RLG00000019591

BAH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002843
Physical Location & Seq
Reverse (-)
53978600 .. 53986811
8212 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019591

Sequence Viewer

Length: 1503 bp
ATGTTGCATCCTGAAAAGATGAATATGGAACAAGATTCTGAATTTAAGTGGGGTGAAAGACTTGGAGTTGGTAGGACAAACAAGGATGTCCAGTTCTACCAGTCTTTCACATTTCAGGGCGTGGAGTACTCCCTGTATGATTCCATACACCTCTACAGGACTGGCGCTTTGGAAACAGATATTGGTAAGATTATCAAAATATATTCCACAGCAACTGAAAAGAAGGTTAGGATTGTGTGGTTTCTTCGGCCAGCTGAAATATGCAACTTTTTGGGTGATTATGAACCACACTGGAAAGAGATTTTTTTAGCTTCTGGCGAGGGTACAGGCCTCTCCAATCTGAATCCTCTTGAAGCAATTGTTGGAAAGTGTAATGTTGTCTGCTTATCAAAGGATACAAGGAATCCTCGTCCCTCTAAAGAAGAGTTGAGAACGGCCAACTACATTTTCCATCGTACTTTTGACGTTGACAGGCGCAAAATATTGCAGAAGTTTCCAGATCAAATATATGGAATTAAAGTGGAGAAATATTTTAACAGGCGAAAACAGCAAAGCCTCACCAGGATGGACCAAGCTGGACCATCAAATGTGCCTTCCAATTCACAATTGGACAAAGTGGTGGCATATCCAGTTAAAAATGGCAAGCCTAGTAGCAAATCAATCCCTATAGTCAAAGAATCGGAGAATCGGACTCGTCCAGAATTGAGAGACCAAGCTAGACCATCAAGTGTGCCTTCCAGTTCACAATTAAGCACAGCGGTGTCGTGTCCACTCCTGAATGGTAAGCCTAGCAGCAAAGTGGTCCCAATAGTGGAAGTTAAAAGAAATACAGTGGACCCTTTACTACCACCTGTGAGCACACCAGATACCCGTCCTTATAAGAAGATGAGAACTGCAGATGGTAGACCGCCAGATATTGATAAGAGTGGTTGGTTCAAGCCAGGATTTTGGGAGGAAAGACTGCGGACAGCTGAAGGTAATGGCACCTTGGTCCTGCTAGACAATCTAGATCCATCCTTTACATCCTCCGAAGTACAGGATCTAGTTTGGACTGCATTCAAGCAGATGGTTGAGGCAAAAATGATACCATGCACTCCTTTTTCTAATCCACGCTATGGAAAGGCTTTTGTTATATTTAAGTCATCAGATGATGCTAAGTCTGCTATAGTTGAGTTAAATAGGAGATGCCTGACTCTGGCAGATGGGAGACCTGTCATCGGTACCATCTGCAGAGGGACTCTAAAAGTGCCTGACAAAACATCTAGATTTTTTGGACATCTGATGATTGACAAACATCGGCTTAAAACCCAACGTGAAGAGATGAGAAAAGCAGTATCAACGTCGCACTTTGCTCAGCCCAATACAGTTGAGTATGATATGGCAATGGACTGGTGTTTACTGCAGGAAAGGTCAGATTTGTGGTGGAAGGCTTTATATCAGGGCCATGAGGAAGAAGAGAAGGAGATAAAGAAGTTGGGAGAGCAAAAGGTCAAGTTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH RRM_1

Protein Analysis

501

Amino Acids

57.24

Weight (kDa)

9.25

Isoelectric Point (pI)

