Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002843

Physical Location & Seq

Genomic Coordinates Forward (+)

41801219 .. 41805873

Gene Structure 4655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0336100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1965 bp

ATGAGTTGCGTCAATTGCCAAATCTTTTGTTTTTTGGTTCGACACTGGTTTTTACATTATTGGTTTGTTTTCTTCTGCCATTCGAAGTCGTGTAAACACACGTTAGCCACAAAAACCTACTATAAAAACCTGCTTAAACTCCAGCACCTACCCTCTGTTGCTCGCCGCCTCTCACTCTCTCTCTCTCTCCAGCTCACACTAATGTCGGCTGCAACTTCATCCTTCTCTCCAGGCCTCACCGCTGCTCCACCTTCATCCTCCAAAGCCCACGCGGCGGCTCCCTCCACTCTCGCCTTCTCCTCCGCCGTCTCCAAGTCCCTCAACCCTCTCAGGCTCAGAGCCGCCTCTCGCGCTGCTGCTGTTGGCCGCGGATCCGCTCTCGGAGCTCGTATGGTCTCAATGCCGACGATTAAGCCCCCGCTCTCTCTTGATTTCGACACCTCTGTTTTCAACAAGGAGAAGGTCAACCTCGCTGGTCACGATGAGTATATTGTAAAGGGAGGAAGGGACTTGTTCCATCTGCTGCCTGATGCCTTCAAGGGCATCAAGCAGATCGGTGTTATCGGTTGGGGTTCCCAGGGACCTGCTCAAGCTCAGAACTTGAGAGATTCTCTAGCTGAAGCAAAGTCGAATATTGTGGTCAAGATTGGGCTCAGGAAGGGATCCCGTTCATTTAATGAGGCTCGCGCAGCTGGTTTCACTGAGGAGAATGGGACTTTAGGTGATATATGGGAAACAATCTCAGAGAGTGATCTTGTGTTGCTACTAATCTCTGATTCTGCACAGGCAGATAATTATGAGAAAATATTTTCGCACATGAAACCAAATAGCATACTTGGTCTTTCCCACGGTTTCCTTCTAGGGCATTTGCAGTCGGAGGGACTTGACTTTCCCAAGAACATCAGTGTAATTGCTGTATGCCCAAAGGGAATGGGTCCGTCAGTAAGGAGACTTTATGTCCAAGGCAAAGAAATAAATGGTGCGGGAATTAATTCAAGTTTTGCAGTCCACCAGGATGTTGATGGGAGAGCCACAGATGTGGCTCTGGGCTGGTCGGTTGCCCTTGGTTCTCCTTTCACATTTGTCACTACGCTCGAGCAGGAATACAAAAGTGACATCTTTGGCGAGCGAGGCATATTACTTGGTGCTGTTCATGGAATAGTGGAGTCCCTGTTCAGAAGATACACTGACAGCGGAATGAGTGAAGATTCTGCTTATAAAAATACTGTTGAATGTGTTACTGGAATTGTGTCAAGAACCATATCAACTAAGGGCATGCTGGAAATATACCGCTCTTTGTCTGAAGCTGACAAGAAGGAGTTCGAGACTGCATATAGTGCCTCCTATTATCCTTGCATGGACATCCTCTATGAATGCTATGAGGATGTAGCAAGCGGCAGTGAGATCCGCAGCGTTGTTTTGGCTGGGCGGCGATTTTATGAGAAAGAAGGTCTTCCTGCCTTCCCTATGGGGAAGATTGATCAGACGCGCATGTGGAAAGTTGGTGAGCGTGTCCGATCGACACGTCCAGCTGGTGATCTAGGCCCTCTACACCCTTTCACAGCTGGTGTTTTTGTGGCCCTGATGATGGCACAGATTGAAGTGTTAAGGAAGAAAGGGCACTCCTACTCAGAGATAATCAACGAAAGTGTAATCGAGTCGGTGGATTCTTTGAATCCTTTTATGCATGCTAGGGGAGTTTCTTTCATGGTTGATAATTGCTCAACAACAGCGCGGTTGGGATCAAGGAAATGGGCTCCAAGATTTGATTATATTCTAACTCAGCAAGCCTTGGTTGCCGTGGACAACGGTACACCCATCAATCAGGACCTCATTAGCAACTTCATGTCAGATCCAGTGCATGGAGCCATTGAAGTATGTGCTCAACTGAGACCCACAGTTGATATTTCAGTGCCTGCTGATGCAGACTTTGTGCGACCAGAGTTGCGCCAATCTAACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH RRM_1

