Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002843

Physical Location & Seq

Genomic Coordinates Forward (+)

41778876 .. 41779483

Gene Structure 608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0335900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGACTGTGGAATGGTTCCGCTATCAATGAAACTGTTTGATGATTTTGATAAGGAAGAACAAGATCGGTATGGGGATCAGATTGATGAGATTGTGGAGGATGTAATAAATGCAAACTGGCATGCCTCAAAAGCAGTACTGATGTTGCTTCTGGGAACCATTGTTGCTGCTGTGATTGCTGATCCCCCTGTTGATGCTGTTGACAACTTCCTTTTTTTTGAAAGGGTTAACTTCTTAACAGCTACAGGTATTTGGCCTACATTCTTTGTCTCATTTGTTATTCTGCCTTTTGTTAGCTCCAGTGACATTGTGTCCACTCTAAATTTTGTCAGCCAGAAGAAGCAGAGAACAGCATCATTGGCCTACTCTGAGATATATGGATCAGTAAGAATGAGTAACATCTTTTCCCTGGTAGTGTTCTTGGCTCTTGTGTACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH RRM_1

Protein Analysis

146

Amino Acids

16.38

Weight (kDa)

4.3

Isoelectric Point (pI)

29.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15605 AT3G15605 AT3G15605 AT3G15605
fragaria_vesca	FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540
malus_domestica	MD09G1219000.v1.1
prunus_persica	Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1
pyrus_communis	pycom09g13690
rosa_chinensis	RchiOBHm_Chr2g0136961
rosa_laevigata	RLG00000019591
rosa_multiflora	Rmu_co8420089.1_g000001 Rmu_sc0001374.1_g000069
rosa_roxburghii	Rroxscaffold_2G00107840 Rroxscaffold_2G00107850
rosa_rugosa	Rorug02G0335700 Rorug02G0335800 Rorug02G0335900 Rorug02G0336000 Rorug02G0336100 Rorug02G0336200
rosa_samantha	Rh2AG385600 Rh2BG392600 Rh2CG372800 Rh2DG408700
rosa_wichuraiana	Rw2G031540 Rw2G031550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	20
AclWI	GGATC	3 cut(s)	84, 176, 388
AcsI	RAATTY	1 cut(s)	322
AfaI	GTAC	2 cut(s)	138, 434
AgsI	TTSAA	1 cut(s)	221
AhdI	GACNNNNNGTC	1 cut(s)	310
AjnI	CCWGG	1 cut(s)	408
AluBI	AGCT	2 cut(s)	242, 297
AluI	AGCT	2 cut(s)	242, 297
Alw26I	GTCTC	1 cut(s)	274
AlwI	GGATC	3 cut(s)	84, 176, 388
AoxI	GGCC	2 cut(s)	254, 360
ApeKI	GCWGC	1 cut(s)	167
ApoI	RAATTY	1 cut(s)	322
BbvI	GCAGC	1 cut(s)	154
BciT130I	CCWGG	1 cut(s)	410
BcoDI	GTCTC	1 cut(s)	274
BfmI	CTRYAG	1 cut(s)	243
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
BmcAI	AGTACT	1 cut(s)	138
Bme1390I	CCNGG	1 cut(s)	410
BmeRI	GACNNNNNGTC	1 cut(s)	310
BmiI	GGNNCC	2 cut(s)	18, 157
BmrFI	CCNGG	1 cut(s)	410
BmsI	GCATC	2 cut(s)	184, 362
BpmI	CTGGAG	1 cut(s)	283
BsaJI	CCNNGG	1 cut(s)	408
Bse1I	ACTGG	2 cut(s)	122, 300
BseBI	CCWGG	1 cut(s)	410
BseDI	CCNNGG	1 cut(s)	408
BseGI	GGATG	1 cut(s)	106
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	2 cut(s)	122, 300
BseXI	GCAGC	1 cut(s)	154
BshFI	GGCC	2 cut(s)	256, 362
BsmAI	GTCTC	1 cut(s)	274
BsnI	GGCC	2 cut(s)	256, 362
Bsp1407I	TGTACA	1 cut(s)	432
Bsp143I	GATC	4 cut(s)	64, 76, 181, 380
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	2 cut(s)	256, 362
BspCNI	CTCAG	1 cut(s)	361
BspLI	GGNNCC	2 cut(s)	18, 157
BspPI	GGATC	3 cut(s)	84, 176, 388
BsrGI	TGTACA	1 cut(s)	432
BsrI	ACTGG	2 cut(s)	122, 300
BssECI	CCNNGG	1 cut(s)	408
BssMI	GATC	4 cut(s)	64, 76, 181, 380
Bst2UI	CCWGG	1 cut(s)	410
Bst4CI	ACNGT	2 cut(s)	8, 36
BstAUI	TGTACA	1 cut(s)	432
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	369
BstF5I	GGATG	1 cut(s)	106
