	675
BfuI	GTATCC	3 cut(s)	322, 784, 954
BisI	GCNGC	2 cut(s)	105, 160
BlsI	GCNGC	2 cut(s)	106, 161
Bme1390I	CCNGG	1 cut(s)	17
Bme18I	GGWCC	2 cut(s)	742, 847
BmgT120I	GGNCC	2 cut(s)	742, 847
BmiI	GGNNCC	1 cut(s)	472
BmrFI	CCNGG	1 cut(s)	17
BmsI	GCATC	1 cut(s)	91
BpiI	GAAGAC	2 cut(s)	63, 314
BpmI	CTGGAG	1 cut(s)	415
Bpu10I	CCTNAGC	1 cut(s)	792
Bpu14I	TTCGAA	2 cut(s)	224, 804
BpuEI	CTTGAG	1 cut(s)	734
Bsa29I	ATCGAT	1 cut(s)	900
BsaHI	GRCGYC	1 cut(s)	148
BsaJI	CCNNGG	1 cut(s)	474
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 751
Bse118I	RCCGGY	1 cut(s)	707
Bse1I	ACTGG	3 cut(s)	313, 398, 505
Bse3DI	GCAATG	3 cut(s)	134, 216, 999
BseBI	CCWGG	1 cut(s)	17
BseCI	ATCGAT	1 cut(s)	900
BseDI	CCNNGG	1 cut(s)	474
BseGI	GGATG	1 cut(s)	138
BseLI	CCNNNNNNNGG	2 cut(s)	87, 751
BseMI	GCAATG	3 cut(s)	134, 216, 999
BseMII	CTCAG	1 cut(s)	783
BseNI	ACTGG	3 cut(s)	313, 398, 505
BseSI	GKGCMC	2 cut(s)	24, 932
BseXI	GCAGC	2 cut(s)	116, 171
BshFI	GGCC	1 cut(s)	435
BshVI	ATCGAT	1 cut(s)	900
BsiHKAI	GWGCWC	2 cut(s)	24, 487
BsiSI	CCGG	1 cut(s)	708
BslI	CCNNNNNNNGG	2 cut(s)	87, 751
BsmAI	GTCTC	2 cut(s)	170, 517
BsmI	GAATGC	2 cut(s)	783, 800
BsnI	GGCC	1 cut(s)	435
Bsp119I	TTCGAA	2 cut(s)	224, 804
Bsp1286I	GDGCHC	3 cut(s)	24, 487, 932
Bsp1407I	TGTACA	1 cut(s)	600
Bsp143I	GATC	3 cut(s)	48, 427, 897
BspACI	CCGC	1 cut(s)	867
BspANI	GGCC	1 cut(s)	435
BspCNI	CTCAG	1 cut(s)	784
BspDI	ATCGAT	1 cut(s)	900
BspLI	GGNNCC	1 cut(s)	472
BspPI	GGATC	3 cut(s)	43, 435, 905
BspQI	GCTCTTC	1 cut(s)	492
BspT104I	TTCGAA	2 cut(s)	224, 804
BsrDI	GCAATG	3 cut(s)	134, 216, 999
BsrFI	RCCGGY	1 cut(s)	707
BsrGI	TGTACA	1 cut(s)	600
BsrI	ACTGG	3 cut(s)	313, 398, 505
BssAI	RCCGGY	1 cut(s)	707
BssECI	CCNNGG	1 cut(s)	474
BssMI	GATC	3 cut(s)	48, 427, 897
BssNI	GRCGYC	1 cut(s)	148
BssT1I	CCWWGG	1 cut(s)	474
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	4 cut(s)	466, 542, 734, 1027
Bst6I	CTCTTC	1 cut(s)	492
BstACI	GRCGYC	1 cut(s)	148
BstAUI	TGTACA	1 cut(s)	600
BstBI	TTCGAA	2 cut(s)	224, 804
BstC8I	GCNNGC	1 cut(s)	495
BstDEI	CTNAG	1 cut(s)	792
BstENI	CCTNNNNNAGG	1 cut(s)	749
BstF5I	GGATG	1 cut(s)	138
BstKTI	GATC	3 cut(s)	51, 430, 900
BstMAI	GTCTC	2 cut(s)	170, 517
BstMBI	GATC	3 cut(s)	48, 427, 897
BstMWI	GCNNNNNNNGC	5 cut(s)	156, 708, 797, 1010, 1019
BstNI	CCWGG	1 cut(s)	17
BstSCI	CCNGG	1 cut(s)	15
BstSFI	CTRYAG	1 cut(s)	675
BstSLI	GKGCMC	2 cut(s)	24, 932
BstV1I	GCAGC	2 cut(s)	116, 171