Protein Analysis

654

Amino Acids

71.57

Weight (kDa)

8.35

Isoelectric Point (pI)

45.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KARI_N	PF07991	183 - 357	2.1e-31	Acetohydroxy acid isomeroreductase, NADPH-binding domain
KARI_C	PF01450	366 - 510	3.4e-34	Ketol-acid reductoisomerase, C-terminal domain
KARI_C	PF01450	522 - 591	5.3e-07	Ketol-acid reductoisomerase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15605 AT3G15605 AT3G15605 AT3G15605
fragaria_vesca	FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540
malus_domestica	MD09G1219000.v1.1
prunus_persica	Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1
pyrus_communis	pycom09g13690
rosa_chinensis	RchiOBHm_Chr2g0136961
rosa_laevigata	RLG00000019591
rosa_multiflora	Rmu_co8420089.1_g000001 Rmu_sc0001374.1_g000069
rosa_roxburghii	Rroxscaffold_2G00107840 Rroxscaffold_2G00107850
rosa_rugosa	Rorug02G0335700 Rorug02G0335800 Rorug02G0335900 Rorug02G0336000 Rorug02G0336100 Rorug02G0336200
rosa_samantha	Rh2AG385600 Rh2BG392600 Rh2CG372800 Rh2DG408700
rosa_wichuraiana	Rw2G031540 Rw2G031550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1218
Acc36I	ACCTGC	2 cut(s)	138, 592
AccB7I	CCANNNNNTGG	1 cut(s)	1862
AccBSI	CCGCTC	3 cut(s)	377, 421, 1293
AccII	CGCG	6 cut(s)	272, 351, 369, 687, 1489, 1735
AclWI	GGATC	7 cut(s)	366, 379, 657, 670, 1399, 1750, 1847
AcoI	YGGCCR	1 cut(s)	364
AcuI	CTGAAG	2 cut(s)	639, 1323
AfaI	GTAC	1 cut(s)	1813
AfiI	CCNNNNNNNGG	3 cut(s)	274, 1588, 1862
AflIII	ACRYGT	2 cut(s)	99, 1523
AgsI	TTSAA	7 cut(s)	451, 538, 996, 1232, 1601, 1675, 1874
AhdI	GACNNNNNGTC	1 cut(s)	956
AjiI	CACGTC	1 cut(s)	1526
AjnI	CCWGG	3 cut(s)	229, 576, 1011
AleI	CACNNNNGTG	1 cut(s)	1037
AloI	GAACNNNNNNTCC	2 cut(s)	1157, 1189
AluBI	AGCT	8 cut(s)	193, 386, 593, 617, 692, 1307, 1532, 1565
AluI	AGCT	8 cut(s)	193, 386, 593, 617, 692, 1307, 1532, 1565
Alw21I	GWGCWC	2 cut(s)	388, 1885
Alw26I	GTCTC	5 cut(s)	313, 400, 943, 1319, 1885
AlwI	GGATC	7 cut(s)	366, 379, 657, 670, 1399, 1750, 1847
AlwNI	CAGNNNCTG	1 cut(s)	1916
Ama87I	CYCGRG	1 cut(s)	1094
AoxI	GGCC	4 cut(s)	232, 364, 1543, 1578
ApeKI	GCWGC	7 cut(s)	209, 242, 353, 356, 523, 689, 1410
AseI	ATTAAT	1 cut(s)	990
Asp700I	GAANNNNTTC	3 cut(s)	991, 1319, 1452
AspLEI	GCGC	5 cut(s)	353, 689, 1491, 1735, 1950