40.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 58 - 162 5.6e-07 BAH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 879
Acc65I GGTACC 1 cut(s) 1220
AccB1I GGYRCC 2 cut(s) 983, 1220
AccB7I CCANNNNNTGG 1 cut(s) 1115
AccI GTMKAC 1 cut(s) 904
AciI CCGC 3 cut(s) 758, 908, 964
AclWI GGATC 2 cut(s) 1004, 1047
AcoI YGGCCR 2 cut(s) 248, 435
AcsI RAATTY 1 cut(s) 41
AcuI CTGAAG 1 cut(s) 993
AfaI GTAC 5 cut(s) 128, 325, 457, 1035, 1222
AfiI CCNNNNNNNGG 4 cut(s) 811, 1115, 1195, 1217
AgsI TTSAA 3 cut(s) 353, 937, 1060
AjnI CCWGG 2 cut(s) 560, 940
AjuI GAANNNNNNNTTGG 6 cut(s) 165, 197, 345, 377, 431, 463
AleI CACNNNNGTG 1 cut(s) 758
AloI GAACNNNNNNTCC 2 cut(s) 77, 109
AluBI AGCT 5 cut(s) 254, 311, 575, 716, 971
AluI AGCT 5 cut(s) 254, 311, 575, 716, 971
Alw21I GWGCWC 1 cut(s) 860
Alw26I GTCTC 2 cut(s) 702, 1201
AlwI GGATC 2 cut(s) 1004, 1047
AlwNI CAGNNNCTG 1 cut(s) 215
AoxI GGCC 4 cut(s) 248, 328, 435, 1441
ApeKI GCWGC 1 cut(s) 792
ApoI RAATTY 1 cut(s) 41
ArsI GACNNNNNNTTYG 2 cut(s) 151, 183
Asp718I GGTACC 1 cut(s) 1220
AspLEI GCGC 2 cut(s) 167, 477
AspS9I GGNCC 6 cut(s) 568, 578, 802, 835, 991, 1441
AsuHPI GGTGA 3 cut(s) 65, 287, 550
AvaII GGWCC 5 cut(s) 568, 578, 802, 835, 991
BanI GGYRCC 2 cut(s) 983, 1220
Bbv12I GWGCWC 1 cut(s) 860
BbvI GCAGC 1 cut(s) 804
BccI CCATC 9 cut(s) 459, 559, 589, 730, 893, 1021, 1060, 1196, 1232
BceAI ACGGC 1 cut(s) 450
BciT130I CCWGG 2 cut(s) 562, 942
BciVI GTATCC 1 cut(s) 388
BcoDI GTCTC 2 cut(s) 702, 1201
BfaI CTAG 7 cut(s) 648, 717, 789, 998, 1007, 1043, 1263
BfmI CTRYAG 6 cut(s) 154, 666, 894, 1164, 1228, 1400
BfoI RGCGCY 1 cut(s) 168
BfuI GTATCC 1 cut(s) 388
BisI GCNGC 1 cut(s) 793
BlpI GCTNAGC 1 cut(s) 1353
BlsI GCNGC 1 cut(s) 794
BmcAI AGTACT 1 cut(s) 128
Bme1390I CCNGG 2 cut(s) 562, 942
Bme18I GGWCC 5 cut(s) 568, 578, 802, 835, 991
BmgT120I GGNCC 6 cut(s) 568, 578, 802, 835, 991, 1441
BmiI GGNNCC 4 cut(s) 804, 837, 985, 1222
BmrFI CCNGG 2 cut(s) 562, 942
BmsI GCATC 3 cut(s) 16, 1141, 1175
Bpu1102I GCTNAGC 1 cut(s) 1353
BsaI GGTCTC 2 cut(s) 702, 1201
BsaJI CCNNGG 1 cut(s) 987
Bsc4I CCNNNNNNNGG 4 cut(s) 811, 1115, 1195, 1217
Bse1I ACTGG 7 cut(s) 91, 100, 166, 296, 629, 738, 1394
Bse3DI GCAATG 1 cut(s) 1389
BseBI CCWGG 2 cut(s) 562, 942
BseDI CCNNGG 1 cut(s) 987
BseGI GGATG 5 cut(s) 7, 91, 570, 1013, 1022