BstV2I	GAAGAC	2 cut(s)	63, 314
BstXI	CCANNNNNNTGG	1 cut(s)	308
Bsu15I	ATCGAT	1 cut(s)	900
BsuI	GTATCC	3 cut(s)	322, 784, 954
BsuRI	GGCC	1 cut(s)	435
BsuTUI	ATCGAT	1 cut(s)	900
BtgZI	GCGATG	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	138
BtsIMutI	CAGTG	2 cut(s)	471, 739
Cac8I	GCNNGC	1 cut(s)	495
Cfr10I	RCCGGY	1 cut(s)	707
Cfr13I	GGNCC	2 cut(s)	742, 847
ClaI	ATCGAT	1 cut(s)	900
CseI	GACGC	2 cut(s)	156, 247
CsiI	ACCWGGT	1 cut(s)	15
Csp6I	GTAC	2 cut(s)	358, 601
CviAII	CATG	3 cut(s)	109, 163, 924
CviQI	GTAC	2 cut(s)	358, 601
DdeI	CTNAG	1 cut(s)	792
DpnI	GATC	3 cut(s)	50, 429, 899
DpnII	GATC	3 cut(s)	48, 427, 897
DrdI	GACNNNNNNGTC	1 cut(s)	545
DseDI	GACNNNNNNGTC	1 cut(s)	545
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
Ecl136II	GAGCTC	1 cut(s)	485
Eco130I	CCWWGG	1 cut(s)	474
Eco24I	GRGCYC	1 cut(s)	487
Eco47I	GGWCC	2 cut(s)	742, 847
Eco53kI	GAGCTC	1 cut(s)	485
Eco57I	CTGAAG	4 cut(s)	96, 306, 473, 678
EcoICRI	GAGCTC	1 cut(s)	485
EcoNI	CCTNNNNNAGG	1 cut(s)	749
EcoO109I	RGGNCCY	1 cut(s)	742
EcoRI	GAATTC	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	474
EcoT38I	GRGCYC	1 cut(s)	487
ErhI	CCWWGG	1 cut(s)	474
FaeI	CATG	3 cut(s)	112, 166, 927
FalI	AAGNNNNNCTT	2 cut(s)	471, 503
FatI	CATG	3 cut(s)	108, 162, 923
Fnu4HI	GCNGC	2 cut(s)	105, 160
FokI	GGATG	1 cut(s)	145
FriOI	GRGCYC	1 cut(s)	487
Fsp4HI	GCNGC	2 cut(s)	105, 160
FspBI	CTAG	2 cut(s)	389, 509
GluI	GCNGC	2 cut(s)	105, 160
GsuI	CTGGAG	1 cut(s)	415
HaeIII	GGCC	1 cut(s)	435
HapII	CCGG	1 cut(s)	708
HgaI	GACGC	2 cut(s)	156, 247
Hin1I	GRCGYC	1 cut(s)	148
Hin1II	CATG	3 cut(s)	112, 166, 927
HincII	GTYRAC	2 cut(s)	538, 828
HindII	GTYRAC	2 cut(s)	538, 828
HinfI	GANTC	5 cut(s)	91, 136, 178, 218, 312
HpaII	CCGG	1 cut(s)	708
HphI	GGTGA	3 cut(s)	515, 566, 953
Hpy166II	GTNNAC	7 cut(s)	22, 238, 506, 538, 730, 737, 828
Hpy188I	TCNGA	4 cut(s)	76, 90, 523, 551
Hpy188III	TCNNGA	3 cut(s)	95, 196, 326
Hpy8I	GTNNAC	7 cut(s)	22, 238, 506, 538, 730, 737, 828
Hpy99I	CGWCG	1 cut(s)	551
HpyAV	CCTTC	7 cut(s)	166, 473, 557, 702, 755, 941, 980
HpyCH4III	ACNGT	4 cut(s)	466, 542, 734, 1027
HpyCH4IV	ACGT	3 cut(s)	546, 954, 1007
HpyCH4V	TGCA	5 cut(s)	22, 104, 272, 669, 783
HpyF10VI	GCNNNNNNNGC	5 cut(s)	156, 708, 797, 1010, 1019
HpyF3I	CTNAG	1 cut(s)	792
HpySE526I	ACGT	3 cut(s)	546, 954, 1007
Hsp92I	GRCGYC	1 cut(s)	148
Hsp92II	CATG	3 cut(s)	112, 166, 927
Kzo9I	GATC	3 cut(s)	48, 427, 897
LguI	GCTCTTC	1 cut(s)	492