AspS9I	GGNCC	5 cut(s)	581, 935, 1544, 1579, 1828
AsuHPI	GGTGA	4 cut(s)	229, 734, 1517, 1547
AsuII	TTCGAA	1 cut(s)	83
AvaI	CYCGRG	1 cut(s)	1094
AvaII	GGWCC	3 cut(s)	581, 935, 1828
BaeGI	GKGCMC	1 cut(s)	1623
BamHI	GGATCC	2 cut(s)	371, 662
BanII	GRGCYC	3 cut(s)	388, 654, 1759
BbsI	GAAGAC	1 cut(s)	1445
Bbv12I	GWGCWC	2 cut(s)	388, 1885
BbvI	GCAGC	7 cut(s)	196, 229, 340, 343, 510, 701, 1422
BccI	CCATC	4 cut(s)	525, 1016, 1582, 1826
BceAI	ACGGC	2 cut(s)	290, 1784
BciT130I	CCWGG	3 cut(s)	231, 578, 1013
BclI	TGATCA	1 cut(s)	1480
BcoDI	GTCTC	5 cut(s)	313, 400, 943, 1319, 1885
BfaI	CTAG	4 cut(s)	614, 860, 1541, 1692
BfuAI	ACCTGC	2 cut(s)	138, 592
BglI	GCCNNNNNGGC	1 cut(s)	272
Bme1390I	CCNGG	3 cut(s)	231, 578, 1013
Bme18I	GGWCC	3 cut(s)	581, 935, 1828
BmeRI	GACNNNNNGTC	1 cut(s)	956
BmeT110I	CYCGRG	1 cut(s)	1094
BmgBI	CACGTC	1 cut(s)	1526
BmgT120I	GGNCC	5 cut(s)	581, 935, 1544, 1579, 1828
BmiI	GGNNCC	8 cut(s)	279, 373, 574, 582, 664, 936, 1758, 1867
BmrFI	CCNGG	3 cut(s)	231, 578, 1013
BmsI	GCATC	3 cut(s)	520, 552, 1912
BpiI	GAAGAC	1 cut(s)	1445
BplI	GAGNNNNNCTC	2 cut(s)	595, 627
BpmI	CTGGAG	3 cut(s)	125, 173, 213
Bpu10I	CCTNAGC	1 cut(s)	653
Bpu14I	TTCGAA	1 cut(s)	83
BpuEI	CTTGAG	2 cut(s)	573, 622
BsaI	GGTCTC	2 cut(s)	400, 1885
BsaJI	CCNNGG	8 cut(s)	367, 576, 577, 847, 961, 1063, 1791, 1800
BsaXI	ACNNNNNCTCC	4 cut(s)	229, 259, 1157, 1187
Bsc4I	CCNNNNNNNGG	3 cut(s)	274, 1588, 1862
Bse1I	ACTGG	3 cut(s)	50, 1246, 1856
BseBI	CCWGG	3 cut(s)	231, 578, 1013
BseDI	CCNNGG	8 cut(s)	367, 576, 577, 847, 961, 1063, 1791, 1800
BseGI	GGATG	5 cut(s)	218, 254, 1021, 1362, 1390
BseLI	CCNNNNNNNGG	3 cut(s)	274, 1588, 1862
BseMII	CTCAG	9 cut(s)	343, 349, 608, 667, 693, 756, 1644, 1796, 1880
BseNI	ACTGG	3 cut(s)	50, 1246, 1856
BseRI	GAGGAG	2 cut(s)	289, 719
BseSI	GKGCMC	1 cut(s)	1623
BseXI	GCAGC	7 cut(s)	196, 229, 340, 343, 510, 701, 1422
BseYI	CCCAGC	1 cut(s)	1424
BsgI	GTGCAG	1 cut(s)	765
Bsh1236I	CGCG	6 cut(s)	272, 351, 369, 687, 1489, 1735
Bsh1285I	CGRYCG	1 cut(s)	1520
BshFI	GGCC	4 cut(s)	234, 366, 1545, 1580
BsiEI	CGRYCG	1 cut(s)	1520
BsiHKAI	GWGCWC	2 cut(s)	388, 1885
BsiHKCI	CYCGRG	1 cut(s)	1094
BslFI	GGGAC	6 cut(s)	301, 521, 594, 727, 894, 1153
BslI	CCNNNNNNNGG	3 cut(s)	274, 1588, 1862
BsmAI	GTCTC	5 cut(s)	313, 400, 943, 1319, 1885