BstKTI	GATC	4 cut(s)	67, 79, 184, 383
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	4 cut(s)	64, 76, 181, 380
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 176, 359
BstNI	CCWGG	1 cut(s)	410
BstNSI	RCATGY	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	408
BstSFI	CTRYAG	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	154
BsuRI	GGCC	2 cut(s)	256, 362
BtsCI	GGATG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	307
Cac8I	GCNNGC	1 cut(s)	123
Csp6I	GTAC	2 cut(s)	137, 433
CviAII	CATG	1 cut(s)	122
CviJI	RGCY	6 cut(s)	242, 256, 297, 333, 362, 425
CviKI_1	RGCY	6 cut(s)	242, 256, 297, 333, 362, 425
CviQI	GTAC	2 cut(s)	137, 433
DdeI	CTNAG	1 cut(s)	369
DpnI	GATC	4 cut(s)	66, 78, 183, 382
DpnII	GATC	4 cut(s)	64, 76, 181, 380
DriI	GACNNNNNGTC	1 cut(s)	310
Eam1105I	GACNNNNNGTC	1 cut(s)	310
EcoRII	CCWGG	1 cut(s)	408
FaeI	CATG	1 cut(s)	125
FaiI	YATR	4 cut(s)	72, 123, 376, 378
FatI	CATG	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	168
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	168
GluI	GCNGC	1 cut(s)	168
GsuI	CTGGAG	1 cut(s)	283
HaeIII	GGCC	2 cut(s)	256, 362
Hin1II	CATG	1 cut(s)	125
HincII	GTYRAC	2 cut(s)	202, 229
HindII	GTYRAC	2 cut(s)	202, 229
HpaI	GTTAAC	1 cut(s)	229
Hpy166II	GTNNAC	4 cut(s)	202, 229, 315, 433
Hpy188I	TCNGA	2 cut(s)	81, 370
Hpy8I	GTNNAC	4 cut(s)	202, 229, 315, 433
HpyCH4III	ACNGT	2 cut(s)	8, 36
HpyCH4V	TGCA	1 cut(s)	113
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 176, 359
HpyF3I	CTNAG	1 cut(s)	369
Hsp92II	CATG	1 cut(s)	125
KspAI	GTTAAC	1 cut(s)	229
Kzo9I	GATC	4 cut(s)	64, 76, 181, 380
LmnI	GCTCC	1 cut(s)	302
LpnPI	CCDG	8 cut(s)	103, 137, 201, 231, 313, 347, 395, 422
Lsp1109I	GCAGC	1 cut(s)	154
LweI	GCATC	2 cut(s)	184, 362
MaeIII	GTNAC	2 cut(s)	302, 395
MalI	GATC	4 cut(s)	66, 78, 183, 382
MboI	GATC	4 cut(s)	64, 76, 181, 380
MboII	GAAGA	2 cut(s)	68, 349
MluCI	AATT	1 cut(s)	322
MnlI	CCTC	2 cut(s)	91, 136
MseI	TTAA	2 cut(s)	228, 236
MspR9I	CCNGG	1 cut(s)	410
MvaI	CCWGG	1 cut(s)	410
MwoI	GCNNNNNNNGC	3 cut(s)	131, 176, 359
NdeII	GATC	4 cut(s)	64, 76, 181, 380
NlaIII	CATG	1 cut(s)	125
NlaIV	GGNNCC	2 cut(s)	18, 157
NmuCI	GTSAC	1 cut(s)	302
NspI	RCATGY	1 cut(s)	125
PaeI	GCATGC	1 cut(s)	125
PkrI	GCNGC	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	408
PspGI	CCWGG	1 cut(s)	408
PspN4I	GGNNCC	2 cut(s)	18, 157
RsaI	GTAC	2 cut(s)	138, 434
RsaNI	GTAC	2 cut(s)	137, 433
SaqAI	TTAA	2 cut(s)	228, 236
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	4 cut(s)	64, 76, 181, 380
ScaI	AGTACT	1 cut(s)	138
ScrFI	CCNGG	1 cut(s)	410
SetI	ASST	3 cut(s)	244, 250, 299
SfaNI	GCATC	2 cut(s)	184, 362
SfcI	CTRYAG	1 cut(s)	243
SphI	GCATGC	1 cut(s)	125
Sse9I	AATT	1 cut(s)	322
SsiI	CCGC	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	408
TaaI	ACNGT	2 cut(s)	8, 36
TasI	AATT	1 cut(s)	322
TatI	WGTACW	2 cut(s)	136, 432
Tru1I	TTAA	2 cut(s)	228, 236
Tru9I	TTAA	2 cut(s)	228, 236
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	1 cut(s)	302
TseI	GCWGC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	302
TspDTI	ATGAA	1 cut(s)	44
TspRI	CASTG	1 cut(s)	307
XapI	RAATTY	1 cut(s)	322
XceI	RCATGY	1 cut(s)	125
ZrmI	AGTACT	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.