LmnI	GCTCC	4 cut(s)	407, 470, 482, 797
Lsp1109I	GCAGC	2 cut(s)	116, 171
LweI	GCATC	1 cut(s)	91
MabI	ACCWGGT	1 cut(s)	15
MaeI	CTAG	2 cut(s)	389, 509
MaeII	ACGT	3 cut(s)	546, 954, 1007
MaeIII	GTNAC	3 cut(s)	542, 862, 875
MalI	GATC	3 cut(s)	50, 429, 899
MboI	GATC	3 cut(s)	48, 427, 897
MboII	GAAGA	9 cut(s)	63, 110, 213, 299, 314, 375, 479, 728, 956
MhlI	GDGCHC	3 cut(s)	24, 487, 932
MluCI	AATT	4 cut(s)	251, 266, 290, 637
MlyI	GAGTC	2 cut(s)	130, 172
MmeI	TCCRAC	1 cut(s)	529
MspI	CCGG	1 cut(s)	708
MspR9I	CCNGG	1 cut(s)	17
Mva1269I	GAATGC	2 cut(s)	783, 800
MvaI	CCWGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	5 cut(s)	156, 708, 797, 1010, 1019
NdeII	GATC	3 cut(s)	48, 427, 897
NlaIII	CATG	3 cut(s)	112, 166, 927
NlaIV	GGNNCC	1 cut(s)	472
NspV	TTCGAA	2 cut(s)	224, 804
PciSI	GCTCTTC	1 cut(s)	492
PctI	GAATGC	2 cut(s)	783, 800
PfeI	GAWTC	3 cut(s)	91, 218, 312
PkrI	GCNGC	2 cut(s)	106, 161
PleI	GAGTC	2 cut(s)	130, 172
PpsI	GAGTC	2 cut(s)	130, 172
PpuMI	RGGWCCY	1 cut(s)	742
Psp124BI	GAGCTC	1 cut(s)	487
Psp5II	RGGWCCY	1 cut(s)	742
Psp6I	CCWGG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	472
PspPI	GGNCC	2 cut(s)	742, 847
PspPPI	RGGWCCY	1 cut(s)	742
RsaI	GTAC	2 cut(s)	359, 602
RsaNI	GTAC	2 cut(s)	358, 601
SacI	GAGCTC	1 cut(s)	487
SapI	GCTCTTC	1 cut(s)	492
SatI	GCNGC	2 cut(s)	105, 160
Sau3AI	GATC	3 cut(s)	48, 427, 897
Sau96I	GGNCC	2 cut(s)	742, 847
SchI	GAGTC	2 cut(s)	130, 172
ScrFI	CCNGG	1 cut(s)	17
SduI	GDGCHC	3 cut(s)	24, 487, 932
SexAI	ACCWGGT	1 cut(s)	15
SfaNI	GCATC	1 cut(s)	91
SfcI	CTRYAG	1 cut(s)	675
SfuI	TTCGAA	2 cut(s)	224, 804
SinI	GGWCC	2 cut(s)	742, 847
SmlI	CTYRAG	1 cut(s)	749
SmoI	CTYRAG	1 cut(s)	749
SpeI	ACTAGT	1 cut(s)	508
Sse9I	AATT	4 cut(s)	251, 266, 290, 637
SsiI	CCGC	1 cut(s)	867
SspMI	CTAG	2 cut(s)	389, 509
SstI	GAGCTC	1 cut(s)	487
StyD4I	CCNGG	1 cut(s)	15
StyI	CCWWGG	1 cut(s)	474
TaaI	ACNGT	4 cut(s)	466, 542, 734, 1027
TaiI	ACGT	3 cut(s)	549, 957, 1010
TaqI	TCGA	4 cut(s)	224, 804, 852, 900
TasI	AATT	4 cut(s)	251, 266, 290, 637
TatI	WGTACW	1 cut(s)	600
TfiI	GAWTC	3 cut(s)	91, 218, 312
TscAI	CASTG	2 cut(s)	471, 739
TseI	GCWGC	2 cut(s)	104, 159
TspDTI	ATGAA	3 cut(s)	179, 576, 804
TspGWI	ACGGA	3 cut(s)	766, 860, 894
TspRI	CASTG	2 cut(s)	471, 739
VneI	GTGCAC	1 cut(s)	20
VpaK11BI	GGWCC	2 cut(s)	742, 847
XagI	CCTNNNNNAGG	1 cut(s)	749
XapI	RAATTY	1 cut(s)	290
XspI	CTAG	2 cut(s)	389, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.