BsmBI	CGTCTC	1 cut(s)	313
BsmFI	GGGAC	6 cut(s)	301, 521, 594, 727, 894, 1153
BsmI	GAATGC	1 cut(s)	1379
BsnI	GGCC	4 cut(s)	234, 366, 1545, 1580
Bso31I	GGTCTC	2 cut(s)	400, 1885
BsoBI	CYCGRG	1 cut(s)	1094
Bsp119I	TTCGAA	1 cut(s)	83
Bsp1286I	GDGCHC	5 cut(s)	388, 654, 1623, 1759, 1885
BspANI	GGCC	4 cut(s)	234, 366, 1545, 1580
BspCNI	CTCAG	9 cut(s)	342, 348, 607, 666, 694, 755, 1643, 1795, 1881
BspFNI	CGCG	6 cut(s)	272, 351, 369, 687, 1489, 1735
BspLI	GGNNCC	8 cut(s)	279, 373, 574, 582, 664, 936, 1758, 1867
BspMI	ACCTGC	2 cut(s)	138, 592
BspPI	GGATC	7 cut(s)	366, 379, 657, 670, 1399, 1750, 1847
BspT104I	TTCGAA	1 cut(s)	83
BspTNI	GGTCTC	2 cut(s)	400, 1885
BsrBI	CCGCTC	3 cut(s)	377, 421, 1293
BsrI	ACTGG	3 cut(s)	50, 1246, 1856
BssECI	CCNNGG	8 cut(s)	367, 576, 577, 847, 961, 1063, 1791, 1800
BssT1I	CCWWGG	3 cut(s)	961, 1063, 1791
Bst2UI	CCWGG	3 cut(s)	231, 578, 1013
Bst4CI	ACNGT	4 cut(s)	851, 1228, 1811, 1900
BstAPI	GCANNNNNTGC	1 cut(s)	1337
BstBI	TTCGAA	1 cut(s)	83
BstC8I	GCNNGC	8 cut(s)	163, 685, 1127, 1277, 1393, 1689, 1788, 1917
BstDSI	CCRYGG	3 cut(s)	367, 847, 1800
BstF5I	GGATG	5 cut(s)	218, 254, 1021, 1362, 1390
BstFNI	CGCG	6 cut(s)	272, 351, 369, 687, 1489, 1735
BstHHI	GCGC	5 cut(s)	353, 689, 1491, 1735, 1950
BstMAI	GTCTC	5 cut(s)	313, 400, 943, 1319, 1885
BstMCI	CGRYCG	1 cut(s)	1520
BstMWI	GCNNNNNNNGC	8 cut(s)	15, 272, 350, 383, 689, 1131, 1337, 1796
BstNI	CCWGG	3 cut(s)	231, 578, 1013
BstNSI	RCATGY	3 cut(s)	1279, 1495, 1691
BstSCI	CCNGG	3 cut(s)	229, 576, 1011
BstSLI	GKGCMC	1 cut(s)	1623
BstUI	CGCG	6 cut(s)	272, 351, 369, 687, 1489, 1735
BstV1I	GCAGC	7 cut(s)	196, 229, 340, 343, 510, 701, 1422
BstV2I	GAAGAC	1 cut(s)	1445
BstX2I	RGATCY	4 cut(s)	371, 662, 1404, 1852
BstXI	CCANNNNNNTGG	1 cut(s)	1039
BstYI	RGATCY	4 cut(s)	371, 662, 1404, 1852
BsuRI	GGCC	4 cut(s)	234, 366, 1545, 1580
BtgI	CCRYGG	3 cut(s)	367, 847, 1800
BtrI	CACGTC	1 cut(s)	1526
BtsCI	GGATG	5 cut(s)	218, 254, 1021, 1362, 1390
BtsI	GCAGTG	1 cut(s)	1405
BtsIMutI	CAGTG	7 cut(s)	43, 699, 910, 1185, 1405, 1863, 1917
BveI	ACCTGC	2 cut(s)	138, 592
Cac8I	GCNNGC	8 cut(s)	163, 685, 1127, 1277, 1393, 1689, 1788, 1917
CaiI	CAGNNNCTG	1 cut(s)	1916
CfoI	GCGC	5 cut(s)	353, 689, 1491, 1735, 1950
Cfr13I	GGNCC	5 cut(s)	581, 935, 1544, 1579, 1828
Cfr42I	CCGCGG	1 cut(s)	370