BseLI CCNNNNNNNGG 4 cut(s) 811, 1115, 1195, 1217
BseMI GCAATG 1 cut(s) 1389
BseMII CTCAG 1 cut(s) 1367
BseNI ACTGG 7 cut(s) 91, 100, 166, 296, 629, 738, 1394
BseXI GCAGC 1 cut(s) 804
BshFI GGCC 4 cut(s) 250, 330, 437, 1443
BshNI GGYRCC 2 cut(s) 983, 1220
BsiHKAI GWGCWC 1 cut(s) 860
BslFI GGGAC 3 cut(s) 396, 788, 1249
BslI CCNNNNNNNGG 4 cut(s) 811, 1115, 1195, 1217
BsmAI GTCTC 2 cut(s) 702, 1201
BsmFI GGGAC 3 cut(s) 396, 788, 1249
BsmI GAATGC 1 cut(s) 1055
BsnI GGCC 4 cut(s) 250, 330, 437, 1443
Bso31I GGTCTC 2 cut(s) 702, 1201
Bsp1286I GDGCHC 1 cut(s) 860
Bsp143I GATC 3 cut(s) 499, 1009, 1039
Bsp1720I GCTNAGC 1 cut(s) 1353
BspACI CCGC 3 cut(s) 758, 908, 964
BspANI GGCC 4 cut(s) 250, 330, 437, 1443
BspCNI CTCAG 1 cut(s) 1366
BspLI GGNNCC 4 cut(s) 804, 837, 985, 1222
BspMAI CTGCAG 3 cut(s) 898, 1232, 1404
BspPI GGATC 2 cut(s) 1004, 1047
BspT107I GGYRCC 2 cut(s) 983, 1220
BspTNI GGTCTC 2 cut(s) 702, 1201
BsrDI GCAATG 1 cut(s) 1389
BsrI ACTGG 7 cut(s) 91, 100, 166, 296, 629, 738, 1394
BssECI CCNNGG 1 cut(s) 987
BssMI GATC 3 cut(s) 499, 1009, 1039
BssT1I CCWWGG 1 cut(s) 987
Bst2UI CCWGG 2 cut(s) 562, 942
Bst4CI ACNGT 2 cut(s) 832, 1366
Bst6I CTCTTC 3 cut(s) 417, 1311, 1449
BstC8I GCNNGC 2 cut(s) 252, 644
BstDEI CTNAG 2 cut(s) 1155, 1353
BstF5I GGATG 5 cut(s) 7, 91, 570, 1013, 1022
BstH2I RGCGCY 1 cut(s) 168
BstHHI GCGC 2 cut(s) 167, 477
BstKTI GATC 3 cut(s) 502, 1012, 1042
BstMAI GTCTC 2 cut(s) 702, 1201
BstMBI GATC 3 cut(s) 499, 1009, 1039
BstMWI GCNNNNNNNGC 2 cut(s) 547, 1160
BstNI CCWGG 2 cut(s) 562, 942
BstSCI CCNGG 2 cut(s) 560, 940
BstSFI CTRYAG 6 cut(s) 154, 666, 894, 1164, 1228, 1400
BstV1I GCAGC 1 cut(s) 804
BstX2I RGATCY 2 cut(s) 1009, 1039
BstXI CCANNNNNNTGG 1 cut(s) 948
BstYI RGATCY 2 cut(s) 1009, 1039
BsuI GTATCC 1 cut(s) 388
BsuRI GGCC 4 cut(s) 250, 330, 437, 1443
BtsCI GGATG 5 cut(s) 7, 91, 570, 1013, 1022
BtsIMutI CAGTG 2 cut(s) 289, 837
Cac8I GCNNGC 2 cut(s) 252, 644
CaiI CAGNNNCTG 1 cut(s) 215
CfoI GCGC 2 cut(s) 167, 477
Cfr13I GGNCC 6 cut(s) 568, 578, 802, 835, 991, 1441
Csp6I GTAC 5 cut(s) 127, 324, 456, 1034, 1221
CviAII CATG 2 cut(s) 1089, 1445
CviQI GTAC 5 cut(s) 127, 324, 456, 1034, 1221
DdeI CTNAG 2 cut(s) 1155, 1353
DpnI GATC 3 cut(s) 501, 1011, 1041
DpnII GATC 3 cut(s) 499, 1009, 1039
EaeI YGGCCR 2 cut(s) 248, 435