CseI	GACGC	1 cut(s)	1495
Csp6I	GTAC	1 cut(s)	1812
CviAII	CATG	9 cut(s)	817, 1154, 1276, 1357, 1492, 1688, 1708, 1846, 1862
CviQI	GTAC	1 cut(s)	1812
DriI	GACNNNNNGTC	1 cut(s)	956
EaeI	YGGCCR	1 cut(s)	364
Eam1105I	GACNNNNNGTC	1 cut(s)	956
EciI	GGCGGA	1 cut(s)	292
Ecl136II	GAGCTC	1 cut(s)	386
Eco130I	CCWWGG	3 cut(s)	961, 1063, 1791
Eco147I	AGGCCT	1 cut(s)	234
Eco24I	GRGCYC	3 cut(s)	388, 654, 1759
Eco31I	GGTCTC	2 cut(s)	400, 1885
Eco47I	GGWCC	3 cut(s)	581, 935, 1828
Eco53kI	GAGCTC	1 cut(s)	386
Eco57I	CTGAAG	2 cut(s)	639, 1323
Eco88I	CYCGRG	1 cut(s)	1094
EcoICRI	GAGCTC	1 cut(s)	386
EcoO109I	RGGNCCY	3 cut(s)	581, 1544, 1828
EcoRII	CCWGG	3 cut(s)	229, 576, 1011
EcoT14I	CCWWGG	3 cut(s)	961, 1063, 1791
EcoT22I	ATGCAT	1 cut(s)	1689
EcoT38I	GRGCYC	3 cut(s)	388, 654, 1759
ErhI	CCWWGG	3 cut(s)	961, 1063, 1791
Esp3I	CGTCTC	1 cut(s)	313
FaeI	CATG	9 cut(s)	820, 1157, 1279, 1360, 1495, 1691, 1711, 1849, 1865
FalI	AAGNNNNNCTT	2 cut(s)	1437, 1469
FaqI	GGGAC	6 cut(s)	301, 521, 594, 727, 894, 1153
FatI	CATG	9 cut(s)	816, 1153, 1275, 1356, 1491, 1687, 1707, 1845, 1861
FauI	CCCGC	2 cut(s)	426, 976
FbaI	TGATCA	1 cut(s)	1480
FokI	GGATG	5 cut(s)	205, 241, 1028, 1349, 1397
FriOI	GRGCYC	3 cut(s)	388, 654, 1759
FspBI	CTAG	4 cut(s)	614, 860, 1541, 1692
GlaI	GCGC	5 cut(s)	352, 688, 1490, 1734, 1949
GsaI	CCCAGC	1 cut(s)	1428
GsuI	CTGGAG	3 cut(s)	125, 173, 213
HaeIII	GGCC	4 cut(s)	234, 366, 1545, 1580
HgaI	GACGC	1 cut(s)	1495
HhaI	GCGC	5 cut(s)	353, 689, 1491, 1735, 1950
Hin1II	CATG	9 cut(s)	820, 1157, 1279, 1360, 1495, 1691, 1711, 1849, 1865
Hin6I	GCGC	5 cut(s)	351, 687, 1489, 1733, 1948
HinP1I	GCGC	5 cut(s)	351, 687, 1489, 1733, 1948
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HinfI	GANTC	7 cut(s)	608, 776, 1166, 1208, 1658, 1667, 1675
HphI	GGTGA	4 cut(s)	229, 734, 1517, 1547
Hpy166II	GTNNAC	5 cut(s)	95, 466, 1009, 1804, 1814
Hpy188III	TCNNGA	7 cut(s)	428, 479, 643, 655, 1254, 1324, 1826
Hpy8I	GTNNAC	5 cut(s)	95, 466, 1009, 1804, 1814
Hpy99I	CGWCG	1 cut(s)	409
HpyCH4III	ACNGT	4 cut(s)	851, 1228, 1811, 1900
HpyCH4IV	ACGT	2 cut(s)	101, 1525
HpyCH4V	TGCA	9 cut(s)	212, 782, 871, 1004, 1331, 1356, 1687, 1861, 1925
HpyF10VI	GCNNNNNNNGC	8 cut(s)	15, 272, 350, 383, 689, 1131, 1337, 1796
HpySE526I	ACGT	2 cut(s)	101, 1525
Hsp92II	CATG	9 cut(s)	820, 1157, 1279, 1360, 1495, 1691, 1711, 1849, 1865
HspAI	GCGC	5 cut(s)	351, 687, 1489, 1733, 1948
Ksp22I	TGATCA	1 cut(s)	1480
KspI	CCGCGG	1 cut(s)	370
LmnI	GCTCC	5 cut(s)	250, 283, 383, 1762, 1865
Lsp1109I	GCAGC	7 cut(s)	196, 229, 340, 343, 510, 701, 1422
LweI	GCATC	3 cut(s)	520, 552, 1912
MaeI	CTAG	4 cut(s)	614, 860, 1541, 1692
MaeII	ACGT	2 cut(s)	101, 1525
MaeIII	GTNAC	4 cut(s)	476, 1084, 1112, 1237
MbiI	CCGCTC	3 cut(s)	377, 421, 1293
MboII	GAAGA	6 cut(s)	64, 1191, 1217, 1445, 1486, 1624
MfeI	CAATTG	1 cut(s)	13
MflI	RGATCY	4 cut(s)	371, 662, 1404, 1852
MhlI	GDGCHC	5 cut(s)	388, 654, 1623, 1759, 1885
MluCI	AATT	8 cut(s)	13, 793, 909, 987, 991, 1245, 1717, 1960
MlyI	GAGTC	2 cut(s)	1175, 1667
MmeI	TCCRAC	1 cut(s)	855
Mph1103I	ATGCAT	1 cut(s)	1689
MroXI	GAANNNNTTC	3 cut(s)	991, 1319, 1452
MseI	TTAA	5 cut(s)	135, 411, 675, 990, 1607
MslI	CAYNNNNRTG	3 cut(s)	200, 1014, 1037
MspA1I	CMGCKG	6 cut(s)	242, 369, 692, 1194, 1532, 1565
MspR9I	CCNGG	3 cut(s)	231, 578, 1013
MunI	CAATTG	1 cut(s)	13
Mva1269I	GAATGC	1 cut(s)	1379
MvaI	CCWGG	3 cut(s)	231, 578, 1013
MvnI	CGCG	6 cut(s)	272, 351, 369, 687, 1489, 1735
MwoI	GCNNNNNNNGC	8 cut(s)	15, 272, 350, 383, 689, 1131, 1337, 1796
NlaIII	CATG	9 cut(s)	820, 1157, 1279, 1360, 1495, 1691, 1711, 1849, 1865
NlaIV	GGNNCC	8 cut(s)	279, 373, 574, 582, 664, 936, 1758, 1867
NmuCI	GTSAC	3 cut(s)	476, 1084, 1112
NsiI	ATGCAT	1 cut(s)	1689
NspI	RCATGY	3 cut(s)	1279, 1495, 1691
NspV	TTCGAA	1 cut(s)	83
OliI	CACNNNNGTG	1 cut(s)	1037
PaeI	GCATGC	2 cut(s)	1279, 1691
PaeR7I	CTCGAG	1 cut(s)	1094
PasI	CCCWGGG	1 cut(s)	577
PceI	AGGCCT	1 cut(s)	234
PcsI	WCGNNNNNNNCGW	1 cut(s)	477
PctI	GAATGC	1 cut(s)	1379
PdmI	GAANNNNTTC	3 cut(s)	991, 1319, 1452
PfeI	GAWTC	5 cut(s)	608, 776, 1208, 1667, 1675
PflMI	CCANNNNNTGG	1 cut(s)	1862
Ple19I	CGATCG	1 cut(s)	1520
PleI	GAGTC	2 cut(s)	1174, 1666
PpsI	GAGTC	2 cut(s)	1174, 1666
PpuMI	RGGWCCY	2 cut(s)	581, 1828
PshBI	ATTAAT	1 cut(s)	990
PsiI	TTATAA	1 cut(s)	1218
Psp124BI	GAGCTC	1 cut(s)	388
Psp5II	RGGWCCY	2 cut(s)	581, 1828
Psp6I	CCWGG	3 cut(s)	229, 576, 1011
PspFI	CCCAGC	1 cut(s)	1424
PspGI	CCWGG	3 cut(s)	229, 576, 1011
PspN4I	GGNNCC	8 cut(s)	279, 373, 574, 582, 664, 936, 1758, 1867
PspPI	GGNCC	5 cut(s)	581, 935, 1544, 1579, 1828
PspPPI	RGGWCCY	2 cut(s)	581, 1828