Eam1104I CTCTTC 3 cut(s) 417, 1311, 1449
EarI CTCTTC 3 cut(s) 417, 1311, 1449
Eco130I CCWWGG 1 cut(s) 987
Eco147I AGGCCT 1 cut(s) 330
Eco31I GGTCTC 2 cut(s) 702, 1201
Eco47I GGWCC 5 cut(s) 568, 578, 802, 835, 991
Eco57I CTGAAG 1 cut(s) 993
EcoRII CCWGG 2 cut(s) 560, 940
EcoT14I CCWWGG 1 cut(s) 987
ErhI CCWWGG 1 cut(s) 987
FaeI CATG 2 cut(s) 1092, 1448
FalI AAGNNNNNCTT 2 cut(s) 718, 750
FaqI GGGAC 3 cut(s) 396, 788, 1249
FatI CATG 2 cut(s) 1088, 1444
FblI GTMKAC 1 cut(s) 904
Fnu4HI GCNGC 1 cut(s) 793
FokI GGATG 4 cut(s) 98, 577, 1000, 1009
Fsp4HI GCNGC 1 cut(s) 793
FspBI CTAG 7 cut(s) 648, 717, 789, 998, 1007, 1043, 1263
GlaI GCGC 2 cut(s) 166, 476
GluI GCNGC 1 cut(s) 793
HaeII RGCGCY 1 cut(s) 168
HaeIII GGCC 4 cut(s) 250, 330, 437, 1443
HhaI GCGC 2 cut(s) 167, 477
Hin1II CATG 2 cut(s) 1092, 1448
Hin6I GCGC 2 cut(s) 165, 475
HinP1I GCGC 2 cut(s) 165, 475
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HinfI GANTC 9 cut(s) 35, 140, 343, 403, 677, 685, 691, 1192, 1237
HphI GGTGA 3 cut(s) 65, 287, 550
Hpy166II GTNNAC 6 cut(s) 469, 743, 770, 835, 905, 1397
Hpy188I TCNGA 8 cut(s) 40, 342, 682, 690, 1030, 1147, 1281, 1414
Hpy188III TCNNGA 7 cut(s) 11, 350, 497, 698, 775, 1007, 1263
Hpy8I GTNNAC 6 cut(s) 469, 743, 770, 835, 905, 1397
Hpy99I CGWCG 1 cut(s) 1345
HpyAV CCTTC 6 cut(s) 217, 603, 744, 968, 1420, 1453
HpyCH4III ACNGT 2 cut(s) 832, 1366
HpyCH4IV ACGT 3 cut(s) 465, 1312, 1340
HpyCH4V TGCA 8 cut(s) 7, 264, 487, 896, 1055, 1092, 1230, 1402
HpyF10VI GCNNNNNNNGC 2 cut(s) 547, 1160
HpyF3I CTNAG 2 cut(s) 1155, 1353
HpySE526I ACGT 3 cut(s) 465, 1312, 1340
Hsp92II CATG 2 cut(s) 1092, 1448
HspAI GCGC 2 cut(s) 165, 475
KpnI GGTACC 1 cut(s) 1224
Kzo9I GATC 3 cut(s) 499, 1009, 1039
Lsp1109I GCAGC 1 cut(s) 804
LweI GCATC 3 cut(s) 16, 1141, 1175
MaeI CTAG 7 cut(s) 648, 717, 789, 998, 1007, 1043, 1263
MaeII ACGT 3 cut(s) 465, 1312, 1340
MalI GATC 3 cut(s) 501, 1011, 1041
MboI GATC 3 cut(s) 499, 1009, 1039
MboII GAAGA 6 cut(s) 236, 434, 895, 1328, 1463, 1466
MfeI CAATTG 2 cut(s) 357, 605
MflI RGATCY 2 cut(s) 1009, 1039
MhlI GDGCHC 1 cut(s) 860
MluCI AATT 8 cut(s) 41, 357, 513, 598, 605, 701, 746, 1498
MlyI GAGTC 3 cut(s) 685, 1186, 1231
MmeI TCCRAC 1 cut(s) 343
MslI CAYNNNNRTG 2 cut(s) 563, 758
MspA1I CMGCKG 3 cut(s) 254, 758, 971
MspR9I CCNGG 2 cut(s) 562, 942