PspXI	VCTCGAGB	1 cut(s)	1094
PstNI	CAGNNNCTG	1 cut(s)	1916
PsuI	RGATCY	4 cut(s)	371, 662, 1404, 1852
PvuI	CGATCG	1 cut(s)	1520
PvuII	CAGCTG	3 cut(s)	692, 1532, 1565
RsaI	GTAC	1 cut(s)	1813
RsaNI	GTAC	1 cut(s)	1812
RseI	CAYNNNNRTG	3 cut(s)	200, 1014, 1037
SacI	GAGCTC	1 cut(s)	388
SacII	CCGCGG	1 cut(s)	370
SaqAI	TTAA	5 cut(s)	135, 411, 675, 990, 1607
Sau96I	GGNCC	5 cut(s)	581, 935, 1544, 1579, 1828
SchI	GAGTC	2 cut(s)	1175, 1667
ScrFI	CCNGG	3 cut(s)	231, 578, 1013
SduI	GDGCHC	5 cut(s)	388, 654, 1623, 1759, 1885
SfaNI	GCATC	3 cut(s)	520, 552, 1912
Sfr274I	CTCGAG	1 cut(s)	1094
Sfr303I	CCGCGG	1 cut(s)	370
SfuI	TTCGAA	1 cut(s)	83
SgrBI	CCGCGG	1 cut(s)	370
SinI	GGWCC	3 cut(s)	581, 935, 1828
SlaI	CTCGAG	1 cut(s)	1094
SmiMI	CAYNNNNRTG	3 cut(s)	200, 1014, 1037
SmlI	CTYRAG	3 cut(s)	588, 601, 1094
SmoI	CTYRAG	3 cut(s)	588, 601, 1094
SphI	GCATGC	2 cut(s)	1279, 1691
Sse9I	AATT	8 cut(s)	13, 793, 909, 987, 991, 1245, 1717, 1960
SseBI	AGGCCT	1 cut(s)	234
SspI	AATATT	2 cut(s)	634, 807
SspMI	CTAG	4 cut(s)	614, 860, 1541, 1692
SstI	GAGCTC	1 cut(s)	388
StuI	AGGCCT	1 cut(s)	234
StyD4I	CCNGG	3 cut(s)	229, 576, 1011
StyI	CCWWGG	3 cut(s)	961, 1063, 1791
TaaI	ACNGT	4 cut(s)	851, 1228, 1811, 1900
TaiI	ACGT	2 cut(s)	104, 1528
TaqI	TCGA	8 cut(s)	40, 83, 435, 629, 1095, 1323, 1520, 1656
TasI	AATT	8 cut(s)	13, 793, 909, 987, 991, 1245, 1717, 1960
TauI	GCSGC	7 cut(s)	168, 275, 278, 344, 369, 1398, 1432
TfiI	GAWTC	5 cut(s)	608, 776, 1208, 1667, 1675
Tru1I	TTAA	5 cut(s)	135, 411, 675, 990, 1607
Tru9I	TTAA	5 cut(s)	135, 411, 675, 990, 1607
TscAI	CASTG	7 cut(s)	50, 706, 910, 1192, 1405, 1863, 1917
TseFI	GTSAC	3 cut(s)	476, 1084, 1112
TseI	GCWGC	7 cut(s)	209, 242, 353, 356, 523, 689, 1410
Tsp45I	GTSAC	3 cut(s)	476, 1084, 1112
TspDTI	ATGAA	8 cut(s)	207, 243, 660, 833, 1142, 1386, 1696, 1834
TspGWI	ACGGA	1 cut(s)	927
TspRI	CASTG	7 cut(s)	50, 706, 910, 1192, 1405, 1863, 1917
Van91I	CCANNNNNTGG	1 cut(s)	1862
VpaK11BI	GGWCC	3 cut(s)	581, 935, 1828
VspI	ATTAAT	1 cut(s)	990
XceI	RCATGY	3 cut(s)	1279, 1495, 1691
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1019
XhoI	CTCGAG	1 cut(s)	1094
XmnI	GAANNNNTTC	3 cut(s)	991, 1319, 1452
XspI	CTAG	4 cut(s)	614, 860, 1541, 1692
Zsp2I	ATGCAT	1 cut(s)	1689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.