MunI CAATTG 2 cut(s) 357, 605
Mva1269I GAATGC 1 cut(s) 1055
MvaI CCWGG 2 cut(s) 562, 942
MwoI GCNNNNNNNGC 2 cut(s) 547, 1160
NdeII GATC 3 cut(s) 499, 1009, 1039
NlaIII CATG 2 cut(s) 1092, 1448
NlaIV GGNNCC 4 cut(s) 804, 837, 985, 1222
OliI CACNNNNGTG 1 cut(s) 758
PacI TTAATTAA 1 cut(s) 1501
PceI AGGCCT 1 cut(s) 330
PctI GAATGC 1 cut(s) 1055
PfeI GAWTC 6 cut(s) 35, 140, 343, 403, 677, 685
PflMI CCANNNNNTGG 1 cut(s) 1115
PkrI GCNGC 1 cut(s) 794
PleI GAGTC 3 cut(s) 685, 1186, 1231
PpsI GAGTC 3 cut(s) 685, 1186, 1231
PsiI TTATAA 1 cut(s) 879
Psp6I CCWGG 2 cut(s) 560, 940
PspGI CCWGG 2 cut(s) 560, 940
PspN4I GGNNCC 4 cut(s) 804, 837, 985, 1222
PspPI GGNCC 6 cut(s) 568, 578, 802, 835, 991, 1441
PstI CTGCAG 3 cut(s) 898, 1232, 1404
PstNI CAGNNNCTG 1 cut(s) 215
PsuI RGATCY 2 cut(s) 1009, 1039
PvuII CAGCTG 2 cut(s) 254, 971
RsaI GTAC 5 cut(s) 128, 325, 457, 1035, 1222
RsaNI GTAC 5 cut(s) 127, 324, 456, 1034, 1221
RseI CAYNNNNRTG 2 cut(s) 563, 758
SatI GCNGC 1 cut(s) 793
Sau3AI GATC 3 cut(s) 499, 1009, 1039
Sau96I GGNCC 6 cut(s) 568, 578, 802, 835, 991, 1441
ScaI AGTACT 1 cut(s) 128
SchI GAGTC 3 cut(s) 685, 1186, 1231
ScrFI CCNGG 2 cut(s) 562, 942
SduI GDGCHC 1 cut(s) 860
SfaNI GCATC 3 cut(s) 16, 1141, 1175
SfcI CTRYAG 6 cut(s) 154, 666, 894, 1164, 1228, 1400
SinI GGWCC 5 cut(s) 568, 578, 802, 835, 991
SmiMI CAYNNNNRTG 2 cut(s) 563, 758
Sse9I AATT 8 cut(s) 41, 357, 513, 598, 605, 701, 746, 1498
SseBI AGGCCT 1 cut(s) 330
SsiI CCGC 3 cut(s) 758, 908, 964
SspI AATATT 2 cut(s) 483, 530
SspMI CTAG 7 cut(s) 648, 717, 789, 998, 1007, 1043, 1263
StuI AGGCCT 1 cut(s) 330
StyD4I CCNGG 2 cut(s) 560, 940
StyI CCWWGG 1 cut(s) 987
TaaI ACNGT 2 cut(s) 832, 1366
TaiI ACGT 3 cut(s) 468, 1315, 1343
TasI AATT 8 cut(s) 41, 357, 513, 598, 605, 701, 746, 1498
TatI WGTACW 2 cut(s) 126, 1033
TfiI GAWTC 6 cut(s) 35, 140, 343, 403, 677, 685
TscAI CASTG 2 cut(s) 296, 837
TseI GCWGC 1 cut(s) 792
TspDTI ATGAA 2 cut(s) 35, 297
TspRI CASTG 2 cut(s) 296, 837
Van91I CCANNNNNTGG 1 cut(s) 1115
VpaK11BI GGWCC 5 cut(s) 568, 578, 802, 835, 991
XapI RAATTY 1 cut(s) 41
XbaI TCTAGA 2 cut(s) 1006, 1262
XcmI CCANNNNNNNNNTGG 1 cut(s) 604
XmiI GTMKAC 1 cut(s) 904
XspI CTAG 7 cut(s) 648, 717, 789, 998, 1007, 1043, 1263
ZrmI AGTACT 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.